Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038199551.1 PREDICTED: Patiria miniata putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 (LOC119727601), transcript variant X1, mRNA CCGCGCATGCAACGCGCACGCACGTACACAAAGTAGAAATGGCGACAGTTTGAGGGAAGTCGGCTGCCAT TCTTTAAGTTCATTTTTCTCCCTTTTTGTTGCTAAATATTCATTGTTTCCCGTGAATTTTCATTCATGGG AAAGGCAGTGTTGGACAGTCGCATGAGGTCCTTTGTTTAGTGATATTTAGCTGTCACAATGCGTCGGTTC CAGAGAATTATTGAGCCGATAGACGACTATTTGTCTTCAATTGGTTTGTACAGGAAAATCACTGCGAAGG ATGGCTCGTGCCTTTTCCGCGCGGTTGCAGAACAGGTGTTTCACACCCAAGCCCACCATCTCAAAGTGCG AGATGCATGTGTCAAGTATATGGAAAATAACAGAGACCGCTTTGCTCCGTTCGTTGAGGGCCCCTTTGAC CAACATCTTGTGAAGCTAAAGGACCCAAAGGAATGGGCTGGCCAAGTGGAGATTAGTGCATTGTCTCTTA TGTACAAGCGAGACTTCTTTGTCTATCAAGAGCCTGGGATTGGTGCATTCAACGTCACTCAGAATGGATT CACAGATAAGATTGTGCTGTGCTTCTCCCATGGCAGTCACTACGACAGTGTCTTCTCCAAGAAGTTTCAA GAGAATGCTGCCATCTGCCAGTCAATTATCTATGAGATTCTGTACAAAGATGTCTTCAAGCTCTCCAAGC AAGTTGACGAGGCAGTGGATATTCTACGCAGCTCTAACAAGAAACCCATGAGGCGAGATGGCCACTATGG CCCTGATGGAATGAGAGATGGACGAGGCATGGATGGAGATCACATGGGAATGGACAGGGATGGGAGAGAT CGATTTGGTCGATACCATGAAGAGAAGAAGAGACCGCCACTTCCGTACCGTGTCGCTAAAGCTCTGGATC CTGAGATCTATCGTAATGTGGAGTTTGACGCTTGGAATGAAGCAAGAAAAGAACAACAGCACCAGGATTA TCTGGTAGCTTCTGTCCTGCAATATGCACCAGGTGACAAGTGTCAGGTATTCTTGGATGACCCTAAGAAG CTGTACAATGCTCACATTCAGGATGTTCAACCTAACAACGGTCCTGTCACTGTCTTCATTGAAGATCTGG GGGAAAAGCATACCGTTCCAATGAAGAATCTGAAACCAGTGGAGTCACTGAGTCCTCGTCGACCCTGGAG CCCTCTGGGAGTCCGAAGCTACAAAAATCTAAATGGGTACTTCCAGAAATATGCCAATGGAGTGAACAAC GAATCAGGTTACAATCAGCCGTGTCACCAGCAGCAGCAGCTACAGCAGCATCCATCCTTCGTGCATCCAT TGATGCAACAAGACAGGCAGCACCCAAGATCAACTTCTCCTTACCAAAGAGGAAGAGGGGGTGGTCGTTG TAATCACACCATGCACAATGCCATGTCTCAGGAGGAGTATGATGAGAAACGAGCATTGGAGGAATCCTTG GCACTCTTTGAACTTCAAGAACGAGACCCTGCATCCTTCCCTTCTCTGCCGGGGCACTCAACTGGTCGCA TCAACTCGGCAAGTCCAGTCAATCTATGGGATAAATTCAGGAAGGAGGGCAGGAAGAGTGCCTCTCCCAT CCAGAGAATCAATACACCATCTCCCGTGGCTATGTTTGAAGGTAGAGGACCTGTTCATGGTGACGGCATG CAGGGACAATTTCAAGACATGTCTCTTCATGACAATGACAGAGCTGACGGACATGGGATGCCTAATTCGG GAAAGATGCAACTCAACAAGGAGGTTTACCAACCACCCCACCAGCCATCCAGAGAGAATGCTGGTACCCC GCACACCAACCAATCCCCAGGCACACCTAAATGGCATTCTTCTAACTCTACCCTGAGCACCAGTGGAAGC AACGCCTGTCCATCGGCTGGTAACACGCCATCTCCACCTGCTGTACCCATGATACCTAGCTATAATGCAC CAATGCCTACTCTGCCTGGATGGATACCACTCTATCCGCTGGTCATTCCAATTACTGAGAATTTGACAGG ACCGGTCAACGCTAGTGCTACAGCATCCAGAGACCCAAACGGCTACGATCTACCTTTGTCAGATGTGTCT ACTTTGCGCTATTACTACAACTTGGGAGTAGAGTACCACCATCGTCTCTGCCTTCTTCAAATGCACCAGT GGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGTCATTCCATCCACCTCAAGACCCGTCGTCTTG TCCCATAGTGTCACAGGCTCAACAACAGCAGCAACCTGCAATGCAGACATCGTCAGCTAGCAATCACTTC TCTCCAGAGGGCGCTATGTCTGCTAATAACAACGCTCTGGATGATGACACAGAAGAAGGCATGCGTCAGA GATCCTGCACTCCCAATGGACTCCAAGGTATGACTGTCAATACCATTCAGCAGCCAACATTAAGTCCGTC TGGTGTGAAGCAAAATGGTACGCTTTGCCCAAATGTTATTCGACAACCAGTGTTACATCAACAACAGCAG CAACAGCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGCGACAGCAGCAGAGACAACCATTCCTTC CACTGCCAGTGAATGCTGTGTACTTTACTTTCCCACCGCGGGATGTGGGTTTCTCTCTTGGCAGTACACA ACCCTCTAATTCTCTCCCAGGTCACGAACAACGAGAGCAGAATGGCAGACAGAGCCCCAGAAATGTCCCC CTGAGGTGTATGAATGGCCAGCCAATGCAACAGCAACAACAGAATACAGACAACCACGTGGTGTCAGAGT TTAAACCTGATACTGAAGCCAACGCTAGAAGCAAACCAGCATCGTTTGTGACCCCAATGAGACCCAGCAT GCCTCTTAGAATCCCTACTCCAAGATCAGAAGATCGAAGTGTCAATAATATTCCTTCTCACATTCCGGGG TCTCAATCACCTTCATCCTGTCTTCCTGCTTGTCCTTTAGAGATCCAGGCCTCGTCAGGGCCAGCACCTA GGAATCTTGTTACTCCAACCCGACGCAAATCACCCTTTGATATTGTTAGTCCAGGTGTCTTTCCCATGTC ACCTTTTCCTGTTCTTAACAATACTAATATCACTATTCAACCCCCTGTGTTGTCTCAAACAGGACCAACG CAGCCGTATTACATTGATTCGCAAGCCAATCAGCACATTCCGCAGCAGCAACAGCAGCAATTGCAAGCAC CAGCACCTGTCAGCACTTTCTTCAGTCCTCACGCTAATCCACCGGCCATCCAATCTGAGCCCTACCCACA TATGAATTACCACCCAGCACCTCCACCTCCACCCCCACCACCCGGGAACCTAGGCACCTATCAGTACCCA GTACAAGGTCAGTGGCAACCTGCATTTCCCTATGGCAGCCCAGTTAAGGTACCCACTGTAGCCTATGGCC AAAGCCCTCCAGTCACCTTTATGACAAGCAATGCACCTTCTTCAGCACCAGCATTGTATATGCCCACTTC TCACTGAAACCAAATGACCAAAAAGAACATTCATGAGGATTTCTTGTTTGTTTTCAATTCTTGTCAGTTA TATTAGTGTTAATTCATGCATCTAATGGTGAAATAAACATTAATTTATTTCTGACATTTTTGGTGCAACG TATGGAAATATGCAACAATTCTTACTTCTGTTTTGTAATCATAACAAATTGTAAACAGGGTAATCTACCA GTGTCTTTTTTTAAGGTCAACGTTTTTTTGAGGAAGCACTCCCTTGTCATGATTCAGTTATAACAACATT TATCCTTTAGATATTTTTTTGGGCTGATGGAAAAGTGGTTCGTGGCATTGCAAATCTACTGTGCTCTCAT AAAATGAAGTAATGCCATTTAAAATTTGTAACACAAATGTTACTCAGCTTTTTGATAATATAGCAGGCAT ACCCTTGAATACCAGTCAAAATGTTATAGGACAATAACTGGACAGTTAATCACAACCACTGTTGTACTGA CAACAGTAATGTGAGTTCTGTTATAACTAATAGCAATCCAGCACATCAAACAGTTCAAAGTTAGAAGATC TGACAACTTTCCGTTTAGTGCTTACTGTGTGAGTCATTTTTAACTGCAAACAAGTGAGTACACCTGTATT CAAGTCCATGTAAATTGAAATACATTATTACTGTTACTTCAGTTAAAAAAAAGTGTAATTTTATAAGTGA CAGTGCCTTTTCTCGTAGAGGATACAAATTTCTAATTTTTTTTTTTTTTTTTAACGAGTGGTGTAGATGA ACGGTTACCACAGACATGTTATTTTTTGTTCAGTATCAAAACTAAGAAAGTATTTTTGACTCATTTTTTT GAGATGCTGTAGAGATTGATGGAAAGAGAAATGAAAAACGTTCCCGAACAGGGTAAACAGGTTTTATTAA ATAATTTACAAAAGAGATTTTCAAAAGAAAATTATTTTTAATAAGATTTCAAAGATTAAAGACAGTAAAT GCAATATGCAATTGTTACGAAAAGAAGAACACTATTTTTAATTGATTACGTCAGGAAGTCGTTATCAAAA AGAACAGATTATATTTGGGGTTTAGAAGAAGTTTCTTTACTTTGATTGTTGTGGTTAAACTGTGACTAAA AATAAATCCAGAAAATATATGCTTTCTATTTTTATAATAAAATGTTTTGGCTGAGAAAGTTCAAATGCAG CTAAGTTTACTCTTCGAGATTAGTCCCATTGTTTTGAAATTGTTTCTAAACTTTGTTTTTGATGAATTAC AAACATATCTGCAACTTCTAAATCAAAAAGAAAGAGAGCAATTTAAAATACATCATTAATATGCATTCAA TCTTATCATTTTTACTACTGAAATTTACAAAAGAATATTTTATGAATTGAAGCTCTCCAAGAAATACATT GTAAGGAGGTGAAATTTAAGTTAGAAAAATGACTCAGCTGAAATGCTACTCAAGTTCAGAAATATTCTTT ATGACATTAATTGTCGATGGCAGTGTACGATGCAGCAACCATGACAAGTTGTATATTCCGAAAAATGAAA ACAGACATTAAGGTAGCAGTATAACATCATTTTGAAATCTACACTTTTCTTTTGAATAATAGTACCCATC TGGGGATTGAAAATCACAGCAAGTTTATTAACAAGTATTTAACAAAATATTTTGTGAGGCATTTGAATAA ATTTTGAAAGGTGCAGTTCTGTTGTGGTTTAGGGGCAGTGAACCAAAGACAGAAATGTTTGTTTAAATTG AAGCATACATGTACTTCTCATATTAAACATTTGTTTCCTTCAAAAAATTCTCTTTTATCTGTGTGATGTA AATTGCCCATGATTTTTCATATTGGCTACATGTTCCTAGAAGAATTGTTTAAAAAGTTTAAATTTGTTAA TGAGCTGTGTTTTCGAAACCAAACTTATTGTTAAAAGATAAAGGAATATATATCTAAACTCAAATTATTT TGTGATATGTATGTTGAAATATGAACAGCTCTGTCAATGTTAGTAGGGATGCAGTCATTAGATTTATAAG CAGCAATTTTCAAATTATTTGTAAAATGAACAACTAAATTTGGTTGTTAATTACTATTTCTATACGTTTG AGCCTGTTAAATTAATGTAAGATATTATACCTGGGAGATTCTTTTTAAGCTGTTTGAATTGTGTTGTAAA GTTGCTGTTGCAAAATTTACCAAACTTTCATGAGTTTGTGATTAAAAAAAATGTTTTTATTAATCTGCAG ACATATCTATATCAGAATTTTGTTGTTTTAAAAGCAGATCCACAGTTGTAACTTAAAACTCTTTGGAGCG TTGTTTATTAAAAATGTCCTGCTTAATATTACTGCGTTTTTGTGTTGCTTACTTGCAGTATATTGCCAAA TCGTTTCAATTATATTTGAAATTTCTAATTCTTTATGTTGATACATGTATGTAACTTGTTGATCTTGTTC TGATATTGATATTGGGTTTTTTTTTTCAAAATCAAAGTTGTATGCAACTAAAGTTAAACAAAAAATGTTG TCTTTCTTCACTAAGGAAAAGTATATAAAACTATACATGTGTATTATTTTTGAAAAAGTGAAAAGTGGTT TTCTAATTATATTTTGATATTCCCATGATTTTTCATAAATTATATTTAAAAAAAAAATCATACAAATCAG TGAGATTACAAAGTGAAATGAAAAGCGATTTTTGTGAGATAATTTATAATGGTTGACAACTGATTTCATT TGTACAAAGGAAGTTATTGTTTGATAACCTAACGATTTACACATATTTGATACTCTTATTTAAAACTAAA TTAAGTGTTACTGTTTATTTGAACAATGTTTAAACCATTGGAAAACAAAAAGTGCCTTACTCATGACATC TATTTATTACACAACCAAAAGAAAGCTACTACTTTTGAGTTCTTTGTCTTGAAATAATACTGCATAACTG TGCTATAGGTTTGTATTTCTTTCACAGTTATAGGTTGAAGTAACCATTATTTTATTGACTGATTTTGTGC TCACAGGAAACACATTGAGCAGAAAAGATTACATGTGCAACAGTATTATTCGCCAAGTAAAATTTAACCT TGTGCAACTGTTCCTGTGTAATTCAGTTTGTGTGCTTTACATCTTTGAATGTGGTCATTGAATGCAAGCC GAAGTTATGGCTGAGCTTATGTGATAAAAATTAATCTCGCAGGTAGCATTATATTATGTAAATAACTTAC TACATTGCATTTTATTAAAATCTGTCTTTGTTTTCATGTTGGTTCCAGAAGTTAACATTTCCAAGAAAGA TGTGTTCGGTTTTTATAATTTGTTTTCCAAAAACTAAGCCGTCCCTGGCAAGAAGCCTATTGTAACCTGA CACTATTTGCTCGTTTATGGGTTCCGATTCCGAATTGTGCTTGTAAAAGGTGATAGGTTTTAAGATGACT GTTTGTACGATATTTTATCGGATATTGTTCGAAGCAAAATCTTAAAATCTTACAAGTCTTAAATTCGGTG TAAATTTCGTGCAAGTTTTAAAGTGCCTTTGCATTTGTGAAGCATCTTATCGTTTAAGTTTTACAAAGAA GACCCACAAGTAATATCATTACGCACTTAGGTTTTACATCCTGTATTTTACTGATATGTAATGATGTGGT TCACACGTGTTGATTTATATGAGGAAAAGGCAAACAGCTATTTATTAATATTCATCTTTTTTCTTAGAAA TCAAATGAATGTTTTGTTTCTCTTTCCCTATTTCTTTGACTATTTCGTATTTCTGTTGTCATTTGTCTTT GTATTTACTTGTATAAGCTTATTTCTCTTATACTAATTCTGTAATGTGACATTGTTCCCGCACTACTCCG TATACGGTATTGTAAACGTGTATTCCACTTAGCACTTAATAAATTATACTTGTTCCCACCTAACCTTTAA CTGCACAGCATTTTCAAACTTGCTGAATAGGAGTTGAAATAAAACTTGGCACTGCTTAAGCAAAAATTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds