Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>HP106685.1 TSA: Patiria miniata isotig02555.Pminagast mRNA sequence GTGCCTTGCCTATCCCCTGTTGCGTGTCTCAGGCGAACTTTTTGGAAGCCGGAGGGATACATGATTGTAC AAATTTGAAGAATTAAACACTTTAAGAAACCGCGGTACTGACGACAAAATGAAGTTGACATCAGCAGGGG GTGTTATTTCCCTCCTTGATGAACCAGATACAAAGCTAAAGATCTTTGCTCTGGAGAAACTCAATCTACT TGTGGACGACTTCTGGGCGGAGATCGCTGATGCTGTTGAAAAAATTGAGATGTTTTATGAAGACACCACT TTTCCAGAAAGAGAACTAGCTGCACTGGTTGCATCGAAGGTTTACTATCATTTAGGAGCCTTTGAGGAAT CACTGACGTACGCTCTAGGAGCAGGGAAGCTGTTTGACGTGAATTCATCCTCCGAATATGTAGACACCAC AATATCCAAATGCATCGACCATTACACCAAGCTGCGAGTGCACAACTTGGAGCACGTGGACGACCCTAAA GACATTGACCCGCGTCTGGAGAACGTCGTGGACAGGATGTTCCAGCGTTGCTATGACGACATGGAGTTCA AGCAGGTGGTCGGGATCGCGTTGGAGACGCGGCGGATCGACTCCTTTGAGAAGGCCATCATGAAAGCGGA TGATGTTGGCGGTATGCTCAGTTACAGTCTGAAAGTCGTCTTGGCGCTCCTCCAACAAAGACAGTTCAGA AATGAGGTTTTACGCATTCTCCTGCGTCTGTACATGAACCTGGCAGTACCAGACTACATCAACGTCTGCC AGTGCCTCATCTTTCTTGACGATGCCCAAGCTGTCGCAGACATCCTCAGCAAACTCCTCAAGGAGAGTCA AGACCAGACTTTGATGGCCTACCAGATTGGGTTTGACTTGTACGCTAGCGCCACTCAGCAGTTCTTGGCC AGGGTTCAGGGCTCACTTCGCTCCTCTGGTCCCGTCTCTGACACAACGAGTAAGACAGAAACAGAGACCA AAGATGGGGAAGAAATGGAGACGGATGATACAAAACCAGAAACAAATGGCACAGCTGATGAAGGCACATC TGTGGATGGCCCTGCACCTGTTCATAAGGAGGAAGACAAGGTGTACGCAGATCGGCTGAGCAAGCTGATG GAGATTCTCAGTGGCAGCATTACCATAGGCATCCATCTACAGTTCTTGATACGCAGCAACAAAACAGACC TACAAATCCTGAAAAACACAAAGGATATTGTGAGGAATTCAGTATGTCACAACGCTACCGTCATTGCCAA CTCCTTCATGCACTGTGGCACCACGTGCGATTCTTTCTTGCGAGATAATCTGGACTGGTTATCCCGGGCC ACCAACTGGGCCAAGTTTACGGCCACGGCCAGTCTAGGGGTCATCCACCGCGGCCACGAGAAGGAAGCCC TAAGCCTGATGTCCACCTACCTGCCTAAAGACACGGGGCCTGGCAGTGCTTACCAGGAAGGGGGCGGTCT GTACGCGCTGGGGCTGATCCATGCTAACCACGGCGCTAACATCATTGAGTATCTGCTGGGGCAACTCAAA GAGGCAACAACAGATATGGTACGGCATGGTGGCTCTCTGGGCCTAGGCCTGGCCGCAATGGGCACAGCAA GGCAAGATGTGTACGAACAGCTGAAGTTTAATCTTACGAGGATGATGCCGTCACAGGTGAGGCTGCTGGT TAGCTATGGGCCTGGTCATGATTGGCTCCAAGTCAGCATCAGCCATTGAAGATATGGTCAGCTATGCACA AGACACTCAACATGAGAAGATCCTACGTGGTCTCTGTCTCGGTATTGCCCTGACAATGTACGGCCGACTA GAAGAAGCCGACACCCTAATAGAGAGTCTGTCTCGCGACAAGGACCCAATCCTGCGACGTTCCGGCATGT ACACCATCGCGCTGGCGTACTGCGGCACGGGCAACAACCAGGCCATCCGCAGGCTCCTTCATTTCGCTGT CAGCGACGTTGACGATGACGTGCGACGGGCGGCCGTCACTTCGCTGGGATTCATCTTGTTCAGGACTCCA GAGCAGGTCCCCAGCGTCGTGTCCCTCCTGTCGGAGAGCTACAACCCCCACGTCCGGTACGGGGCTGCCA TGGCGCTAGGAATCTCATGTGCCGGGACAGGAAATAAGGAGGTTTTGAGTCTCTTGGAGCCGATGATCAG CGATTCGGTCACCTACGTCCGACAAGGCGCACTGATCGCCTCAGCTATGGTGCTCATCCAACACAATGAG AACACCTGCCCCAAGGTGACCACATTCCGTAATTTATATACCAAGACTATCGGCGACAAACACGAAGACG TTATGGCCAAGTTTGGAGCCATCCTAGCCCAGGGTATAATTGATGCAGGTGGGCGTAACATGACCATCAG TATGCAGTCTGCCTCAGGCCACACCCACATGTCCTCCGTCGTGGGCGTGCTGGTCTTCATTCATTTCTGG TACTGGTTCCCCCTGGCCCATTTCCTGTCTCTCTCCTTCACCCCGGCTGCGGTCGTCGGACTCAACGCGG ACTTGAAGATGCCAGTCCTGCAGATCCGTTCCAATGCCAAGCCGTCTATGTATGCGTACACACCCCCTCT GGAAACGCCCAAGGAAAAGGAGAAGGAAAAAGTGGCCACCGCTGTCCTGTCCATCACGGCAAAGGCCAAG AAACGGGAACGAAAGGAAGCCGAATCCAAAATGGAAGTGGATGAGCCAATCAAAGAAGAAGAAAAAGATA CAGACAAGGACAAGAAGGAAAAGGAAAACAAGAAGGAGAAAAAGGAATCCAAAGAAATCGAGAAAGACTC CAAGGATAAAACCGAAGAGACGATCGACGAGCAAGGAAGGGGAAACTGAGGAGAAGAAAGAAAAGAAAGT GGAACCCCCCTTCGAGATTCTCGCCTCGCCGGCGAGAATCATGGTCCCTCAGCTCAAGGTGTTGTCCACA GTAGAGGGCGCCAGATATGTGCCTGTCAAACAGCTCTCTGACGGTGGCATCATTATGATGAAGGACACGG CAAAACGATGAACCCGAGGAAATTGTACTCAATGTCCCAGCTGGAGGACCCAAGATGGAGGAAGAAGAGG AAGAGCCTGAACCTCCTGAGCCGTTTGAGTACATTGAGGATTAAGATGGGCTAAGAAGGGGATTTGAATG GGATTAAGGATCAGATTAAGTCTACATTTGTTTCAAGATTAACTTGAGCTGGAGGACCCAAGATGATGCA GAGAGACGGGACCTGAATCTCTTGAGCCATTTGAGCACATTGGGGATTAAGGGATTTCAATGAGATTAAC GATTAGATTAAGAATGCATTCATTTCAAGGTTAAAGCTGGAGGACTCAAGAGGAAGAAGAGAGCCGGATC TTCCTGAGCCATTTAAACACATCAAGAATTGGATTATAATGGGATTAAAAATGGGATTTAAGATCAGATT AAGACTGTATTCATTTCAAGGTTATCTCAAGCTGGAAGACTAAAGATGGAGTATAAGAAGAGGAGGAATC CTTATCCTACCATCCTGAGCTGTTTGAGCACATCAAGGATTAAGAATGGGATTATGTTGGGATTAAGGAT CAGCTTATGACTGCATTAATTTCAGTGCTACCTGGCTACTGGATTAGCCCCTAGGCCCTCTGGCTAGGAT GCAACCTCAATCCTGCAAAATCCTCCAATTGCCACCAAGAAAAGATTGGATTCAGCCTCAATCCTCCAAA ATCATCCGTTATTTCTTGAATTCAGTCTGTGGAGGGTGACCACTGCCTCAATCCTCCAAAATCCTCTGCC AATTACTGCTGTGGTTTGAGGCACTGCAAATGGCGTTTAGAAGCAGTGCGGATGAAATACGAGAAAAACA CAGGGCTGATTTATGCATGGCTGAACATAACCAATGCAGGATATGGCCTACTGGCTTGACGTAATGCATC CTCCACAAAAAAGCAATAATCTTTGCCATTCATCCTCAATCCTCTAAAATCATCCAAAACCAGCAGGGGG ATTTTGGAGGATTGAGGAGGGTTAGGGTTTAGTAACATTATACAAGCGAATACTAAGCAAAACTAACAGC ACTTTTTCCCCTACAAACACATAAAAATTGGCCATTTATTAAACATCGGAAACAGCTGCAATATTAAAGG CGTGTTTTTCACTTCCCAAAGTCGTTCTCTTTAATTCCTCCAACCATCCTTCCCCCCATTGTTCTGAAAG TTATCACACATTTTTTTTTAATAGTTTCTGCAATTTGTCAGGGTAAGCTTGAATC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds