Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038194721.1 PREDICTED: Patiria miniata coiled-coil domain-containing protein 39-like (LOC119723842), mRNA GCCCCGAAATAAAAGTGCGAATACCGTAACCACAGCAAACAACGCATAATAAGTGACTGCTTCGCCAGTA AAATGAACTTGCATTGAGTGTTTTTACTTTGAAATCATTTATTATTGCTTATAATTATATTCAGTTATAG ATAAGCATCCGCAAAACAAGAAATCCATCTAAAAGTAACCTGTTTTACATGTAGGTTTTTGCAGTTAAGT GCATTTTTCGCTGAAGTCTGTTTGACCAGTCGACTGGATAACGTCGATAAACGTCAACGAACAACTGATT ACTGAACCGGCAAGATGAGCGTGAAAAGTGTTATAAGCGAGATGGAATGGGACGGTGGGATGAAGGTTCC CGTAGCCAACCAAGAGAATAAGATGCTCGAAGAAGAGGTCCAGCACAAGCAACAGGATGTAGTCAGATAT CAAGCTGAGCTCTCTGAGCATGAGGATCGGGTGTTTGCAATGTCTGAACATATGAAGAATGTGCAACAAG AACTCAATCAGACTCAGGCTTTGAATCGAGCTCGAGGCAGAGAGTTGGAGACAGAGAAACACATGATGTT GGTAGCTCAACGTGAGTGTGGACGCTTGAAACAGGAGATCCAACGACTGGAAAATGATCTGGCTGATATC AAGGAACGCAGGAATATTCATGAGAACACCATCTTCAAGAACACTCAGAAGTTAGAGGAGCTGAAGTCAC AGTTGAATTGGGATCAGCAGGCATTAGAGGCTTGGCTGGAGGAATCCGCCAGGAAAGATGAAGACTCCAT GACATTAACCAAGTATACTCAGATGGATGATGCTAAAATCAAGGAATTGTCACTGCGTATGGAACGTATG ACTGACGAAAGCCATAAGAAGAGGAAACAACTAGACCATGAGATGACAGAAACACTGACTGCACAGTTGG AGTTGGATAAGACAGCTGAAGAGTTTCGCAAGGCACACAATGATCGTCAAGAGTTGATCCGACAGTGGGA GGCAACTATTGAACAGATGCAGAGACGAGATAAGGAGATGGATATGCTAGCTGATAATCTGACGCAAGTG AAGGCAGAAGTGTTTGAGCATGAGAACAATGTGAAGGAGAAGCAACAATTCCTAGAGAATGAGATTGAAA ACAACCAGGAACAACAGAAGAAGTTGCAAGGGACAGATCGGGCAGCAGCTAAGCTACGACTAGACTACAG AGATGCAGAGACACAACGCATTCAGTTTCAGGATGAGCTTGAAACTTTGAAGTTTACTGTGGCCAGAACA GCAACAGACCTGGAGGGTATGAGACGACAGGTCAATGACTTGAAGAAAGATGTGGATGACAAGAAGAACA GGGTAGAGGATGCTAAGGATCATCGTCAAGAACTGTCGGCCAAACTCAAAGCCATCACAGATGCCTCCTT GTCAGCAGAGGAGAGAGCTGCCATGATGGACAGTATCCTGAAAGATGAAGAGACTAGTCTTCATCTGTTA GACCAGGAGCTGAAGAGACTGCGAGACCTCCAGTATAAGAAGGCTCAGGAGCTCTTTGAAGCCAAGACGA CTGAGAAGAACACTCTGGCTGAGATCCAAGGCTCTAGGGCAGCTAGCAGGAACCTGAGTAGTCGCATCAA CAAGCTAGACCATGACTCCCTCAAGCAACAAGAGATTATCTACAATCAGGATTTCACTGTTCAGCAGTTG GAGCGTCGTATTGCTCGCATCCAGGGAGAGCGTAGTACTGAGGAGATGGATCAACTGAATGCTCGTATCA AGGAACTGACTGCTGTACTGGAGGAAAGAACTAATACCTACCAGCTAGTCAATACTCAGCTCAAACGACT CCAGGATGACATACGCCGAGTGAAGCGAGATTTGGACAAGAGTGGTACAGAGAAAGCTGACCTGACCAGT AAGATAGAGGAACTCAACCTGCATAATGATAGCTCTCAGAGAGAACTAAGACGCATCAAACTCAAGAAAC AGGACCAAATGGTAGAGGAGAATATCTTGAAGTTGGAGATCAAGCGTTTGAGAGACCAGCTGAATTCTCG TGCTGATGATGTCTTCTCCTTGGAGAATCGTAGACTACAACTGGAAACGGCAATGAAAGAACGCCACAAT GAGATAGGAATTCATAAGGAGATGTTGCAAGCGCAACTAAAGGGAGCTGAAGAGGAACGTGGCACTGTTA GCGCTGAGCTGCATGAACGCATTACAAAGATTGACAAGCTACGCAAGAGATATGAAATCTTGATGGTTTC CATGGCTCCACCTGAAGGTGAAGAGGACAGGTCTCAGGCATATTATGTCATCAGGGCAGCACAGGAGAAG GAGGAGTTGCAACGTAAAGGGGATGAGCTAGATGCTAAGATCCGTAAAGCAGAGAAAGAGATCAAAGCAT TGGAGAATACACTAAGACTGATGAACGGACGCAATGAGACATATCGCAAGAGCTTCAACAGGGTGACTGA ATCTAGTGAAGAATTTGAGGAGAAGCAGCGATTAGATGAACAGCTGCGTGCAGCCATGGATAAATACAAG TATAAGAGACGGCAGATCAGGGAGTTGCAGGATGACCTACAGACTATGAGTAATACTATGGAGAACTTGC TGCGAGATCAGAAGGCATATGAAGAAATGGTGGAAGAGAAAGAGAACAAGCAGCATCAGATGATACGAGA GCATGAAGAGCAGAAAGCTAAGATTGAGAGAGTCTCTAAGCAGATGGCTCGTTATGCCAGGGAAGTACGG ACAGCTAAGAAGGTTAAAGGAGAATCTCATGAAGAGAAAGATTTTGGATTGCGTGAGCTGAGAGACTTCA ACAAGAATATCAGCAAGCAGATTGGTGATGTCATCCACAGTCATCCCGATGTCATCCCTACCACACACAT GCTTTTCTCACAGGCTGGTTTGCAAGTACCTCCTACACCAACAGGCAGTGCTAGAGGTTACTCCAGGCCT GGCTCAGCATATAGTGCACGCAGCAGTGCAAGCCTTGGATCACCTAAGACCCCCTCCTCAGTGCGTAGTA GCCCATCTAGTCGTGCCAGCAGTAATGGAGCCATACACACAGTAGATCTAGGTGGTCTTCAGTCACCTCA GCAAGGTAGCCCAGGTAGATCAGGCTCACGGCCAGCTACTGGAGGTAGTCAGGGCAGTGTGCGTAGTGGG CGGAGCAGTAGGCGCTAAGCAAGCCTGCCATTGGACAGAAATGTCCCAGGGTACATGTCGATAATTGAAC AAGGTCCTGAAGATTACTTGGAATAACTTTGCCAGTCTTTAATAATAATAATAATAACAGGCATTTATAT AGTGCTTTTACAACGCAACGGGGTATCAAAGCGCTTTACAATTATTATTTTCCCTGTTTCAACGAGCAAA CACTCCTGAAACCTTCTCGACTCCCTAGGGAGCATACATGGCCAGTAGGCAGCCATTTCAGCACCCTTGG CCGTAATCAACCTCTCACAGTCACCAACACTGCCCTCACAGGTACCCATTTACTCCTGGGTGGAGAGAAG AAATGGGTGACAAAGTGCCTTGCCCAAGGGCACACGCACCATAACCCCAGGCTGGACTCAAACCCACAAC CTGCAGGATTACCCACGGACCACAAATTGAATGCTCCAGCCACTAGGCCACAGCACTCCACTGTGGAAGG GAAAACAACATGGTAAAGTGGGGGAGTCATGGTGGATATTACTATCAGCCATACGTACTGGAAGGGAAAA CAACATGGTAAAGTGGGGGAGTCATGGTGGATATTACTATCAGCCATACGTACTGGAGATAAAAACTGAA CATTTTGTTTAAATTGATAAGATTGTAAATGCGTCTAGCCCATTCATCTGTAAGTGCACAGTTTTGATAA GAACGGGGCCAATGAAAACACACAGGCTTGGCTTCATGCAAACAGAGTGCTATTTATTAGGATTCAAAAA AAAATATTGAAATTCTTGCAGAAAATACTTTTCACTCTTTATTATATCAGTACTTGTTAAACACATGTAC GTAAATACAACTGTTACAACAAACAAAACAGACTCTAGATATTCTTGTTAGTGATCAGAGAAAAAGTATT CATTTTAACTTGATTCCATTTGGTAAAATAGAAAGGTACCATAAATGTAGTAATTGACATATTGGATAAT AAATAACTTTCTTTGCTACACATTTAAAGATAAAACTGTTCAATTCCATTGAATGAAAAACATGTACCAA TTCTAACTGTAAATGTACATTTATTGAAGTTTGTGTATTTCTTTGTAATTTAAATTGTTTCATTTGTAAA TAGAGATGTTTTCTAACTACATACATATTTGATGTGCAGTTAAGGAATGTATAGATACATGTATAAGGTT TATAAATGCGACTAATTTGCGTGATTCTGAGCATGTAGTATACCACTCCAATGGATCCACTTAGACACGA TAGTATCTGAACTAGCTTCCAAATAATAGATACAGGAGTTGACTCAGACTGTATGGTTACAAAATTAAAG AATTTGGCAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds