Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038201584.1 PREDICTED: Patiria miniata DEP domain-containing mTOR-interacting protein-like (LOC119729080), transcript variant X1, mRNA TCGCTACCGCCACTATTTTGTTTGCCCGCACGTTGATGATGACGTTGTTGATGTGTTGATCAGCGTCATT TTTGTTGATTTTACAAGTGATCATGATCATGTGAACACAACATTACTAGCGTAACCGGTTCATCCTTGTG TTGCCGGCTTTTCTGTAGAACTTGCTGTTGAAAATCCGCCGTCGATTCTCACGTCGGACTCTTGATCAAC TTCATTGTGGGCAGTAGGCACCTGCTGAAGCTAAGTCACCTTGATTGGTTGGAGCAGCTGGGAAGTGTAC AGTGCAGCGATACGTGCGTGCAGGAGTATAGTGCGGCTTTGAAAATGTGAAATCCTCCAGCTTGCACACA TACATACTATTACTTACGAGACGCTGTGTGGAGCACTTAGTATCAACAGAAAAATGAGCTGGAATCAAGA TGTGAAGGTACGAGCGGGAGCATCTTGCTCTTGGAACTTCCAGAACTTTTAGGTTTTAGTGAATCTTCGA GCGATATTATCCAATCGTTAAGTTTGTTGAATGATCAAGGAGTTGGAACTGTCAAACTTTAAATTGATCC GCGGTCAGACGAACAAACACAGGAGAGACTGCTTTCCAAAATCTGAAAGGGCGGAAAGATATCAACTGTT TTTGAAAAACGCATGTTTGACCCGATGCCGGTCAGACGAACAAACAAATTTGGAATTTTGGAGTGTCTGC CCAGAAAGATTTCAACGTTGAAATTGCAGCAACTGAATCACTAAAAGTGAACCACCAACCACCTAAACTA CTTAAACATTCTCAGAACCTGAAGACATTAAGCTGTCCACCGCAATGTTTTCGCCAAACAATAACTCGCA GAATGGCGAGCGGAAATCGACCGGCCAGATTGGTTTGACCGTCTCCAAACCTCAGAGGTCATCCTCAACG GCCTCGCTGAGCAACCAAGTGTTTGGCAAGATCCTCATCATCGGTGAAAAGCTGAGATTGAGTTTTCACA ACTGCAGTCCAGCAATGGTTAAGGACAGACGTTACCACCTCCGAATGTACCCAAAATGCTTTGTGGGCAG CGAGGCTGTTGATTGGCTGATCAAACACGGAAGCGTCAAAGACAGACCAGAAGCGGCCGCAATGCTGAGC ATACTGCAACGGCATAACGTTATTCATCACGTGTGTGACGACCATCATTTTAAAGACACCTACCTGTTCT ACCGGTTCAGGGTAGACGACAGTACCCTACCTCTGAGCAGAGAAACAGAGCTGTACATCAAAGGACATCA GCTGTGTCACGAACAAACACGACTTGGCAATGGTTCCATCATGAAGCTACATAATGATTTTGGCGCCATG TATGAGAAGAGTTTTTACGGCACCCAGTTGGTGAACTGGTTGGTGACGAGCGGCAAGTGCTCAACGAGAC AAGAAGCCATCGGCCTGGGCAAGGATCTCCTGGAGCTCGATCTTATCCAACATGTTACAACGGAGCATCA CTTCAAAGACGAAAGACTCCTGTACATCTTCCATCCCGACTTCATCCAGCTGAAGATCATTGACCTCTTG GAGATGCACGATCGACCCAGAAGTCTCTCCCTGGACACCAACATGCCCACCCAGAATCAGAAACTCCTGT CGCCCAGCCAGCCCGTCCGGCCCAAGTCCCCCCAGGTCATGGATGTTCCAGTCATCGCGGAGAATCGGCC CAAGTTCCAGATTGGTTCCCCCGAACGGGAGGACAGCATGAACTTTACGTCAGAATCAGATAATGAGGAC GTGTCCAGTTCGGGGTCGCAGGATGTCCACGGGCCAAGCATGCTGCTGGCAGGGTTTAGCCCAACGGCCG AAGAAATGAAGAACCCGGATGCGACCTGTATCAGACAGACCGTCAAAATTCTGGGTGATTCCGTAGGGTT CGGGTTTGTCGTGCGAGGTGACGGTCCTTCTTATGTACAGACAGTAGATCCTAGTGGTCCCGCCGCCAAG GCAGGCTTAAAGACCGGACAGTTCCTTTACTTTGTCAACGGCGAGTATGTGTTGAACAAAGCCCACGTTG AAGTGGCTCACATCATCCTGAGAAATCCCCACCAACTGACAATGGATGTACTGGTTCCCAGACACCAGGT GATCAAGAACAGGTGAATAAACAGGTGCTGACGAGGTAGTCAACGTACGTAACAAGTGGCAGGTTCTATG GAGCTGCTGAGCCAAAAAATATTGTAAAACTTGAACAAAGAAATTGAATGGAGCAGGGTTTGATCCCGCG ACCTCCGTAATACTGCACTGGTGCTCTACCAACCGAGCTCATCACCAGCCTTAGGTCCCGGGTTCAAAAC CTGTTCAATCATCTCTTTGTTCAAATTTACAGTTATTACAGCTTCCTGTTGTGGTTTATTTGATGCCAAG AAAGTGATTGGCAAAGGCGAGTAATCCACAAAAGTTATGTTAATTTTACCAAAACCCGCCTGTATTTTTG GATTTTTTTTCATAAAATGTCAATTGGTACTGTAGCAAAATATAGTATTTCCTACTTTATCAGTGCTGTG AAAATGAACCTTCCTGTACAGGCTGGGAAAAATATGAGATTCATAGACAGTTTTGATATGCACTCAAGTA CTTTTCGTCTTTTTTTACCATTTTTTTCTTGTCGTTCAATTGCGATTAAGCATGTACATGAAAATGCTGC TGAAAGGAAGGTACATTTTAAAATAACTTGTAAACTCAAGCTCAGGTTTTGCCCTTCAACGACGTATTGT TTATAAATACGGTATACAGGCATGTAAATTTTCCTCGGATCAGCTGATTTCCTCGTTTTTTACTTCCCAT GTGCACCATTGAAAATAGAAAAACACTGCACAAAGTCTGGGAAAATTTTGAATTTCCTCTTTTTTTGTGA TTTCCCAGTTGCACACCTGGGTATAGTATACCAAGTGTTGTCCAGAGTAATTATGAGAAAGAAAAAACTA CTCCGGTGGGACTTGAACCCGCTATCTCCTGCTTACTAGTGCAGATGTCTTACCACTTGCCGGTGTCTGT TGGCTGATATAACAGCGTTAGCCACAACCAAACAACACAGAGTACACAATTTTTATAATAAAAAAATGTC GGTGAAGGGCAAAACCCAATATTGAATTGATATCACCCGACGCAAACAAATTCCATCTTATAAATAACTT GTAAACCAGACCAAGAGTCATCTATCAAATTTCTGTATTTTCTAAAAGATGGGAAATATGTTATGTTTTG GGACAGATGAGATAAAGAATCACCTCTTGACTTTCTATAAAGCTTAGAAACTTTGTTATATATACTGTAA TAAATTGTGTCTTTGCCTTGTAATGGCTTTTGGAGGGTGAAGGGGGGGGGATAGAAGAGATTAAAAATAT TACCGCTACAGGTTCAATTTGAGGGGAGACGTGCATTATACTTCATGTGTGTGAATTTGTACAAACTTTT CTCGACAATTTTGTTTTGTGCCACAAAAATTCAAAATACTCATGCTGCCATATTACCTCAGTATAAAGAA TATTGGCCTTTTACTCTTTTTTTTCCAAAAATGTAAAATCAACTGTGTAATTTGTATTTTAATGTCAGTT TTTATAATTCGTAGCTGACAATCTTAGTTAAAGTATTCTGATGATCAGCTTTTGTTTAATATCTTGTTCT AGAGTCTATATAAAACAACATTGTAAATATGTCTATGATTTCTCCGAATTTTATGAGATTAGTTTCTGTG CCTCCAGAAGTAAGTTTTTCTGACTTTTAAATGAAATACCTCACTACAAAAAAAAGGAACATTTTATTCT TATTTTTTAAGGGCACTGAATATCACAGTTTATTTCTTCTTTTTTAAGGCACTTAAGTTCACATTTTACT GTGAAAAGAGATGTTTTTTTTCCTAAAGCTTGTTCCAAGATATGGTAAATGAACAAGTTTTTTTCCTTTG TTTTTCTTACCACCGTTGGCACCAGCTTTCGCCACACACTCTGCTTTCGATTGCACACTCAAACTCTTAA TAATATTCTGAGTTTAAGATGTACAAGATGTCAAGTTTAATGTAAATTTTATTGCATTTCAAGCTCGTAA TATGATTTTTTTTTTTTTTGCTTCCGCGCTGATTGTTACAGTTGTTTTGAACTAGAACTGCAAGTTAACC TTAATATTTCAGAAGTGCCACTCAGGATTTTTTGGTCTCAGAATTTAAGACGGCAAACTTTCCTTTTTTT ATCTTTTGCTGATCGGAATGAGTAGTCATACATTTTTGTATTTTACAGTCGTTGTTACTTTAACGAGATT CTTTTCAGCCACAAGTCTTATTTGCCAGTATCTCTAAATGGAATGAACTATTTAGAAATAAAAGACAACG AAGGACGTGAATCCACGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds