Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038201108.1 PREDICTED: Patiria miniata intraflagellar transport protein 52 homolog (LOC119728743), transcript variant X6, mRNA TTTCACTGATTGTGGAGTTTAGGACCCCAGCCCGGTAAATGCACTTTTTATAACTTTTTGGACTCACTGC ACCGTACCTAAGTAGATGACGATGACATCATATTGAATATCTGCGGATTCAGCAGGAGATGGGGGAGAAA GGTCAACGTACTACCATTGCCTTTGATGTGTCCAAACGAGAGTTATTCAGTCCTCAGAATGGATTCAAGT CCCTGCACAAAAAGCTGCGCAGTAGCTGGAAAATCACAAGTCAAAAAGATGAAATCACCGAGGATAAGTT GGCAAATGTCAAGGTCTTTGTGTTGGCTGGACCCAGGGAAAAGTTCACAGCACCTGAGTTTGAGGTAATC AAGAGATATCTAGAGAGTGGAGGCAGCGTGCTAGTCATGATGGGGGAGGGAGGCGAGACCAAATTTGACA CCAACATCAACTTCTTACTGGAGGACTATGGTGTCATGGTCAACAATGACAGTGTTGTCAGGACGTCATA CTACAAATACTTCCACCCTAAAGAAGCACTTATAGCAAATGGTGTATTGAACAGAGCAATAAGTGTGGCA GCTGGCAAGGTGGCTCATAGCATCAGTGAAGATGAGGCAGTCAATGATGCAAAATCTGTTGATTCCAATT TGACTGAAAGGAAAGAGGCGTCTCCTCCCACCATTACCACTCCACCTGCTGGGGAGACGGGTGACGATAA ACAGTCCAATTACAGGGAAGCTTTGACATATCTCTTCCCCTTTGGAGCGACGTTGAACGTAGCCAAGCCT GCCACAGCCATTCTGTCCACAGGAACGGTTGCCTTTCCCCTGAACAGACCCATATGTGCTCTGCATTCAT CAAAGTACTCCAAGGGTAAGCTTGCTGTTCTGGGCTCTGTCCACATGTTCAGTGATCAGTACATTGATAA GGAAGAGAACGCCAAGATTATGGACGTCATCTTCCAATGGTTGACTACAGACAGTGTCACACTCAATGCT ATAGATGCGGACGATCCGGAGATTTCTGACTACAACATGCTGCCAGACACAGCCAAACTGGCTGACAATC TGAGATGTTGCCTTCAGGAACACGATGACACACCACGAGATTTCAACTCACTATTCCACAGTTCACTGTA CACTCTGGACACTACCACTGTACCCAAAGTAATCAGGTCGTTTGAGTTATTAGGAGTGAAACATGACCAG CTGTCACTGATCCAACCTCAGTTTGAGACTCCGCTGCCTTCACTTCAACCTGCTGTATTTCCCCCGGCCT TCAGGGAGTTACCAGCACCAGCCTTGGATCTGTTTGACCTTGATGAATCCTTCTCATCAGAGAAAGTCCG ACTGGCTCAGATCACAAATAAATGTACTGATGATGATCTTGAGTACTATGTGCGTGAGTGTGGAGAGATC CTAGGAGTGAGCAACAAACTACCTGCTGATAGCCGAGATGCTAAGCATATACTGGAGCATATCTTTGCAC AGGTCGTAGAATTCAAGAAACTCAACCAGGAGGATGACGGAATTGAGGATGAAGGCATCTACTGAGAGAT AACTGCTCAATCAAGCTCATGAAACAGCAGTTGGGTATCCCACACAGAGATATATCAAGAAGTGTCTGGG TCTGTTCAGCCTTGGTTTAAACTGTTTTCCCTGTTATGTTAAGCTGCAAATAAGTGTTCCATGGTTTATA TATAAAATCTACTCTTTGTCACAATGCACTCGTGCATGGAGAGTAGATGGAGCTTCATGACTACCTACAT GTACAAGAGCACTTTGTACAGAACACTTGCGCCCACTTGTTTACCCTGCATGTATGATTGAGGTACCATT AGCAGGTGTTTGTGCTCCGTACATTGTGAAGCCTTTTTTGGTAAGAACTTGGCATTCTCTTATAGACATA AACTTGTCAGATCTGATTCTATTTGTTTTTTGTGGTAAAAGTGACATTAGGATGCGCTAATGATCAGAAC CGTAATCAAGTCAGCATCATAGTCAGGTTAGTCAGGTCACGAAGGAATACCTCAGTCACAGCTCGTTTAA AGTTTCGCTTGACGTGACACTAGACTTGCAATTATTTACTTGGAACGCGACTTGTGTTTGACTTGTAATG ATTTGAGAACTAGGATTTAATTTGTTGACAAGAAATGCCCCGACACTGTGGAGAGATTCCCATAGTTGAA TTCAAAACAAATCAAGCAATTGTGTAAGCCTTGTCATTTGAGTGTAAATATTGTATTTATCTCATTTATA ATTGGGAAAACGTCATGTACATACACTTTAGATTTGTGTGAATAGTTTTTGTGTTCCAACCAAATCAACA TGTAAATGTCATTGAATGTAAATTTCATTTAATCCATCATCAAACTGTAAGGATGTGCCAGCCAGTGCTG AAGTTGAGTCCATGACGAGTCCATCACAGGTCCTTCAGTCTCAAGTCAAGTCACTAGCTATTCAAATGAA CTCACAAAAGCATTCATTGTCATTGTTCATCCCCTGTGACTTGTTACTAGACTTGTGATGCACCTGTGAT GGTCTGGACAACACTGGCTGCAGCTTCCATGGACCATGGCAGACAGTGCTGTACATCTGTGTCGGGGAGT GGGGGGATGGGGAATATTAACCAAAATCCAATAATTGGGGGGGGGGGGGGGGTGGGGGCTTACTTACTGG GCACTATATTACACAAGGGGGCGCTGTTCAGGATACAGATGTACTTTTTATGTACACTAACCCGCCTTAA CCTTGCATCCAAATGGCATATATTAAAGCTTTTGTACCTTTAGTCTCTGTTCCTCAGCGCTATTGAATAC ACTTTGGTTTTTTTGAAGTTCGCAAAATACATTAAAATCCGCCTGTTTTGTTTCTCACCACGAAAAAGGT CAGAAGGTGTGGGATATCTATCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGATTTACTCCCCT GATGTCGGACTTGTTTGTAGTATTGCATGGTGCAAGGTCATGTGATTTTCACCAGGAAAAGCAAATGACT CTTTTCTCAGCGTATACAACTGTTTACATTAACCTGCATGGGCTCCGTGCGCCAACAAAAGTTTTTACCG CTTTTGAGAGCTCCGTGGACGGGACACACAGCATGCGTGTATTGTATTGATTCGCGCGCGAAGTACGCAC GACCTCCAGAATGTGCAAAAGCTTAGCCACCGCATCTTCGCGTGAGCGTCGGGCGTCGTCGGCGCGCGAA TACGTTCAAATTCAACTTGCGGTGGTCTCCGAGACTAATCCCCGCCTCCACTAATTCTGGATACATTCGA AATACACAGTGGATGGATCGGGAACCAGTCTAGGTCACCCCCAACTCTCCTTTTCTGGTCGTTGATGGGG TGCTTGTGCACGGAGCCCATACTGTGTGGAAGTCAAAAGAGACTTAGATGGTAGTTTTGCCTGCCAGTAG TTGGTAGGCATGTAATCACCGGTACCATGGTCTGTAGTTTGATGTCTCTGCTCAAAGCAGCCCAAGACTT TAAATTCTTTCCAATCTTGTTATGAATCATCAAATTTACCAAAGGAAATGTGGTTTTCCCCAGAAAGAAT GACCATAAAACCTAAGCACCTTGCATTGTTTTCAATTTGGTTTGAAAAGCTTTGAAGTCTCTGGAAACAA TCAAACATTGAATATCAGAAACATTTGCAACTTTGTCTCAGAGAAATTTGTTTGTACATGTATTAAAGGC AAGCCCTTAAAACTTGACTATTTTTATTAAAATAGTTTTTTTCTTTTTAAGTTAGTCCATACAAGTTTGA AGTTTGAAAAAAAAATTTTTCCCTATTTTCCTACAAGTTGACCCCTTTCTTTGTTTTGGAGAAAATCCAA TCTTTGCAAAATTTTAATAAAATGTTAGCCTAACCCAATTTTTCTCTTTTTTTTTTATCAAAATGTATGG CTATTCTCTTATCCTTATATTTTTAAGAAAAACAAGCAAACATTTTGACCAGTTTTGATTGAAATGTCAG GTTCACCGTTAACAATTCAAATTTTTTTGTAAGAATAGAAATTTTGCTCTATTATTAATAAAAAGAAATG TAAGGATTTTTTTGATTTTTTGGTGGTCCCAGAGGGCCAGCCTAGGGCAAGATGAAAGAACAATTGTTGA CCATTGGTTGACCATAGTTCAACTAAAGTTAGCCTGAACTCTGTCTAGTTGATGATGGTTCACTCCCCAG TCGACTATTTGGAACCAGCCTACCGCGGCTGGTCACACAACGATTTATAGCTGGTTATCAATAGCAATTT CAAAAACCCAGTGCAAAGCGGACCAAGTATCAACAAAAATGGCGGGGAAAAAAAACTGTGAGCGCTAAAT TTCATTTTCATTGCACAGTTTTTCCATGTTAGTTCATGATTATGTCCCTTTTATCACCATTGTATAATAA TATTGAAGATTATGTAAGATGTCCTAAACTATACACAATCACTATTATTTGTGTAAATAAAGAGAAACAA CAAGTGTTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds