Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038198328.1 PREDICTED: Patiria miniata ADP-sugar pyrophosphatase-like (LOC119726592), transcript variant X2, mRNA AGCCAGGTGTGTTGCACGAATTGCACGTACGGCCACACGCGCTTTCTCTATACGGGGGTACGGGTGTACA TGTACGTAATATAATTATACGAAGGAACAGCTTCGGTCACTCCTTCTGCTCTGGAAAGTGAAGTTCAATC TGGCTGGAAGGGTTTCAAGATTGTTGGGCCAGTTGTCGCCACTGTCTTCCCAACAGTTTAAGGGTGTTGC TCGTCTAGTGTCCTGTTCATCTGCACACTGTGAAGCTTCATTAGAGATGTCAAGTGAAGGCACCAGTTCC TCACCGACCAATAACGCCCACAAACCGAAATCAGAGTTTATCAAACAAGAGACTATTCATCGAGAGAAGT GGCTGTCTCTGGAGAAGATAACCTACAAGGACCCCAGGGGGAAGATACGGACATGGGAGACGGTGGAGAG AACCACCAAGCCCCAGAGGCCAGGGGTAGCTGACGCGGTTGGAATGGTCACAATTCTCAAACGGTTACTG CACTACGACTGTTTGGTTCTGGTCCGACAGTTCAGACCACCTGTAAGGTCATGCACAATAGAATTCCCCT CAGGTTTGGTAGATAGTGAGGAAACAGTGGCCGAAGCAGCGATACGAGAACTGAAAGAGGAAACTGGTTA TGTAGGAACAATAACCAGCATCTCTCCAGTGACTGTTATGGATTCGGGTATGTCAGCTTCAACTCTTAAT CTTGTTTTCGTGCAGGTAGATGGTGATGACACAGTTAATCAGAGACCAGTACCCAATTTAGATGAAGGGG AATTCATAGAAGTTATCCATGCACCTTTGCATGAACTCAAGCAAAAACTTGATGCATACAGTGAAGCAGG GGATTTGGTTGACTCAAGGGTTTACACCTACGCTGCCACACTCCATCAGTGCCAGCACAAAGGAGAAGAC ATGGATCTAGAGCAGCAGAAGGGACTCTACAAGAAATGATAATGAACGGACAACTGTAGATAGTAAGCAG TATGTCCTGGATGCCACACACCGTGGCTAGCCTCTTCCCTGTCCAAGCGTGGATTTGGATTTTTTTTGTC TTAATGCAGCCAGTCCTGATCCCTGACAGGTGCGGTCAAGTCACTGCAGCGGTAGAGAGTGCAGTCCACA ATATGAATCAAATCCAGTTTTGGGACTGGGACCAAAGAAGTTCCAAGCATACATGTAACTAACATGCGCA GAAAAGCTTCAATAAAGTGCCTTCTACCTCTACGGCAGCTTGGCTGCACTTGTTGGGGACCATCTGCAAT ACTTGGGGAACTAAATCCAAGTCCACTGTTGGACTAGAGCTATGAGTAGCCTTGATGAAGGCTAGACTCT TGATGCAACTGGTGTATGATTAACCAGTTATGATAAGAATGATAAAGCAGTCAACTCTCATTGGATAGTT ACAGCCTTGATCGAGACTCAACTACACCACACCATTTTTGGTTGGCCTGCAAGGGAAGATCCATCCGTCA TCATAAACATCTCAGTAATATATGCTGCTCTCACATTTTCACGGGCTAATATGGATTTGAATGCAAGGAT TAAGCACTACATTTGTGAGTCAAGTCAAGTCGCCCTAAAGGCAGTGACTCAAATTAAGTTGAGTCATGAG ATCAGCAAGGTCCAGTTAAGGCTAGTTGAGCCACAATGTGTGCTCGAGGCAAGTCAAGTCGGGACACATT CGTTGTCGAGTCAATTCAAGTCACTGCGATGAAATTTTCACACCATCTGTAGTATCACAATCTTGAGTGT ATCATTTTGCAGCACTTCTTGTGTAGTGCTGTCAATCTGCCGAACTGCCATTGGCCTTGCAAGTGCAAAC CAGCTTTCAATTTGACATGAAGTGGTAATAAGAAGTCAATGATTTTTTTTTCTTCACATTTTGTTAAGGA CTGAGTGTTGGTGAAGATTTGGCTTGAGTCAGATCAAGTCCTTTGCCTAAGTCAAGACATTTACTTGTGT ACATGTTTATGACGCCTGTCAAGTTGAGTTACCGAAAATAGTGACTCCAATGGACTTCATGATTTGAGTG GGTGATTTGATTACATCTCTGACGTACACTTGGCTTTGAAGAGGTTGATAAGATTTATGACATCTAATAT ACCTACTCCTTGAACTAGTCCCATGGAAATAGAGGGAACAATCTGTTTTGGATGGCCCTTCTTGTTTGTC AATAACAGATTACAAATAAAGTGAAAGCTGATCTTTCATAAGATCTTCTCCACTAGATCAGGCGTACAGG TACTGCAATTCCGGTTGGATTGTTTACTGCACAAATATGCCTACAGATATTAAGTGTGGCCTTATACTTT TTTAGTAATATATTTTGTAATTGAAATGAAGATTCCTAAATGATGACTTTAGCTCTGTCTAGATCTGTAG TATCAAAATTCAAAGCAAACAATCAGTTGCCAACTTGATCTAATTAAGTTTCCATTGTGACTTAAAGTTT AGGTTTTTTTTAAGCCTTGTATACACTTCCCACCTGGAATAGAAAACCACGTACATTCCATAAGCCCGTG GCCTTTCCTTGTGTCATACCAACAGTTTTTATGTCCCGCTTACCTTTCCTTCCGTGTTTGTGTTGGCGGA CAGGTAGTGCAGTCACTGTGGACCTCTGAACAAAAACATTCCACATATATAGTGGAGGTGAGACGACATT GTGTGTACCTTCCCAGGTCCATCGAAAACAGTTTGAGAGGCGTTTTGGGGGTTGGATTCTCCGTCGCAAA ATGAAGACGAAAGGAGAGGAAATCATGATGAAATTGGGTTGACAGTGTGTTCACATTGCGAATAAATTAA AAGGAGTTTTGTTCTCCAATTTTTCTTAGCTACATGAAAAAAAAGGAATGCCCCCGCTAGGTATGTATTT TAAACGTGATCTTGTTATCCTTTATGACTGAGGATAACAAAAAACCAAGGACCTGAGCCAAATCCTTGGG AAGTTTTTATGTACAAACTTTAGTGGATGTGTTGAGAAAAAGTACACAAAATTGGAACAAAAGGAGGTCC TCATAAGTATAGGATAACACGACTGGTTGTGTGCATGTGTTTGCGTGCAAGCAATCAGTGTTCCCACCAT AACTCAGGGGTGTGAAATCTCAGCTTTAAAGCTGATTTCAGGTTTTTTTGGTTTTGGATTTCAGCTTTTT TCCCTCACTGTTTACAAAAGTACAGGAGGTTTCCAAAGTTCAGTTTTTTTACACCTTTTTCTGCTGTTTT CAGCTATTTTTATCAGTGGTCACTCACACCCCTGATAACTTGAGGACTTGACATATCAACTTCAAACTTG GTATGTCGGTTGGTCTTTGCGTCATGTAGAGCCCTTCTGATTTTGGACCCCATATATCAAAGATGAAGGT CATTAAGGTTACAACAATCGAAATGGTTGTCACACGGTATTTTGATGAGAAGGACGGGGCATATCAACTT CAAACTTGGTATGTGGGTTGGTCTTGGTGTCCTGTAGAAGCCCCTCCCAGGACACTTGACATTCCAATGG CGGTGCCATATAATGGGAATAGTTATACGGTGGCGGGGGACTTGTTTTGGTAAGCACACCTTTTCTTGTT TTTGTTTATTTTATGCTGCAAACTGCAGCGTAACATTTCTTGAAATTCACACCTGCTAGAGTGGAACCAA GATAACCCACTGGTCTTTTTATGTTTTTAAAATACGTACTGTTTTTTTTTCACTAATTGGTTACTGAATT CCAAAAATGGTGGTGTTGGTCGTCTTCCATAGTGCCAATCTTCAAAGGGAATGAGTTACAGTAATTTCAA CAGTATCAAATTTTGTAATTATTTTATGTTGGGTCTTCCAATGTTATTATTGACTTATTCAGTTTCACAT TATTTTATAATGAGTATAACGTGTAATTTGTACTTTTTTGCTTTTAATTTGATGCATTTGTATAATAATT ATGCATACGCGGCGCAAAGGCATCTTTTGATGAGAAATCAGAGGATTGTTTAAGCTCATTTTCGCAAAAG AAACATGTAAATACTGACGCCACAGTATTCAAATTGTAAGAAATTATTTCAAGAAATGAAATAAAAAAAT ATTGTGATATGATTACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds