Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038198860.1 PREDICTED: Patiria miniata nucleoporin GLE1-like (LOC119726998), transcript variant X1, mRNA TACCGCGCGCCGCGCGCGCGCCGGGGTACGGGTGGGTACGGTACAGTCGACGACTACTCGGGCTAGTCAA GGATTGTGAGCTTCGTGGTGAACAAAATTCTGGTACCGGTACTGGGATTCAGATGTTTACATGGACCAAC AGTAAAAATGAGCACATCAAAAGCATTACAGCTATCAAAAAAAGGTGGTCTTGTGTATGACAGTGGCTGG TACAGAGATGGGCTAGTGCATGAAACCATTGTGAATTGTACCTCTCCACCAAAGATTCCAGCTACACTTA GTCTTTCAGTGCTTCACAAACTCAGTCACACCTCCGATACAAATGATACATGGAGTCCAGCTGGCATTTC TAGCTTTGTATCAGAGGAAGGCAACTTACCAAGTGATGCATCAACTTCATCTTTACCAAGAGAAGAAGTT ATTTTGAGTGAAATTAAATTAGATGATATCCAAGCAACGTTAGCCTCTGTTCAGACTGGCAAGTCCGAGG TATCAATTCAAGAATGTAAACAACAGTGGGATAAACTATCCAAGGAAAGAACAGATAAGCATCGACATGA GATAAAAGAGCACTCTGACCATCTTCAAGTTCAAGCAGTCAGAAGCTCTTGTCTGCTTACTGAGCAACAA GATGAGAAGACGCGCTTATTGTTGCAGAATATGCAGCATGTTCGACATGAGAATGACCAAATGAGAAAAC AACGCCTGCAACACCAGCGAGATCGCTACAATTTGCATGTCAAGAGAATGGAGATGAAGCTAAAGAATGC GTATCAGAAAGAAGCTGAGGCTGAAATCGAGGCTGAGCATAACAGAAGAGTGGCTGAAAGACAAACCTAC CTGGATAGCATGATGAATGTCCATAAACAAATTGATGAATCTTCCAAGAAAATTTGTCTTCAGTTGAACA AGTTCAAACACAAAGAATTTCTCCATCCTGATGCAGAGCAGATCAAGAAAAGTGTTGAGCAATTGGCACA GAAAGCTGAGCACCTTTTGGCTGATGCAAAGCAGAAAGGGGCATCAATGGATCTAGTGGAAAGCATGCAT AAAATTATTGAGTCCCTTATGATTCGGCAAGAACATGCCTCCAATATGGTTGCCGAAGCTGAACGATTGG CTCAAGATGATATGGCAAGGAAAGTACGGGAGGCTCAACATCAAGCAGCAGCAGCTGCAGCAGCAGCTGC AGCAGCAACACAGACGACAACAAAGCCAAGAGCAGCCCAATTACCTCTTGCGTCACTCCAGAACAATGAC AATTCAGTTCTGCATAAAGCAATCTCGGCTGATACATTGAAAGAATACGAGGCACTTCAAAATAAACACA ATGCAGTGATGGACTGCTGTCAAAAACTTGCTACAACAACTGACACTCAGTTGAAGAAGTATCGGTTCGA CCTGCAAAAAGCTGTCAATATTCCAGTCAATGCGATCTCCAATCAGTCTGGTACACATCTAATGGACAAG TTGCAACGACTGAAATCACTACTTCTAGGAGAAATGGTCAACATTTCTGGAAGAAGGGTGTCTGTTACTC GGGATGAAGCAAGCAAGGCCTTTGTTAAAAATCTCTTGGCCAAGAAAATAGTGAAACAAAGTGATGAACA GGTGTCGTCTAACTATGAGTCAGCTTTTCCATTTGCAGCTATTGCTGTTACACTGTGGTGTGATTTTCCT GATTTAGGAGATCTTATGTTGGCACATTTCTACCTCAAGTGTCCGTTCCTAGTACCCTACCATATCACCA AGAGCCAAGAGCAGTCTAACCAGGACTATTACAAGTCACTAGGTTATAATTATGAAAGTGACGGGACTAT TGAGAAGCAAGACAAATATTTGAGGAGGATGTCTGGCTTCATGCGTCTGTATGCAGCAATTATGATCACA CAGCCAATGCCAAATGCAAGAAAGGTCCATCCCTATGGAATAGATCATGCATGGAAATGGCTAGCCAGAT TACTCAATGTTGAACCACAACCAGATATCACTGCAACAATGCTCTTTGACTTCTTAGAGGTGTGTGGTCA TGATTTAGCTGCATCATATCACAGACAGTTCTTCAAGCTCCTACAAGTACTTTACAGGAACTACTTCCCA AAAATCGAGAGTGTGACACCAAAAGGATCTGGGGGACCTGTCATGAGACTCAAGACATTCCTTGAGATGG TCACCAAGACGCAGAGGATAGCACCTCCTAAGGGAACACTGCAAGCTGATTTCTGGAGGACATGACAGTT ATCTGGCAATTTTCACCAAGTTACTCCCGTTATATTTTGAATTAAGTTAGCAATACGTGTTTTTTATGGG CTGTTATGCGAGTTTTTAAGTGAACTGGATCTAGATACTGACTACTCCGGTGACCATCACCATACAGGCA AATGTCCCATTTGTCTTTGATGTATTATTTATAAACTTTATAAAGGGCTCGGTTGGGATTGGAATCATTT GCCTGGCTATCAAGTCATCATGGCAAAGGCAAATGATTCCAATCCCATACCACATCAGCCTATTTTTTTC AATATGCAAGATTTTAAACAACTAATACATTTAACACAGCTTTGAAATAGGTAAAGGCAAGGAACTTGGT CACACAGTGTCTAAATATGTTGTTGTGATCAGTTGACCATTGTGCAGTGAGGCGTGATGGAAATCAAATG CAACTCATAGGGGTTTAGGCCATTATCTGCCAATCAAACATGTTGAAAATTGACTTCATGGTTTTGTAGA ACATAATCGGGAGACATACTTTTTTGGGGACATACTGTATTTTGCTTAGTGTTGATGCCAACGTCAAAAA AGATTTCTGGATATACACACTTACAGAATGAAAAACTGCAGTTTGAAACCAAGCATGTGGAAATGCGTTT AAAGTCTGTATAAGTAGTTTGTGCACTACATTATCAAGTGAGGTCAATGATGCAGCAAAGTACGAGTGCA AACATTAATAACTCTGTACCCTAAGTCAGTGCAATTATATTTTTGTGCAATTTTCGGACGAATCGAGTCA AGTCAAGTCTTCTTCTGATGAGTTATGAGTTATGTGCTCACAGTGACTCGAGTTGATTTGAGTCAGTTAC CCGTTAGCTCTCAAGTCAAGTCACCAAAAATTGTGACTTGAGTCAAGCCATTGACATCCCCTCCCCCCTT TTTAAAGTAGGGTGATACATGTCAGTGATGTACAATGTAGGTCTCGAGGCAGGTCTCGGTATCGAGACCA GTCTCGAGACCTACGAAAATAGGTCTCGACAATTTCAAGGTCTCGACTCAAAGAACTCGGTCTTTGCCTC GATCTCGGAGCAAAGTCTCAAGATCTTGTGGGGTCTCGAGTATACGAGACCTTATTGTTCAGTTGGGGGA AAACCACCACACACACAAAAAAGAAATTTATGTGATCTGACATATCCAACTTACTTTCAAAAGTTTTGAT AGACAGTGGTATCGATTTCGAGGAATAAAATCAAATAGTCTGGTACCCACATGTTACTGCATTTCTAGTA ATGCAAACTCCCTTGCATTACTTCGGTACACTGCTCTGTACCGCATGCGCTAGATGCGTGCGTACGTACT ACTGCATCGAGTTGATCAAGAGCGGTGCAACCATGTCGGCACACTCTGCAGTGACACTTTGGTTTCAAAG ACCACACTGAATTTCCCAACTGGAAGGCAAACAATATGAAGCACTCTGCGATCTGCAGATATTGCAAGAT TAAGCTCACACAGGCTGGCACAAGTTCGGCTTTTAACGTAATTTACGAGGCACCTCAGCCGACTTCATTA GTAAAATCTAAGTCGCTTCGGCTAGGCCAATGACATGTCGCGTTGACATGTCGCATCCTGCTGCACGAAT GTGGACACGACGGAGTAGGACTAGGGACTAGGAGGCCAACATTCTTTTGTTTTGATAATGGATACCAACT TTACCAAAGTATGAAAATGCCAAGCATGAATTGTTCAGATAATCATTGTTCAGATAATGTTTATTTTCAT GGCTATTTAATTTTCAATTTGTAATGCCTGTGGAAACAGCCTAACTTTAATAGGCCTAAAATAAAAATAC AAAATAAATTTTGAGAAATGTAAATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds