Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038197559.1 PREDICTED: Patiria miniata glucose-6-phosphate exchanger SLC37A4-like (LOC119725940), transcript variant X2, mRNA TGTGCATCGGTCGTGCCGTTTTTCGTGCAACTCGGTTTTCAAAAACTCGATAAAGACATCGTGCTGTTGT ATGGTTTATAAATGGAGAAGCGACAGGATAGTTGAAGTCAAGTTTACGTACCCTAACCTACTTCAAGCAT CACATTAAGCTTCAGCAAGCATGGAGTCCTACATGGTGAGGCGTTCCTCCATCTACGTCACGCTGTTTGT TGGCTATTTCCTCTACTACCTGAATCGCAAATCCTTCTCCTTCCTAATGCCGTATGTCATTGAAGAAGAA GGAATGCACAGGAGTGAGTTAGGTGCTATCACCAGCAGTGTTTCCCTGGCCTACACCATCAGCAAGTTCA TCAGCGGCATCTTGTCAGACAAGATCAGCGCCCGGGTCATGTTCAGCAGCGGACTGTTCCTGACCAGCGT GCTGGTACTCCAGTTCACTGGTTTCCGGTCCCTGCAGATGTTTATGGTGCTGTGGTTCCTGAACGGCATG GCCCAGGGCGGCGGCTGGCCATCATGCTCAAAAGTCCTAAAGCAGTGGTTTCTACCATCAGAGCTGGGTC TGTGGTGGAGCGTTCTCTCCACCAGTGCCAATCTCGCTGGGGTTGTCGGGCCCATTTGTCTGTCTTTCAT TGCAAGGGATTATGGGTGGAGGACGGCAATGTACATAGGAGGTGTGTTAGGCATCGGCATGTCATGTGTG TCATTCCTCATGATCAAGAACTCTCCTGCTGAGGCTGGCCTGGAACCGTTAGCTTCCTCAGAGCCCACCA AAGCCACCTCAAGTAATAAAGACGCCTCATCAGATGCGAGTCCATCTGGAGATTCGGCAACTACCCGTGA CGTGATCAGCAGTCCCTTTCTGTGGGTCATCTCAGTCTTATTCTTCCTGACAGCCCTGATTGCCTATGGT ATCATGGATTGGGGCCAGCTGTATCTCATACAGGAGATTGGCTTTGAGAATGCTGTAGGAAGTGCATTCA CTAGTTCTTATTCCATCGGAGCCATCGTTGGCAGCATTGTTGCCGGCTTTGTTACAGACAGATTAGTTGC CAGGGCGAGCAAAAATTCTAAAAGCAGTCCTCGGTTTCCATGGTTCATGTTCATGGAGGCAGTCAACCTC ATGTCAATCCACATCTTCAGAAGTCTGGTCACCATAGAAACAAATAAAGTGTTGATTCTTACCATTGGTT TCCTGTTTGGTGTTGCTCAGTATGGAGCCTTCTCTGTGTACGGTGTAGTGGCCATAGAGAACGCACCTGT TCATTTGTCTGGAACCTCCCATGCCTTTGCTGCCATGGCCTGCAATGTTGGCGTTCTGATGGCAGGTTAC CCACTGACCTACATAGCAGAGAGGTTTGACTGGTCCGTAGTGCTGATGTGTCTGGAGGCCATGTCGCTAA CCAGTCTAATGATTCTAGTAGCTGCCAGAAAAGTGGAGGCTAGGATTGGAAAGCCATCAATTAAAGTGGA GTGACATGATTGCGGGTAATTTATAAACAGTGGTTGGTACTGTCCTTTTTCTATCAGTGTTGTTGTTTAT TCCGTCACAATTTAATCAAATTGGTTTCATGTTAATGACAAAAAATTGTATGTTTGAGAGCTTTTTTTTA CCGAGAGCAGTTAAAGCCCACCGCACACGAGAACGACATGCTGAGCGAAACGTCATCAAGGCCGTTTGCT CAGCACGTAAATGTAGATCTCAAAATATTCCCGTGTGCGATGAGTTTTTGCTGAGTTTCTGCCTCTCGAG GCCGTGAGGCAGATCCTGTTTGTTTTTTGTTGTTGTTTTGTTTGCCTTGCAAGGTGAAAAACTCACCTCG TGGTAAAACCTGAGCTATGTGATATCGTTTTTTCAATTTCTTCTAAAGCCTGCTGGTGTTTGTTTTTGTC CCTGTTGTTAAAATCATGCGACCGACAAACAAGGATAACCTGGCCACAACTCAACCAGCTTGCCCTCTAA AATATAGTTGAAGACAAAGTAACTGACTCTCAGCTTTCGATTGGGGCCGCCATCTTGAAATCTCGTGACC AGAGTATGTGCTTTCATTGGTTAGTTAATTTTTTAGCTCAGCACATAGCTCAGGTTGACCTCACAAGATA GGCGAAAAAAATCAAAATTTGCCTCATGGCCTTGCGAGGCAGAAAACTCAGCGAAAATTCACCGCAGACA GAGATGTTTTGTGAGCTACCGTACGTGCTGAGCAAATGGCTTCGAAAGACTTGTTGCTCAGCATGTAGTG AGGATTTTGCAGGTCTTGGGAAGGTCAAGAGAGATGCAACCTTTATCATGAAACGTTGTGATGATAATTG GGGCTCTCTCAAACAATTGGTGTTGATAAAATGTGAGACCTGCCCCAAAGAAACCCGGACACAGTTGCAG AAGTAGTTTTTGCACAAAGGCCATGTGAAGTCATTTTGGGGTGGAACAGACCAATTAGATGTTTTCAGAT TTTCTGAATCAGTAAATATAAATTTACAACCTCCCGAAATATTTACTAGAATCCATCAAGCAGAAGTGTA TTTTTCGGTTGATTCAATGAAGTCAAAAGCAGAATTTCATGAGTATATGTATATTCAGTATTCAGTAAGA AGTTTTTAACATTGACGTATAGATGTAACTTTTACTCGCAGTAAGTATTCAAAAAATTCAAGCCTTAAAT GTGCAACTCAAGCTTGCAATCAACAATTTGTCTTTTGCTTTTTGGGTCTGTCCACACTAACGGTTACAAA AGTGTGACATTTAGAGGGAACCATGGACAGGAGTCGATATATGAAGTAATACGTTAAGTTTTCCATCATT CTTCATCCTATATCTTGGTGAGAACATTACCCACGAACAAGTTTGATAAATTTCTCAGGTTTCGAGAAAT TACAGAGGATTATCTTCAAGATTTAACGTTCATAACATGGACAGACATTTCATTTTTAAGTGGTGGGAAG CAGTTAATAAAATACATGAATTATCCCAAATTTGTTCCTAATGTAAAGCTATCCATTTATCCATTGAGAG ATTGTCACTGGCCAATCTCAGGTTAAACCTCTAGATATTTTTAACTACAGGGTGGGCACATCTTCAAGAC TTCATGTTCATAACAGGGACAGAAATTGTGTCACAAATTTCTGTTCATTTTATGAACATGTATCAAGTCG CATCATAATTTCATAAATACTTAACAGGTTGCTTTAATGTTGAATGATACTAATTCTTCATTGAATGTGT ACTATAAATGGAACATGGGTGGGATTTATTATGAAAAGAACATATAGTATGAATCAAGAGTGCCCGTCCA TGTTATGAACATTATCCTACATTTCATCTTGAAGATGGCCGAGTAATTTCCTACATATCCAGTGAATCAG CCTTATTATTTTATCAGTGCAATCACGAATAATACAGGAATGTTAAAAAAAAAAAAAAATCTTAGCAAAA AAACAGCTTTGAAATCCACCTCCCATGTCTCACCCATAAAGTTACAAGTTGTAACTGTTAGTGCCGACAG ACCCTTTTCCTTTTTTCTTAAATTACCCGCAATCAGTGATTCTGTTCGTGTCATGTTCTTCTTTTGTAAT CGTTTGTATGTTTTTGTCTAATTTTGTAATTTTTCATTTGATTCTATTCCAATATTGTGCAATGCATTAA TTCTTCTGAAATATAAAAAAAAAATCAGGTGCTACTTCAATATCTTTGTGATAATTAAGAGTAAGTGTTA TGAATGTGGAAAAGGTAATCTAGAAATGTTCACTATGAAACCTTGAAAGGCATGTACATGTAGATGTAGG ATCATTTAAATAATCTCAAACGTAACCCACCAAATTGCTATCAAGAACCTTACTTGGATTAAAGATCGAA CTGGTACTAAACACCCTGTGAAATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds