Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038197959.1 PREDICTED: Patiria miniata signal peptide, CUB and EGF-like domain-containing protein 1 (LOC119726279), transcript variant X6, mRNA CTTCCTGTGATACAGTCATGACGGTGAGGCTCGGTTAGATTTGGCACTAAATCCAGCTGGTTAACCATAA CGTTTGTGTACAAAATACCGAGACTGCGAGTCGTGTGTATAGTCACCCCTCGCCAGCAACAGTTTATTTA TAAACCGCTTTCACGACACTGATGTTCTGGTTTCTCTCTGGACGAAGACAGCGATATATCAAAACCAACT GGTCTCCTTTTATCGCTATTATTAACCTATTTTTTGGTAATCACGCCTGTTTTGTTTTAAATAAGACCGT CTCAGAAGCCGGGAAAGCATATAGTGATGGAGATTTAATCATAAAGGAGCAGATTTGTGCTGCAGGACTG CGTGTCGATTGTCTAAACTTTGACTGGATTTATCCTGGTTGCAGGGCCACCCCCTTGGCGATGCCGCGAG TCGTTGGTACGATCAAATAAACAACCGCTCGGTAATATAAACATATTTAACGGCATTTGTGGATGCTTGA CATGTTTACGGGGCCATTTTGGCAAGGCGATTGTCACTGCGCGTTTTGGGGCGGTAATTAGTTCGAGTGT ATAGTGCACACTGGTTGGCAACGTAGCCCGCCCCTAACAAGCCCCATGTTGGCACCCTCCAGAAAAAGGG GATCTACAAAATAAAAAAGTACCAACCTATACAGCGTGTGTATACCGACCAAACAGTGCCGGGATTAGCT CCAAATCTGGCCTGGTGTATTCAGGGATTTTCTCCGGCCGCCTGAAAAGACCGTACGGTTCTTGTCTAAA TATTTACTCTTAATGACTGCATTTCCGTTGACTCGCGCTGAAAGTCTTTTTCTCTCTTTATATTTTTAAC ATGCGAGGTCCAGGAATGATTGGTGCGACCCTGCTTCCATTAACGAAGGAATAAGGGTGAAAGAACCTTC GACTTTTGATCGGTTTTTTTAAAGACTGATTGGCGTGGTCGATTGTGTAACTCTTCAAAGTATTTTTGGT GAGTACTGCCTTGAGCTTAGTTATTTGGGAGATCGAGAATCAACCCTTCCGGAGATCTAGTACGAGACTT GAGCGGTCACTTACTCTGACTGACACGGTGGATGAAGCTTCGCTGCTGTTATAGTCGTGGATGTAGGAAG AGTACAAGACAATCGTAGATGACAAGAAATATAAAAAAAATGGAATTGGAGGAGAAATTAGCCAAATGAA ATATGACAGCGCCCAACATCGTCGCCCTGTCAGGATTACTGCGGTCGGAGCCACACCATGTCCCTCCTGT CTTCAACCTGTCACAAGATATTAGACCCTAAGCTCCCATCCTACTCTACTGGCTAGCACCAGGAAAAGTC GACCCTACTTCCCCCGTGATTGGCAGCTTGGAGCCCGGTCGAAAATTGATCAGCTCCCCGGGTGCCGTGT TCACGGAGATTAGGCCCTCGGCATGACAACTCGGTTTGGGGCTCCCTGAATGACAACTCCCACATCCTTT CTTCCACCCTTCAAGTCGTCACCCCCTCAAAAAAAAACCGGAAGTTTTTTTTTCCCTTCACCGGAGTTGC TTGAATTTCTTCAGCACTCTGGCTTGGGTTGTGGTCAGCCGTGTGGCAGGAAGGATTCTGCGAAAGAAAT TTTGTGGTGTTCTCTTTGTTTTCAATCACTCTCAAAAGATAGAAGTGGAGATGTTGTGGAGAATGATCGT ACGCGTCAAGAGAGTGTACATGATATGACGCCTTATATGGATGACGACACAACGACGCCTGCACGATGTC TTCACGATGACAGATGAACTATTCAGGGAGGGGTTGATATCTTATAACCCACCATTTTGGCCTCACGGGA CAACCAAGAAAACCCCCGTCCTCAATCCATGGTCAGCCGTCTCGCCTCCACGAATTATCGCCACGAGTGC CGAATAAACTAGTTACCAATAAAACAAAAACGATGCTTGGATGGACACGATGGAGCAATAACACGGTGAA TGGAAAGTCAAATAAACAATGCGCTTTCGGGACACAATTTGAGCTGTAATAAACTGCGTCGAGTTGGGAC AGCCTTGAAAAACTAGGCGAGCGTACCCCCTGACCAACAAAATTGGATGAGCGTGGTTTGCGCACTCAGA GACGGGCGAACTAACCGTGGGTCTACGCCAAAACACGCACGGCCGGAGTCCATGACCGACAAAATTACCG AGTTGATTCTCAAAATGGTCGGTTATCGGGCATTTTTGGTGGCTACACTCCTGCTTGTATGCAGTGACCT GGGCTTCACATCTCTGAAACGACTGAGCACCTACGTGGATTTACGGACTGGGTTAGTGGAGGGCGAGACG GAATATACCAGGTTTCTGGTGACACCGACGCCGTCGGCTACGGGGAGGTGTGACGGACAAGCCGTGGCGC TCTTGGACTTCTCCGGACCGTACAAAGTGGCCAGGATTGTACTGGAATATGAGCAGGAGCCGAGAGACTG GACCTTGGATATCTCGGACTCGGCCAGCGGGGATGGGTTCGGTGGGGACGGGGAAGGGAGCAGTAACATG GCCGAGACGCAGATACTGAACCGACAGATGCGGGTGTACAGTAACGCCCTGCCGGGCCACACGGTAGCGA CCATTAATGGCGGGCTGCTGCTCCGCGTGGTCGATGACGTGGTCTCGGTTGGTACCACTCTGGTCCTGGA GATCTCAGATGAGCGGCTCCGGTGGAACAATCACGGCTCAATCCGGGGATCGATAGAGAGCCGGCACCTG TACACGTTATCAGGCCAGACTGCCTTGTACGGGCAGGTGGATTATCTGATCTACGCGGGATTTAACCGAG TACCAGCGACCAATCTGCGGAACGGAACGGGTCTGTGCTCAGCTACCATCATGATGGTCAAAACTAAAGA GGAAGATGAGTGCAATGATGGACGGCATACTTGTGAAGAGAACGCAGTTTGTACGCAGACGAGACGCTCC TACAGGTGTGCATGCAAGAACGGATACAACAGGCAAGGCAGCTCATGTGTTGATGTGGATGAATGCAGCA GTAAAAATGGCGGTTGTGTGCACACGTGTACCAACATACCAGGAAGCTACTACTGCGGTTGTTTAGCGGG ATTCCTCTTACATCCGGAGGGAAAAGATTGCATCGATCAAGATGAGTGTGCATCCGATCAACATGGCTGC CAACATGAATGCATCAACACTATTGGCAGTTACATGTGTACTTGCCCACAGAACTACTTTTTGAACGCAG ATGGGATGACATGTTCGGATCACCCGGGTTGTGGGAATGCCAACCTTGGCTGTGGTCACTACTGCGTGGA CATCGCCAATGACCACTCGATATGCCAGTGCCGACCGGGTTTCATGCTTGCTGGTAATAAAAAGAACTGC ATACCGACCTGCATGCACGGTAATGGTGAGTGTCAACACATCTGCTCCGACTCGCCCATCGGTCCTCTCT GCAGCTGTCATGAAAAGTATAACCTGCACACGGACGGAAAGACTTGCGTAGGTGATGCTTTCTACCTAGA AACATGCGGCCTAAATAACGGTGGTTGCGATCGAGTTTGTTCCGACACGCCCACAGGAGTGCGCTGCAGC TGCCCGGACGGATTCGAACTGCAAGTAGACGGCAGAACGTGTAGAGATATCGACGAGTGTGCGATGAACA ACGGCGAGTGCGAGTATCGCTGTACCAACACGATCGGGGACTTTGAATGCAGCTGCCCCGGCGGATATAA GCTACTACGAGACGGCCGGTCTTGCGTGGATGTAGATGAATGCTCCGTTAACGCCACGTGTGACCACACT TGTCTTAACTACCCTGGGGGATTTCGCTGCTTATGCGATGACGGATACCAGGCGTATGGCATCACCCATT GTGGAGACATAGACGAGTGTTCCATCGATGCTGGTGGCTGCCAACACATGTGCAGAAACCTGCCCGGCAC CTACGTGTGCGAATGCCAGCCTGGTTACCGTCTCCACCACAACAAGAAAGACTGCATTGAGATATCTCGA TGCGTGCCACTGCGCCCGCCTGCCCGGGCCATTCTGTCCTGCAGCACCAGTGACGACGAGGAGACTTGTT CGCTTAAGTGCGAGTCTAATTCTCACTTCACCTCGTCCGGACGGAGAGCCTACACCTACCGGTGCGGGGA CAGTACCGAGTACCGGTGGACCAACGGGGTGAACGCCACGGAGCTACCGCTGCAAGAGGCGGACGAGGCG CTGCCGAGTTGCTCAGCCTCAGTGAACGCACCGACGTACCACCACAAAGCCCGCTTCACCTTCACGGCGG AAGACTGTGAGTTACGCCGCTTCACGCGCTCCGAGTCCGTGGTATCGGATTTCCTAAGTAAGAAGTTATC AGAGATTGACGCCGACGGCTGCAGCGGTCTTTGTGAGGTGAACTTCGTCAACTTGACCTGCCAGAGCGAC GGTGCGAGGCGCGGCAAGCGACGGACGCGCAATCGCAGCTCCCTCATCTTTGCGGACTTTGAGATTGCCG TCAGGCCAGAGCCACCCACTGCCGACTGTGATGTGGACTGCGTGACGGCCAAGACGAAGAAGAAGATGCG CAAGACGATCCGGAAGCTGAAGTACGCCATCAACAAGGAGCATCTTGTGGTGACCTTCAACGAGAACACG GAGTACCGGGTCACTCGCAAATCCTTCCGGACGACATCGGACGTGGAGACGGCCTGCCAGCCCGGTCATG TCATGGTCAAAAACAAGTGTGTGGCGTGTAGCGTGGGAACATTTCACGAGACCTTCTCGTCCCGCTGTGC TCCGTGTCCGCCGGGGAGTTACCAGGACCAGGAGGGGCAGTTAGATTGCAACAAATGCCCGCAGTCCGAC AACACGGGCATAGTCGGGGGCTCGGATATATCGCACTGCGGTGGTCAGTGCAATCCTGGCGAGTACTCTG TCGATGGCTTTGCTCCGTGTCAACCGTGTCCAATCGGGACGTACCAAGCAGAGAAAGGCAGGACGCATTG CATGAACTGTGGGGGCGAAATACACACGCGGTCAACAGGATCCACGTCATTCGCTGATTGTTTGGCGGGA GAGAAATGTACTGCCGGCAGTTTCTACGACGTGGTGCGGCACGGGTGTTCGCTATGCCCGACGGGGACGT ACCAATCGGAAGGGCTGATGAACTACTGCGTGAAGTGCCCCGGTAATACGACAACGGACGGCGATGGAAC GACAACAGCCAATGAATGCAAAGATAGGCGGTGTGGCGGAGTGATCGGCGATTATGTGGGCTACATCGAG AGCCCAAACTACCCCGGTGATTACCCATCCGGTATGGAGTGCGTCTGGCGGGTTGCGGCGCCCAAAGGAC GCAAGATTATCGTGGTCGTGCCCGAGGTTTTCCTACCGGAGGAAGACAATTGTGGGGACGAGATTGTCAT GAGGAAAACAAATTCACCGCAATCGATGACAACCTTCGAGACCTGCAAGAACGTGACCCGACCAATCGCC TTCACCGCCCAGACTAGGAAGCTTTGGATTCAGTTCAAGTCGGACGCCTTCAACTGCCACTCCGGATTTC AGATCCACTACGCCACCTACGATGAGAATTACGAGGAGCTTATTAAAGATATTGTCGGGGATGGCCGGCT GTACGAGTCTGATCATCACCAGGAGATCCTTAAGGATAAAGAAACGCTGACAGCCTTATTGGAAGTGATC GCTCATCCCGAGATGTACTACAGATACAGCCAAGAGGAATCCATGAACATGTTACCGCACTCTTTCATTA AGCTCCTTCGAGGGAAAATTTCACGCTTCTTTTACCCCTGATGACGTCACGATGACGTCACGATGAGTTC CCGTCGCGTCCGTGTATAGTATATCTCCTTTGTATTATTTTGTAAATAAATAAAAACCGAAAGGCAGTAA TGTATGAAAAAAATGTATTCCATATTCTTTTTTTTTATCGAGAGTTTATTTTTAGGTTTTGAATTGAGTG TACATGTTCTGAGAGCGATTTCTTATATTTGTTGATTTTCTTCTTTTTTTTCGTTTGAGAATTGGCACTT GTGCTTAAAGGTGCTGTCTTGTGAATTTCTGAAGTTCATTGGACAGTGTGTTCGTTGGAGCGCAGGTGGC GATTGTTAGGCCATAGACATTTCCTTTAATGTTGTAACTGTTTCATGAACTCTGACGACTTGTAATCCAC AGAGGTGGAAACGTTGGACAATGTTGCAGTGTTTGCAACCAATAGCTGGTGCAACAAGCAACGAATCCCA CATCTGGTTTTGAATGTACTTTTCCTAACTCAACAACAACACGTTGTTGAATAAGATGTTTATAAATTAT GTGATTCTGTTGGGTTTTTTTTCTCTTCTGTTTTTGTTTCATAATTCCAATTTTCATTGTTTGTTGCGCT TTTCTCATTTATTTTTCTCCATTATTTGTCTGATTGTATTTCCCCACATTCCCCATGATCATTTTGGTTT TGGTTTTTCTGTTGTGGTCGCCGGCAGCAAACATAATGGAACAAAATCGTTCTGTTTGCCTCTGCTTTAA GTGTGTACGGCTATGCACCCTCAAAGACTGTGTACTAGTGACCCCGCCCCTTCAATGGAGAGTTTGGAAA TGCTTTTTAACTGTTTTTACTTCCCGAGATTGCATAAGTCGTACAATTATCAAATAGAAAAGTATTAAGA AAATCTTGTCTGTGTTGTGTGTGTGCGTCGCGCGGCGACATTAAAATTCTTAATTGTGGTTTTTTTCAAT AATTGTTTAAAGGAAGCATGTAAGCAAATGTGTATTTTTAAGGTAAAGGATAATGTAAAAATAGATACAA TCCTTATCAATACCGAGTGATATATAAGGCATTATTACCACAAAGTATTCGCGAAATTGTGGGCTATATA AAGATAAAACAATATGCAATTGTTACTAAACCGTTAGAGGAAATTAATGAAAGCAGCGTATGCGTGACGC CACCTTTGCTACTTTGCTCTGCAAATCTAGTCTCATTTTGTACCTATCGTAATTTTTAAACAAAATATTT CTCCGCGGAAATGTCATTTACAATTGTATATTACTATAGCTGTTATAGAATTCCAAGTATAGATTCTTGA TATTTGTTTGTTTGGTCAAAATGACCACTAGCGTACGGCTTTCACCAATATTCATAAATACCTAAGACAG TTTACGCATTCCTATTGGTCGAGAGCCCGTCACGTGGCCGGTCTTAAACGGATGATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds