Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038201113.1 PREDICTED: Patiria miniata serine/threonine-protein kinase Sgk1-like (LOC119728744), transcript variant X3, mRNA TGCGCAGATTGTGTGTCCGCCTTCCAGACTATCTTATCACCTGTTCTTTTTGCCGCGATTGACATGTGTG TGTGAGTCGAGCGATTGAGGAGGGGCGCACAATCATCACGAAGCCACAGTTACAACGCCGGTTTCATCGA TCTTTTGCAGATTTCATCCGCAAGATTTCTTGGGATTGGATACTTGGTCATCATGATCAGCACAATTTGA AGCCAAACACGAGCTGCATTCAAATTCCTTCACGGAAGAGTGGGCCTACATATGCGTACATCCGTGACTT CTGCTAAGTGCCGATAACAGCGAGAGACCTCCACTCCCTCCGTCCAAGGTCTGAAATCTGCCAACGCCAC CGGCCAACAAAAAAAGTGCATTCAATCAAAAGCAAAACGTCAGTCAGCCAGCCCTTCGTGGAACTGAACA CAAAATGGCTGCCAACAGTACTAGCGTCCACGTCTCTGACACACAGACATGGGAGAAGAACAAGAAAACA ACAGTATACAAGGTTGTCGTGGTAACGGGAGGCAAGACATGGTTCATCTTCAGACGATACAATGAATTCC ACAAACTCTATGAGATGCTCAAGAAGAAGTTTCCAGAGGCTGACCTCAAGTTGCCAGGCAAGAAACTCTT TGGCAATAACTTTGACCCGGAGTTTATTCGACAGCGTCGTGAGGGTCTCCATGACTTCATCCAGAAAATT ATCACCAACCCAAAGATTGTGAAACTACCGGACGTTCAAAGTTTCCTGTCCCTAGATGATCCTCGTAACA GCTCTGATAACAATGTCATTGATGAGAACAACACAGAATACTTCAGCGATCCCAAAGATCCAAACACTAT CAACCTTGGGCCCTCTGCAAATCCCTCAGCCCGACCGAGTGACTTTGACTTCCTTAAAGTCATTGGCAAG GGAAGCTTTGGCAAGGTGCTGTTGGCCAAACACAAACACGTGGACAAGGTGTACGCTGTCAAGGTCTTGG AAAAGAAAGCCATTATGCAAAGAAATGAGCAAAAGCACATCATGGCTGAAAGAAATGTCCTTCTGAAGAA CCTCAAGCATCCATTCCTGGTTTCCCTCCACTACTCATTCCAAACGCCCGACAAGCTGTACTTTGTCCTT GACTACATCAACGGTGGTGAGCTGTTCTTCCATCTGCAGAGAGAGAGATGCTTCCCTGAACCCAGGGCTC GATTCTATGCCGCCGAAATTGCCAGCGCCATCGGCTACTTACACTCACTGGATATTATATACAGAGATTT GAAGCCGGAGAACATTTTGATTGACAGTGAGGGGCATGTTGTCTTGACAGACTTTGGTCTGTGCAAGGAA GGTATCGCAGCCAAAGGCACTACCTCAACATTCTGTGGAACACCGGAGTACCTTGCCCCAGAAGTCTTGA AGAAACAGGAGTATGATCGTAGTGTAGACTGGTGGTGCCTAGGTGCAGTGCTGTATGAAATGCTGTCTGG ATTGCCACCATTTTATAGCAGAGACACTGCCGAGATGTACGACAACATTCTCCACAAACCGCTGCGAATG AAGAGCAACTTCTCTGCTCCAGCTAAAGTCATTCTGGAAGGGATGCTCCAGAAAGACCGCAAGAAGAGAC TTGGTGCAGGGGACCAAGATTTCCAAGTCATCAAGACCCATGAGTTCTTTGATCCCATCGACTGGGAGGC ACTGTACGCTAGAGAGATCACACCTCCATTCAATCCTAGTGTTAGCAGCAACATGGATACCAAGAACATT GACCCTGAGTTTGTTCGTGAGCCTGTACCGCAGTCAGTTGGTCGGTCCATTGAGTCCCACATGGTTAGCG CCAGCGTACAGGAAGCAGACTCTGCCTTTACTGGCTTCACATATGTCCCACCAAGCGAGGCATTTGATGA CTAAAAGACCATTCTGCAGTGTTTTCCTTAAACAAAGAAAAAAAGGCAAGTCTTTAAAAATCCAGCTTGA ATGCTGCGCCTAGTGTGCTGAAACATTGGGTGAGTTTTGTTGAGATTGGGTGAGATTTGAAGAAATTGTT TGTTGTATGATGTGTGCTAATCTCTATTCTATTAGATTGTATTTTAACATCGAGGTCATCAATTCATTTG TACAAATTTTTTTCAACGTTTCTGCCAAAAACTTCAACCGCTATAAATGTTTTGTCATTTTCTATGCGAT ACAATGTACAATTTTCGTGCTGATTTTTGAAATGACATGCACATGTCATAAATATGTTCAATATTTTTTT GTTACATGAAAAAGTATTTTGAATATTGACAATATCAGCAAGAGTGAGCTTTTAAAATATTCTCTTTGAT GATGTATGAAGTTTGAAAATGTCTCGGACAAGTTCATGTCCCTATTAACGTGTGTCCCTACATGTGAAGG AATGACTTGTACATGTATTCAAGTTGATTCTAGTTAATTAATGTGTGTTTGTCAATGCTTCTGATTTCGT TGATCAGGATGGAAAGACATTCAACACTTGTTTTCAAAAGCAATTAAAAAATTAAAGAAAATTCCATGTA ATTTTTATGAAAAAGGTATATTCCAATCTAATGGTATTTAATTTATGAAGAATTCTTCAACATGTGCATT CCACCAAAAAAGTTTCAATTTACATTTGCCAAATACATTCAGATAACTTTTGAACTCTTTGCTATTACAG ATTATATCCAAGTTGCTGATAAAATGTACAAAATGTGTGATCGCACATTTTTTTCATATATCTGGAAACT GAACTGAAATTTGTGTGTCATATGTAGATCAATCATAGAATTTAGTCTCATTTCAAGTCATTTTTGTTCC TTTTTTCTTTTGAGATTTCTGATTCTAATACATTGTCAGCCAGTAAGATATTCTGTCTGACAAAAGACGG CTGGTGTCAAGTAAAGTTGTTTGTAAAGTAGTTTAGCACCTTTGTTTTTCTCTATCACTTTGTTCATCTT TTGAAGCATTTTCTTTTCTTAATTTTCAAGAGGTTTGGGTTTTCAGTTCAGCATTTGTGTTACGTTCCCG ATGCCACATTTGAAACTGTATTTCAGATACAAAATTTAATGTGACATCTGAGCATTTACGTTAACATTAT AGTCACTTTTTTCACTTCATTACTTTTGATATTGTGTTGTTTGCTTCAAGTCAAGAAACGTTTTACAATT GACAGATTTATATTCATTCCTGTACGTTTGCTCACTAAGGCAGGTTAAATCTCTGCCAAAGAGATGCGTG CCATTCTGAGTTCACCACAGATCCCGGTTTTCTTTGCTTGTTTGGGGTTTCCCCCTCATCTTTCTAAGTA TTTCAAGGTTTTGTAGTTTTCCCTGAATCAGGCAATGCAGCAGTGTAATGACTTCAGATGTTACATGATC AATCTGTTGATGGCATAATATTCCTATAAAAACTGCCGCAGGTCTAGATGCCAAAGTGTTCAGCCTTCAA GACTTTTAAGAGTACGACCACTCAAACTATTCATCAATTTTTCTTATTTGCACTTTTTTTTAGTCCAACG AGGCAGTCCCTAAAATGACCAGTAGATTTGCCCGTACATATTACACCCTTCTTTTTCAAGTATATGGAGA ACATTGCATTTTGTAAGGTTAGTTTAAAGTATGCCAGTTCTGAAACACAAATATTCATGGACCAAATTAC ACTCAAAGAAGAGATCCCGTAACTTTCAAGATGATAGCATTTAGATGCAGATAAGAATATTCTATGGCTG TAAGAAAAAGATTATTACGCATTTTACTCATGAATGTTTGGTGAAGCAGAAGAGGCTTGTGGATTCTTTT GAGACAAATTTGTTTTCGACCCAAATACTGTCATTAAAAAGGGATACTACACCAGCCAACTCCAACATCT AGGAAAATTAAGTGACTTAAAATAATACCGTTCGAATGTGCCAAATAAATGTATATGTTTCCATTACTGT TTTGCCCCTTTTTTACAGTGAAAGGTGATAGCTGTCAATTGATTTTTCATAAATGACAACTCTAAACAGT CTGAAATTAAGTAATTTGAACCTAGTAAATGCAGGCTTTGTAACTTATATTGCTTTTCATTAATTTCCAA CGGAGTTTTGAATGCAGCAGTTAACGTGCACCAAAGCTTTCTATTATTTTGAAATAATTGCACTGTAAAG AAATGATTGTCTCAATTTGGACAAAAATATACTTGTTATTTTCAGACATGTTGTGCTGTAAGTTCAGTTG TATGTGTATGGACAATAGTTTACTTGTGTACTCTTGCTTATGCACATTTAATTAAGCGAACCAACCAACC AAAGACATTCCCTTATGTTTATTCATATTCCTGTACGTATATTCAGATATGCAGATTGATATTCATTAGC CATATTTAAATCTCTTGATTTTACAGTTATTTGCATTAGTTGGTTTACTACTACATCCTGAATCTGTAAG TCTGAAAGTTGCAACAGTTGCCTTCAAAAGTGGTATTCATAATTCCAAGCAAATTTGAACAACAAGAAAA TACTTTCAAAAAGTGTATTTTGTACGTCCTACAAAAGTTATGATGATTTTGTTACTTTAAATATTTACTT TTGTTGATAATTGTTTCCAAATTATCATTGTCTTTCCATTCCCTGTAGATGTATTGTGTTGTGGTGAAAT CAAGTTAGCCAGAAGAAATTGTGGATGATAGTTAATTTCCCTTCGAAAAGTGTAAACATGCACGCATCGT TTGAGGCTTTTCCTCAGAAAATAACGGCAAATGCACCATGTTAAAAGAAAACTGCATTGGCGTATAATTA TAAAACCATGTGCTGCTGTGCGCACATGCAGGATGTGGCATTGTGCATGATACACGTGTCGTGAACTTGC ATGTTTACACGTGTTCAAAATGAAATTTTAAAACACGTTGTGAATAATGTTCTTGAGACAATCTTTCAGA GAAAATATCTATATAATTATACGTTGTTGCTTTGAATATCAACGATTATGTTTGTGCTGTTAGGCATTTG ATCTTGTTTCATTTGTCTTTTCGTAAGTGAATCAAAAGTTCATTCTAAATGACCATAGTGTGTGAAAATG CTGAAATGAAGAGCAAAGTACGTATACCACTATGAGAAACTAGATATTTTACTGTCAACGCCAAGAGAGA ACAAATCAGGGAATAATATTCCAAAGACGCCCAAGTTTGCTGACATGACAAGCGTTTATTGGGAGTACCA TTCCTAGCCAGCCAGGTATCTTCGTGCGTACCAAATCGTATTGTTGCCCAAAATAAATCAATATGATGTG GACATGTGTTCTAGCTTCCGGGATGTAGAGCGACTCATCTGATTCAGATGTATGTGTTATGTCAGTAAGC AAGTTCTTGTAAAACAATGACGACTTTCATTATTTTTTCTAGATTATTAAAAAAAAATACAAGGATGAAA AAAATAGGATGCGAGAAAAATTGAGCCAGCTTTATTAATAACGTTATATTAACGTGTAAGATACCTTCAA AATAAAGTTAATAGATTTTTTGGTTTGATAAAGTAGTTAACGAAATAATTCTATGAGAGTATATTAATTA TTTAATTGTAATCGAAAGAAGATAGTTATATGGAAATCAACTGTATATAATGTAATATACGTGAAATGAT ACCTCTCAGATATATTGTACGAAGCGTTTGAAAACAAGAGAAAGAAAACTGGAATAAAATGAAGAGATAA AAGACAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds