Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038197750.1 PREDICTED: Patiria miniata serine/threonine-protein phosphatase 4 catalytic subunit (LOC119726133), mRNA CTTTTATATAATTTTCTGAACTTAAAAAAACTTCGTAAGTTGTTTCATCGAACTACACGATAATAATGAT AAGTCCAAAAATATTTCAATGCGTCACAAAACGAAAGGGCGCCACCATTTGATTCACACCGTGGTCGACC CAGGGGTTACGAAAAAAACAACCACAAACAGGCTGTAAATATGGGGGACTGTAGTGATTTAGATAGACAA ATAGAGCAGCTCAGAAGATGTGAAATAATCAAAGAGAGCGAGGTCAAAGCACTATGTGCCAAAGCGAGAG AGATTTTGATTGAGGAGAGCAATGTTCAAAGGGTAGACTCACCGGTCACAGTATGTGGAGACATTCACGG CCAATTTTACGATTTAAAAGAACTATTTAAGGTTGGTGGCGATGTCCCAGACACCAACTACCTGTTCATG GGGGACTTTGTGGACAGAGGCTTTTACAGTGTGGAAACATTTCTTCTTTTATTAGCTCTTAAGGTACGGT ACCCAGACAGGATCACGTTGATCCGGGGTAACCACGAGAGTCGACAGATCACCCAGGTCTACGGCTTCTA CGACGAGTGTCTCAGGAAGTATGGCTCCATCACTGTCTGGAGATACTGCACGGAGATCTTTGACTATCTC AGCTTATCCGCTATCATTGACGGCAAAATCTTTTGTGTGCACGGTGGTCTGTCGCCCTCTATCAACACGT TAGACCAGATCCGCGTGATTGACAGAAAGCAGGAGGTTCCCCACGACGGCCCCATGTGCGACCTCTTGTG GTCAGATCCTGAAGATACCCAAGGCTGGGGGGTCAGTCCGCGGGGCGCCGGCTACCTCTTCGGCAGCGAC GTGGTGCAGCAGTTCAACACAGTCAACAACATCGACATGATCTGCCGGGCGCATCAACTGGTCATCGAGG GCTACAAGTGGCACTTCAACGAGACCGTGCTGACAGTGTGGTCCGCACCCAACTACTGCTATAGATGCGG CAACGTAGCGGCAATTCTGGAACTAGACGAGCACCTCCAAAGAGACTTCACAATATTCGAGGCAGCCCCA CAGGAGATAAGAGGGATGCCAGCCAAGAAGCCAGTACCAGACTATTTTTTATAAGGGCCTTACATAGACA GTTGACACAGCACAGAACACGGGGAACCCTACGAGGTATGACACCACTTGATCACTGGTCGATTAGAACT CTATAGTGTCTCGACAGCAACCAATCGGTGACCTCCAACTAAACAGCTAGGGAGAATCAACCAATCAGAG ACCTTGTACTGCAATCCCCCTGGACAACTGACCAATGATTGACTTTGTACAAAGACAACCCCATGATGAT TAACCAATCAGTGAACATGTACAATAACACCATTCTAGGACAAGAACCAATGAAATGACTCCATACACTG CCATCCCTAGACACCAACCAATCAGAGACTCTGTACAATAAAGCCAAAGGACAACCAACCAATCAGTGAT TTCGTATGATAAGACAAACTGACAACTGACAAAATGAATTCCTATGTAAAAAAAAAAATCCTAAAATTAT TTTACCAATGAATATGAGGAATTTTTCATAAGAAGATGACTTTGTTTGCACATCAAATTGACATACATCT TTAAAAAAAATAGTGTGATTACCAAAAAAAACAAACTTGTAATTTTTAGAGTGAGTACCCAGAAAATTAA CTACTTTTTCAGATTTCAGTAAATTACATTTATCCTTTCCAAAGATATGTTAATTTCCTAGGTAGACCAC AATTCAAATGTAATTTATAACAGAAAAAAGAATTGTTGTAGTAACTTCATTTTGTTGATTTTTATTTTAT TAACTTGTATTCTACTGCTTGTTGTGGTCACACGTTCACCCTAACCCCTAGGTTGATTTAAAAGGAACCT TCCTCATCCTTACAAATTCCAACACAATAAATTTGGACCGAACAAAAAATGGTAAATTTGGAGAAGTAGT TGAAACATAGTTAGGTTTTATGTGCACATAAACAGTTTTCTGTTTCTGTAAAGCATAATCAGTGTACTAG TACAGTACTCATCCTAACAGATTCCAACAAACCCTGGTGTTGGAGTTTGATTGGATGGGGATCGTTAGGT CAAACTTGCGATATTTTAAAGAATGTGTGTAGTCTTTGTATAAGGCTGGATTTGTCTTTGTTTTTTTAGT CTCATGCAGCCGTTTCCTGAAAAGTGTGGTAAAGCCGTTGCAGTGGTAGAGATGGCTATGAACAAGAGGG ATCAAATCAAATCTTGGGAAATTAGGCAATGCTATCCAGAAAAATCCCAAGCATTCCTCATGCGCTCATG TATTGGAGGTGTGCTCAGATTTTCCTGGGTAGCACTGCCGACATTCCCAAGACTAGCTTTGGTCCATCTT GTTGATAATGACCTCTACTGTCATAAAGGCTTTTTAGTGTAATTATCGGGGACGAACTGTAGAAAAATGA AACAAATTCCGTCTTCAGCCAAGACTACAATGTGTGCAGCAGTTTTCTTAAACTTGTTATGTATGTCGTT GATGGTCGATACTAAGGTAAGGTGTGTTCTGGCAGGAAAACAAAACCAATTTTAATTTTATTTTTTTTTA ATTGACAGAGAAACTTTTCAATTTCTCTCTTGGACTTTAAAATTAATCTTGTTAGTTTTGAATAAAAGTG ATATCTGTGGATTCATGAACGCGAAAATTAGAGCTATGGAGTGCCACACCTAAAAATGAGGAAGTGAAAT TTTGGAAAGATTTAGGGTCCTATTCGTTGGAAACTCCTCTTCCCCTATTACGTGGTGATCCTACCACATT TACGGTTTTTTTACCAGGATATCATTACAGTTTTTTATAGAGCTAAAATTCAGTATTGTGTGCTGCTATT TTTTTTTTTTTTTTTTCAATTTTATTTTTTAGAAATATAGTTCCCAACAAAAAAGTTAGAAGTGTGTGAG AATTGAACCCCGAATCTGCCAAATTTAACTCAAAAAGCTGCATTATGTATGGGAAGTATAAGAAGTCATG AAAAACTGGGGGGGGGGTAGTTTTGGGTTTAAAACTCTGATCTTTTAAAATTTGGTTTGAAATCAGTTAT TCGGTTTGGAATTTTGCAGAACCCTGATGTTCGAAAACAACCTTCACAAAATATTATCTTCCATTTTTGT GTGACAAAAGTTAAAATACAACAACTGGTACGTCCCCTGATTTGCTCCATGTTCTGTGATAGCAACTGCA TTCACTCGCTGGCGGTCTTTTTCATTTAAGAATAGCCTCTGGAGTGTTTTTGTAAAGGTTCAGCGGTCAT TGAATCCTGCAAACTATACCCAGTTATTGTGGAGGGCATTTCATGCGGCACCTCACTCGTCACTTTTTTT GTTGGTATGACTATGAGCTTGATGAAAGCTTCCGGTGAAATTGGATAACCGTTTACTCAGTTTGGAAACA AATTGCATAACCGGATTTTGAAATATCTGATTTCTCTCACCACTCATGTTTTTTTTGTAACCACGTACTT GTAGGTTTTTTTTTATTTGACTAGCATGTGATGGGCGTAGCTCAAGTGTCACAGTCTGTGAGGGTTTCTT TCCCTCTCTGTGGGCGTGTCAAGGTCACAGGTCATTGCATAAATTAATGCTGACTAGGAATTCTGCAGTA TTACAATTGTTACTCCAGTGTAACTGTCACCATGAATATTCTAATCAGTCACAGAAAAGTTTAATTTGAA GTACTCCTTACACCGGAAGTAAATGGAACAGTCCAATAAGCCCCGCCCACTGCGCACGGCTGTGATTGGT CGAAACGTTATTGGGTGGAGCTTAATAGATCTTTGACTCTAAATTGTGTTATAGCGAAAAAGAAAAATTT GCCATTATCGATGGGTGTCGTAAAAAAAAAAGTAGCAGGCAAAACAACATTTTTTTTCTGAAGAAACTGA ATTGTTTCTTGTACAAAAATGTTACCACGAGATGATAGTGTTTCTTTACCCTTGACAGGATTTTTGTTCT GTGTGATTTGGGCCTTCTGTTTAAAAGTTACGGCAAAGCTTGTAAAGACTGTCCAATTCTGTTTGGACCA CTTTCTTCACCTTGGTATGTGAATGCCTTTCATTGGATACGAAGTGGCCCAACTTGGAATTCAAGTCCTT TCATTTAATTAGCTGTATTTCTGGACTGGGGTGTCCAATTGAGATGGGATAAAGACCATTGTGTAGAGTA TTTACTACACCTTCAGACTCTATAGATAAGTTTTGCAAAAAGAGAGTGTTAGTATTTTTAATATTTAGGG ATTGACTGCTACATTTTTTTGAGACGCCCTACACCCTACATTACTTGTAGTGTTACTCATACAGTTTCAT TTTCATTGTCATATGCCTAATTGATTTCATTTTCATTGTCATATGCCCAATTGATTTCATTGTCATTGTC ATATGCCCAATTGATTTCATTGTCATTGTCATCTGCCCAATTGAACTAAACTTTTGGGTTTTAACCGAAA GTGGCGATGTAAATGGATTTTAAAGTGTGGATTCTCCTAAATTCCATGTGTTGGCATTATCACATTATTT GAAATCCATTTGTTTGGAAGACCCCAATATTTTAATCGTTGAATCGTTAGTTTAAAACTTGAGTTGAGCT GAGTTTGCACACTGAAGTTGAAACAAGCTGTTATGGGGACATAACAAAATGCGAAATGTTTAACAATCTC GTCGAGTGCAAGAAGTTGCTAAATTTGTCATCAGTCATTTTGAAAAATTCTGATCGACTAGTGGTTTCTT CGAGTTCAACCTAAAAATTCTGTTGATTCGCGAATGAAATTTCCCAACAATACCTGCTTTTTAAAAAATT TCTGTTTGTGCATTCAGACTTTTTGTTGAATGAATTTTGACTGCAAGTTTACGATTGAATTTTTGCGAAC AATTGTGAAGAAGTAGCACTGAGATATGAATGTTGCAGGCATTAATGCCATTAAGAAACAAACAAAAACA CAATTTTAAGATTGGTTGTTTTTAATGTTTAGGAATGGGACATTGTCAACGCGGCCTAGATTTGTGAGGT TTTGTTTTTTATTAAGAGAGTCGTGTAGACGCTGAATGAGTTGTTTTTTCCTCCTTTCCTGCTCTTGAGA GATCAGGACGATAGTTCTAAATGGCTAGCCATTTCTAGATGTGAACCTTTGTGATGTTTTTAAGAAACCA GTACTTATGTAGTCTTTTAAATGGTCAGTTACCCCTGGTACCTTTGTCTGTAAACAGAGAAACACATTGG ATGAAGTCTTGGTACAAGACAGGGTCCAAACTCTGAAACCACAGTAGACTTGGCTCAAGGCTGACACTTT TTTCCCCTAAAGCAGCCGGTCTCTGACAAGTGCGGGGAACTTTGGCAGCGCTACCCAGGAAATTCAGAGC ATACCTCACACGTGTGCGTTAGCTTGAATACAGAGCATGTGGTGTATGCTGGGAATTTTCGGGTAGCACT GCCAAAATTCCCAAGGCTGGATGTGATTCAAGCTTTACTACATGTACTTGACTGGCTGTATCAGGGGAAT AACATCCAAATTCAGTCTCCGACAAAGACTACTAAAGCCATGTCGAAAATGGGTTTTATAATCGGTGGCT TTGGCTATTCTTATGCATACCGTCACTATGGAGTCTATGGACAGGCCAGTCATTCTGGGGGGTTTTGGTA ATCAGCAAAAAGAACAATGTTGCGTCAAGAGGTCTAGCACCAAGACTTCATTAATGATTTGAAACATATA AAAAGGCCAGCAACATGGCGTCTGCTTTTTAATTAATAAACAAAAAAGGAAAGGTAAACCCTTAGTTCAA TGACAAGTGATTTTTATGTATTTTTGTTTTCTCTTTTACTAAAATAGTTAACGATATAAAAACAAAAGTC GATTACCACCTGTGTATCATTGATATTAAATTAACAATTACTAAACTTGAACTTGAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds