Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038199474.1 PREDICTED: Patiria miniata oral-facial-digital syndrome 1 protein-like (LOC119727552), transcript variant X3, mRNA TTTCGCATTTACACAGCTTCCTGGATTCCTCTTGGTTGAAATCACAAGGATTGTGTTTGATTTTGAATGT GACCCCATGTTGGAGCATCGTCCTGGTGACTTTTTGTATTATGGCTGAACTACAAACAGATTCCAACTGT ATGACTGCTGAGGAACTCAAAACCAAACTTTATCATTCCTTCCGACAAAAAGGTCTCGTAGACTCACTCA AGTCTCAGCTCAGAACAAAGCTTGTGAATGAACTACGCGTCTCTTACAACAGTCAACCAACACCATCCTC GCCGGAGACAGTCCAAGATGATGAGTGTGGTACTTTGATGCATCGAGCTGCTAATAGTCTAGTAGCTGAC CATCTAAGAAGATGCCAATATGAATATACTCTGGCTGTATTTCTACCAGAAAGTGAAACTGGAAAAGATA AGATGTTTACCATTAGGGAGTTATTAGGAATGCTGTTCATTCATCCAGATTCACAGCTATTTAGACGAGT GACAGAAAATGTACGTGGATATCATCCTAAAGGTCTCCTTTGGCAGCTACTGTGTGAACTGACATCTCAT CGTGGTAAATCATTTGACAAAGCTGTTCAAGTAGACAACTTGCCTGCACAATCAAATTCAATTGAGAAGA AACTGACTGCTGTGGATGTATTATTTGACCAAGAAGTGGATGGATATCATGAAAGCAGTCAGGGAATGCA GGCAAAGCTCTTATCTCTTCAACGAAAAATGGAACTCCGAACTAAGGAAGAAATTACAAGGGAGATCGGT CGGTTTAAGGAAAGTGAGGGCAAGAGAATTGAGCTGGAAGAACGTGAGAAGTGTAGACAAGAAATTTACA AGGCCCGAAGAGAGATGGAGAGTACATACCAAGCCAAGTTAAAAGCTCTGCAGGAAAGAGAACGAAGCAC TATAGAGAGAATTCAATGTCATCAAGAGATGGTAGAACGGGAAACTTACTCACAGAGGCAGAGTTTGCTG GATGAGTTGCAGACGTTGAAGCAGAAAGAAGTGGAATTGAAAAGAGAAGATGAGCTGCATAAAAGAGCTA TGTGCTTAGAAGAGAGCAGATGGAAAACTACCGAAGAAAACCTGAAGATTAGAGAAGCGTCTATAGCAAC AATTGAGGAGACTTATGAGAAAAGATTCAAAGAACAGATCCGACAGCATGATGCAGAGCAGCAAGTTAAA CTGGCTGAGAGGATACAAGATATTGAGAAGAGAGAAACTAGAATCAGAGAGGATCAGAATCATCTAGTGC AAGAGAAGGAATTGCAAAGCAACCTGAAAGAAGAACTTAAAGAAAGGAAAAGCAGGATTGCTGAGTTAGA GGTTCTGTATCAGCAGTCTAAATTCGAAGGTGTAGCTGTGGGAAAACGGAATGAATTATTTGCAGAAAAA TTAAAGGATATGATGGATTATCACTCGGTCAAGGAAGACAATGCTGTTCTGAGACGAGAACTGCAGAATG AAAAACGGAGATTGGCAGAAGTTATCAATGAACAGAAGATGGAGCGTACACGTCATGAGGAAGCGCTAGC AGTCATTACTGAAAAGATGTCTCAACCATCTCCACAAATCCTTACATTACAAGCCGAGCTTCAAAGAGCA AAAAGTCAGTTAGATCAAGAAAGAAACTTACTGCAGCACAAAGAGGCACAGTATCGCGCCACTCTACAAG AAGAGCATGAGCGTAATAATGAGCTGAGGAGACAGTTGGAAGAACAAGGCAATCAGATGAGAGAAATGAA CAACCAGATAGCAGATTTGAGACAGACACTAAGACAGACGCAGATGGCATTGAGTAATGAGGTGTATCGC AAGGGAACTACTGGAGTAGCAGCCGGTTCTATTAGGTCTCCTGCCTCCATCGTTGAACATCCTGTGCATG ACCATATAGAACCAGATAATCATTACATTGATACAACACTCCACCAAACACATATAGAACAACAGCTCCT ATTGGCCGACCAGGGAGGTTTTGGACCAATCACAGGTCTTGATAGTGACAACAGTGACCTTTCACCTAAT GCATCCTTGGCCTTTCTAGAAGATACCAAGGCAAGATTTAAACAACTGGAAATAGAAGCTGAGAGTCTTG AGCAGAACTATCAGAATTTCCAGCACCGTGTCACCAATATCAATGCATTGCCAATCAGTCCACCGCTTCA TACTCATCAGTTGAGGCACATAACACCGGCTGTCAATAACACTCATGATGTATCCTCTTGGAGTAAGCAA GTTTGCACCGATAAAGGGCCAGTACAGAATCAAGCCATGAAGCCACCCCCATTAGTGGATGGAACAACCA GTCAGATACATAGTCAGTCTGAAGTACAGAGGACAGAACCACTATCACCAAGGGGTGTGCAGGATTCTCC TAGCAGTAAGGGATCTTCGACACCATCCGATAAACTTGTTTGTGTTGAAGACCTTCATGAGCAAAACAAC CTGTCAAAAAAATCTGTGTCTTCAGTTGGTTCATTCAAAGGTTCTTCACAGTTATCACCCCATGCATCAC CCAAGTCACTGAAGCCTACCCAACCATCTGCCACCGTGTATGATGATGTACTAGCATCTTTACTTCCTCC TCCATCAAGTCCAGTGTTTACTTCTCCGTTAGCGAGCATCTCAGATGGTGAATCATTGGCAGAGTTACTA TCAAAGGATGCGGATGGTGAGAATGGGCCAGATGTCAAGGTGATAAAATCTCAGGGAGTTACAGATGAAG AGTTAAGACTCGGGAAGGAAGATGATGAAGAAAGGGAGGAACATGAGTGGGAAGAGAAACGCAAGAAACG AGACGAAGAGAGACAGTTACGAGAACAGGAAGCAAGAGAGAGGGAGCAAGCCATGTTATTGGAACTACAG AGACAGGAACAAGGTGCAGATCCAACCACACAGCAGAAGGCGGTAGAGAAGGATGACGGAAAGGCTGACT CTGATCAGAAAGAAAGAGTAGGGCCTCCTGGAGAATCTGGTCAAGAGCAGAAGACAGAAGATGAAGGCTT GAAGATTGATCCTGTCATGCAGAGATACATGCAGATGTTACAAGAGAAGAAACAACAAGATCCTCAGGAT AGAAAGGCATCTGTAGTCAGTACTTACTCTGATGCAGCATTTAACGTGGAACATGAAATGGAGGCTGCCG AAGAACCAAACAGCACGAGCCATGTGTCAAATGATTCGGAGGATCCATTTGATGACTGGTAGTATGTGCT TCAATGAATCATCACAGGTGTGTTGGAACTGTAATTGTCATTCTGTCAAAACTAATGTAACATAGCTCCC ATTAAATGTTAGGTCCTTGTTAATGAGTAGAAAACTACTTCTATTATTCATAATTTTAATTAATCTCAAT TGTAATTGTTACATCAGATATGTGTTGGTGATTGTTTTTGTGAGTTGAATTTGAAGCTGTTATGAAAATC CAACTGTTTGTCATAAATGGCATGTCATTACTGAAGGATATCAAAAAAAATGTTAGTTGTGAATACTTAA TTTTTGTCTTCTCCACAAACATATGTCCGATTTCTCTGGTAATTTAAAATCACCCAAGGCCTTCATTTTG GTTAAATACGACCTACCGGCATGCAAAGTTCCTTGTATCAACTGATTTCCTTTTTTTTCCTTTTTGTTTT TACTTCTCTTGTATGCGACTAAAACTGACAAAAACCCAGAGTGTCTTGTAAAGCTTGGGATTTTCTCTCA GTTTATGTGACTTCTCAGTTGTATGCCTGTATCTATGAGATGAATAGTCATCATGAGCATATATGTCAAA GTACTCATCTTCCTAGTGACTTGTCTCAGACAGCATGTCAGTGACTACGAGTTACTTGTTGGTTTTGCCA TCAGTCAGCTATAAACATCTGTCATAAAGATTCAATTGTTGGTCCCTTTTTTTCTACGCTGCATTGACGT TGATGACAGGACTCCCATCATACAGGAAGTTGGCTGTTTGTTGATGTGTTCTGGGCAATTTTTCGAGACA ACAGGAAATCATTTGTGCTCTTTCAAGGTTGCATGATTATTGAGTATGTATAAATGCATTCCAGTGATAC TTGGCAGTGGCAGTTCTATCAGGCTGTAAGGATTATGCAGAGAAAGCTGAATAATGGCTTGACATTTTTC ATTTTGTTTTCGTACAATTGCATGATTTTATTTCTACTTCTGTTGCTTTTAAAATTACTTTATTTTGTTG TGTCTTACATGTCTGTTTCTGTCATTGTATTGTTAATAATAAGTGGAAGTTTTGTAGTGATACCGTGGAC AAATTATCACTTTTGAGGGGTATAGAGGTAATTTTGAGAACTCGAGAAAAAGTAACACGCTTTCTCACCA CTGAAACCGCTGAAAACCTACCACAGTACTGCAAGCTTGAACTCTTACCTTGAAGCTACAATTCTTTATC AGATTATTAATATTTATCGTTTTCTGTTTCTTGTGCTTTTTAAGTACTTTTACATTTTCAATTGTATCTG TTTCTTTTTATTGGTGCATGTTTTATGCTGTTCAGATTTATTTGTATCAGTTGATTTCTCTATTGATGTT TATTGCTATGCATTTTATTAATTATTGCTTGAATACATTATTTGTTTTCATTTGGATATATGTTTGCTGT GTTTTGATTTAAAGTACCACTCAAGATGCGAACTTTTAATTCTATGAACACTTTTTGTCTTTGATAATCC ACTGAAAAGGTTGTATAAGACTAGTCAATTGAAGGTGTTGCTTGGTATTCCTCCTGGATGTACATTTGTA TGCTGTGTAATCTCAGAAAGATGAAGAATCGTCTCGACTTTGGGCTGTATTTCTGGATAATTGACCCACG TGAATTACTAAAGTTAAAGTGCGTCATCATGTCATAGGTTACGGGAGACATTGTTGTTTTCCACTCAGGA TCACCTTGTGGAATTTGTTGTCTGAAGAACCATTCATGCAGTTTTGCCTGTGTGAGGTTGAGGTCCAGCA AATCTTTGAAATGTCCCGTTATAATTACATGTACTAAGCTTTCTTCGTCGATTTCCTGGAAAAAAAGAAT TACCGATCAATTGTAATGTAATAAAGTCTGAATAATTATGATTTGTGAACACCCAACACAAAAAGTTTAA GGTTTTACAGACATTTATTCATAAACAGCATAAGAATAAATGCAAACTTATTTGTACAGTAGAAATTCAA CTGAAAACACTGCATGTTTAGATTTTAAATAAAACATTATGCTGTATGTTCTGTACAGTCTAAGAAAGAA AAATATAAAAATTAACGACATTTTATTCAGAAATGAACTTGTTTGTGGGTGACACATTGCTCTAAAATAA AATGTTTTACAAAACAAAATAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds