Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038198892.1 PREDICTED: Patiria miniata T-box transcription factor TBX2-like (LOC119727010), transcript variant X3, mRNA TGCTTAAGAAAAACAAAATTGAACGTGTGGTTTGGGAAATAGTCAAGCGAAACACGAGCATGAAAAGGAT GGGCATGGGATTTTGACACCTTCTGCCGTCAGTCTCCAAGTGAGGGGCGTGCCAAACGAACACCATACAT CGCCGTCCGTGATGACACTGTGTGTGACGGTAAACCAGCCAGTCACAAGCCAGCCTAACCTAACCATCCA TCCAGAGATCGCGTAAAGCCGGTCTTACACCACGTTCCACGGTCTACGGAATAAATTGACTTTGAACAAC CAGCTAGCAGGACACAGGCAATCTTGACCGTGGACTCCTATTGGACAGTGCGTGCCAAATAACCAATCAA GCTGCGTGCCTCATTACTCCAGCCGTGTTCTCGTCTGGGCTTAGTCGGAGTTGGAGTCGAGAGAGTTACT GGTTTCTCAGCAGGAAGTACGGGAGACTGGTTATATCCAGACCTGACGCAGTTGTGAGCTAGTCAGCAGC GGCAGCAGCCACTGATAACACCGACCGTAATCGGCCGTACTTGTACGGTAGCTGGCTGGCACTCACCACA CGCTAGCAACCTCCTTCGTCATCGGGACTCTGCCCGGACTTTCTTCTCGCATGAAGCAAGCAGAGCTACC CTCAACCTTCCCAGCCATGGCTTACGCACCGATATTACCCCCACGGCTCAGTGACTTCTCGGTCAACTCT TTGCTAACGCAGCCGCACTTTTTTCCGGGCGTATTCCGGGGCCACAGCTTAGCGGGTGCACCGGGGGCCA GCGCCGGCAGCATGCCGGCCGGGTTCCCGGTGCCTAAACTCAGCGACTTGCACAACCCGTACACGGCGCT GCAAGCCGATCTGCTGGCGGCGCACAACCACAGGCAGACCATGCAACAAATCCATGGCATCGAGCCCCAA GAAAGTGACACAGATGACCCTCAAGTGACTCTGGAATCCAAGGAGCTTTGGGATCAATTTCACAAAAGGG GGACAGAGATGGTCATCACTAAATCTGGCCGACGAATGTTCCCCTCCTTCAAAGTCCGAGTCTCGGGCCT AGACAAGAAGGCCAAGTACATCCTTCTCATGGACATCGTAGCTGCCGATGACTGCCGTTACAAGTTCCAC AATTCTCGCTGGATGGTGGCAGGCAAGGCCGACCCCGAGATGCCCAAGCGTATGTATATCCACCCGGACT CACCCAGCACGGGCGAGCAGTGGATGCAGAAGACGGTGTCCTTCCACAAGCTCAAACTCACCAACAACAT CTCCGACAAGCACGGTTTCCAGACGATTTTAAACTCGATGCACAAATACCAGCCTCGATTCCACATTGTC AAGGCCAACGACATTTTGAAGTTGCCATGGAGTCACTTCCGGACTTTCGTCTTCCGTGAAACCGACTTCA TTGCCGTCACAGCCTACCAGAACGAAAAGGTGACACAGCTCAAAATCGACAACAACCCATTCGCGAAGGG GTTCCGGGATCAAGGGACGGGCAAACGAGAGAAGAGGAAATATCCGTCAGCAAGTTACGACCTGGACCAC AGGGACCCGGATGACGGTGCTAGCGATCAGGAACCAGAAGCAGGTGAAGTCAGCACGACCAACTCGGAAA AGCACGAAGACAAAGTTCTTTCACATCACGAGAGAGACATAGCCGCTAGACTGGCTGCAGACCATGACGA GGTCACGGAGCTGCTTCGCCGGAGAGCCGAAAATGAGAGACGGTGCCACGAGAGTAAGCTAGAAGACGTG GAGATGAGAGACGTCAGCCGAGAGAAGGTCCCCACCCTGGGGGACAGACACCCTCACGAAGACACAGCGG GACATGGAGGCAAATCAGACACTGAAGATCGCATCACGGGTAGCCGCAAACCAGAGACCGGTCGGGAATC GGATAAGAGTGACTTGTCATCCTCATCAGGTCCGAAGAGCGGTGGATCGCCTGGGTCTTTGCTCAACCCA TTCCATGCAGCAGCTACAGGCCATGGCCCTCATCCACCTGTGGTCACACCGGTCTATCCGACCCCACATC CGTTTTTCCTGCATCCTCAGATGGCTCTACCCGGTAGCGTTGCCAACCTTGGAGCCATGTCTCACATGAT TCCCTTCGTCTCACAATCGTCTGGTTCCTACTCACCATCCTCACATCATTGTCTGGACGTTCATTCTGCA TTTGCCCTGAGCGCCCATCAGAGCCTTCTGGCTTCGCAGTCTAGTCTTGCCGCGTCTGGTTTTGGACTCT ACTCAGACCCTTCAGCGTTAAGCCAGGCCTACGCGAGCAATGCCTGCACTGGTGCAATATTCAGCGGTCA CCCGCGATTCAGGTTTTCGCCCTATGCCTTGCCGGCTACAAGTACGACAATGGTGACCACGGCCAGTCCA TTGGCCAGCACGCTCCCCTATGATAACTCTCTTCACTCCTCTAGTTTGTTAGGACATTCGGCCACTTCAC CTACAATCAGCACCTCAAAGAGCTCGAGCAGCCCCGGCGCTTCAGTAGTAAGCTCGGCAGCTAGCGAGTT GCAGAGTATACAGAGGATGGTCAGTGGGCTCGAAAAGGAACCTAAGTGACGCTTGCAAGACAAGTCATGA CGTCAACTGCAGATATAGATAATTATAACTACTTTGATAACTAGAGACAAATTATAATTGCACAAAGAAA TTTAACAAGGTATATTGAAGTCAAATGATAAATTATCCTGGTAGACTACAAGAAACCAAGTGTAAGATTC TTATTGAATATCACTCTGGATTCATGGAAATCCTCTGAAATACCCAGTTATATTGATCTCTTTTTCAAAC TTTGATATCATAATAATTATTGATGTGGGCCAACAGTGATCAATTTGTTTCATATTTTTGTCGTAGGCCT AGTGGTGCTTTGTCTCAGTATTAAACAAATCAGAACAAGAAGAACTCAAATGCAGACTTACGAAATGGCT TTCAGTGATTGAAGCCGACCTGTAGCACAAACGCTTAATGTTGAAGGTTTCGTGCGCTGTGGTGTTCCGT TTAACAGCAAACCTCACAGCGCGAGCTATTCCACGTAGTTGTTTGTAGCAAAAAGCCCTGCGTAGACACA GAATAACAAATTGATTTTCTCCATTCGAATTGACATTTTCTTGAAGTTCCTAGTCCATTTTTGAAGTAGC CCTGCTCTGGGTGCATGGTTTTTCTTTTGTTTTTTTTCTTCTGAGAGCGACATCAGATCCAGATGAGGAG GTGATTGTTATTCAGTCCTAGAGATCATGTGAAATCGATGGCCGTAGCGTCATTAGACCCCGGGATAGAT CTCCAGTGACTCCCGTGTCTGAATGGAAGGAGTCCTGGGATGAATTCCCGTCAGTCGCCGACTTATTGAC AGGGTGTTACACGATCAGTTTGGCGTCGTACAGGCCACAGTCTTGACCCGAGGTTTTTTCTAATTGTCGG ATTCTCGATTCTGAAATTTGGGTCAGAAACATAACTTTTAGGGTGTTCAAAAACCATGGGGTTTCGGAAG GGGAATGAAGCGATTCCTGCTGGCTGGGGAGAGTTTACGACGCATTCAACTTGTTGCCATAAGCTTGGTT TAATTCAAAAGTAAATGTTTTCAGTATCCCATCCACAAGGATGTGTTTTGCTGTAGGAATCAATTTGGTT AGCGGATGCATGGCAACTGTGTTGGTTTTACTTTTGATGTATGTGTAGATTGTTGCATTTGTGCAAATTG TTTTCGATGGAAATTGTTCTCAGACCGATATAAGTTATGTAATCCTTCCAAAAAGGGATTCATCCTCGGC GTTATGTTCACAATACCAAGGATATACTAAATTAAAGTGGAATTTCGAAGTAACTGTCAGTTCTTTAGCC TGTAGAAACCGCGCAAGAATCGATTGAAAATACCACAGGTGTTGTCTTATTCGATTATCAACGAAACTGA ACGTTTTCCTGATATGCGATATGCGTCTCATTTTTATTAGTGAAATGAATCGGGTATTAATAAATTAAGA TCAAATTGTTTTGCATAATGCTGCCTTGGGTGCGCCGCCTTTTAATATAAGGTACGAACGGTAATAGTTT TTAATTTAAGTAAAAATATGAATAAAAAAGACTCAAGAAAACCATTGTACATAAACTTTAAATGGTGTTG GATATATTTATGTTTTGTAAGATAGATACAAAATTACTGGCAATTTCTGCAAGTAAACAGAGTTGTTGTA CATTCAGGTTATTTATGAGATAGTTCGTTAATATATTAAAATGCAGTAAATGTTATAGTAATGTCGTCCG CCAAGAACAAAGAATATTAAATTCAAACTAATGCATAATTAGTGATCCCTGTGCAGAGTTCTCGTTGACC TCAAGTCAGACAACGTGTCATGTGCCAAAGGTCAACCGGTCAACCTTTAGTTTCCGGGGTTAAATGAGCT GACATTTGACCTGGATTGGTTCGATTCACTTAAAACTGCTTTCATAATAAAAAAAAACCCAATTTTTTTT ATTAGTCGACACATTTAGGCTAATCCTGAAGTCATTTAAAACTGACCCATTAAAATTTAAGTGACTTTCA TTGTCTATTTCCAAATGAGAATCAAATTTGCTTTCAGAACAAACAAGGCAATATTATTATTCATGTATAG ATTCACAGTCTGCTTTTTCTCTTGTCAGTATTCTTGCTATTCTTTTTTTTTTTTTGGTTCTTTTTTATTA TCTTCGTGTGGTGTTTATTAACAAGCCGCAGAATCATTATTCTTATGTGACTGTCATAGAAATCTTGTCC TCTTAGTGTACATTTTGTACTGTATATTGAAATCCAACTCTAGAAATTGGAGGGGAATTATCAGACAAAA CGGAGTATACCTCTGGTGGCGATTTACCATTAAAAGCCCTCCAGCGGGCAGTGCCAAATGATTGAAAAAG TGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
