Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038192658.1 PREDICTED: Patiria miniata cAMP-dependent protein kinase catalytic subunit alpha-like (LOC119722501), mRNA TGTGATGCATGATATGGAATCTAGCTGTCGGCTGATGATGTTTTGCAGCGTAGTGTGCGGTTACCCAAGT GTGCGGTCGATATTGTAACTCCGAAATTTGATGGAATTATAAGCAACGTTGTCTGCCCTCGAAACGGTGA CCGTATTCTGTGGATTTCCCCACCATTTTCTGCGGAAGGACCTGTCTTCCAGCGACCAAAAATGGGGAAC ACACCAACTTCAAAACCGGGGCCGAATCAGGACATAAGTGTGAAAAACTTCCTAGCGCAAGCAAAAGAGG AATGTCAGAAGAAATGGGACACCCCTACACAAAACACAGCATGTCTAGACGACTTTGAGCGATTAAAAAC CTTAGGAACTGGCTCCTTTGGCAGAGTCATGCTGGTCAAGCACAAAGCCACCGGTAATTTTTTTGCAATG AAGATCCTCGACAAACAAAAGGTTGTGAAGTTGAAGCAAGTAGAACACACGCTGAACGAGAAGAAGATCT TACAATCCATCAGCTTCCCCTTCCTTGTTAGCTTAGAGTTTCACTTCAAGGACAACTCCAACTTGTACAT GGTGCTGGAGTTTATACCCGGAGGAGAGATGTTCTCACACTTACGGCGAATCGGGCGGTTCAGTGAACCC CATGCAAGATTCTATGCAGCGCAAATAGTCCTTGCGTTTGAGTACCTACACTACCTGGACGTCATCTACA GGGATCTCAAACCAGAGAACATACTCATCGACAAAACGGGCTACATCTCGGTAACAGATTTTGGTTTTGC CAAGAGGGTGAAGGGCCGTACGTGGACGTTGTGCGGGACGCCGGAATATCTCGCCCCAGAAATCATCCTC AGCAAGGGATATAACAAGGCTGTTGATTGGTGGGCCATGGGTGTCTTAATCTACGAGATGGCGGCCGGTT ATCCGCCATTCTTTGCCGACCAGCCTATTCAGATCTACGAGAAAATCGTCTCAGGGAAAGTCCGGTTCCC ATCGCACTTCAGCGCTGACCTGAAGGAACTGCTGCGCAACCTACTCCAAGTGGACCTCACCAAACGCTAT GGTAACCTCAAGAACGGCATCGCGGACATCAAAGGAGCGAGGTGGTTTGGAAGCACGGACTGGATCGCAA TTTATCAGAAGAAGGTCGAAGCGCCCTTCGTACCCAAAGTCAAAAGCGCCAGCGATCCCAGCAACTTTGA CGACTACGAAGAAGAGGTCCTTCGCATCTCCTCCTCAGAAAAATGTGCCAAGGAATTTGCCGATTTCTAA CCAGGACTCCTTCCCCTATAGAACCCCTCCTTGTTCCTCCCCAAAAGAGACCCCTCGCCCCTACACCTCC CAGTCAAAAATCCAACCACACCGCACTCAATTGATACAACACATATGCTGGCTTTTGTTCCCAAGTCAAT TTGCGGAGATAAAACGAAGTCCAGTCCAGAACTGATCAAGTATCAAGTGCGAGATCAAGAACCAAACGCT TGACGAGTCTACATGTATACGTACCAGAATAATCGGCCACAGTCCGTTTTACAAGGACACACATGAAGCT ATTCTCGAAGACAAGTCCGACTCGAAAACAGCTACCCCAATCCACCGTCTCGAAATCAACTGGTTGAATT CTTTCCATCTGGCAAAAATAGCAGAGGCGATGATGGATTTGTTCCCGTCTTGTAGAGGACAAGCACAGGA GAAGGTGGTTTTTAAGGCCGTTTTTCAGGTATGTGTTAGAAGTAGTCCACACATTTTTTTGGAAATTGGG AAACCAAATTTTATTTGGGTTGATTTTGAGTCGCTCCAAGTACATGCATGACTTGGCAGGCCATTTTGAA AACGGGTGTGTCTCGCCGATAACATTTATAATTTCCTTGATGGGGGGAAGGGTGTTCAAGCATTGGATGA CATTAGTATGTAAATAGTCTTGAATATTAACTTGTGTTCTCAGCAAAACAAAGCATTTCAAGTCAGTTTT CCAATCCACGTATTACAGAATTTTGTTTCGATTTGAAAGGCTCTGACAATTTTTGTGGGGGTTTTCCGCC CACTTTTTATCCGCAAAAAATTTGGAAATTTAGAGTATACTGCCTTCCTCTTACGAGATAAAAAAAAAGA AAGAAAACAAATATATATAAGAGAGAGAATTGTATATAGGTCTGCCTGCCATGTTTCATGATGTTTGTCG AGTTTAATGCGAGTAAAAGATTATGTTCTCATTAGCTGTTTACTACTGTTGGTTATTTGTTGTTCAAACA GTTGACAAAAAAATATTGTAATTATATATTCTCACTTTTAAAAAATGAGAAATCGCGTTGTTGGGATCGG GTGAATTATACATGGACGTTACACAGTAGTGTGTGTATATTGATTTAAATTTTTTTTTTTAGTGTGATTT TTTACATGTATGATGTTTTATTATGGTGCAATATGATCACATTGTGCCGTAAGCAGTATGTGTCTGTTCG TAAAAGTATCTCCAGCGAATGTTGAGATGAGGAATGCTTCACTTTTTTTCCGTTCTTGCTTCTGGACAGA TTTTCACGTCCTTTCTTTAGATGGGGATCGGCAATTGCCCTCGCATGAAAACAAAACAATTCAAAACCAA ATTTGAATTTTTTCATTGTGCGGTCGAAACCCATTTATAGAACTCTTGAGATCCTTTTCATAACTGGCCA CAAGAGGGCGTACTTTCCTTAATTAGTAGCGGGACCATTCTTTAGAAAACCTCTTTAAGAACATTCAAAT GTACCTCATGTACATTACTCAGACTTTATTTAATGACGAAACTTTTTTTTGTAATAATAAATATTTGAAA TATTTGTTGAATTTGGCTAAACAAAAAAATAGACAATCGTATTGTTCTTTGTTCTAGTGCAGATTGATAG AGATTATTGTGTGGTAAACTAGGACCATTCGAATCTGCATGTAGTCCCTAAATTTGGGCAAATCTTGAAC ACGCATGCCTGTACTCATCCAATGAAAAATCCCGATAAGACAGTTAAAATAAAACCAGAAAATGCAAAAC AGCCAATGTTTTGAACATTTTTACTAAATTTATTTAGCCACAAACCCACCAAAAATTGACACCTCTTCAT AACATGGTGCCAGGCCTAGTCCTAAAATACATTGGTTTGTAAAAAAAAATTGGGTTGTAAAATTAATTTT TGTTTGTTTGTATGTAAACAGAAATTTGTTTGTATAGATGCTGTTCATTTTGAAGGGCCATGTGAATATA AAAACCTGTTTCTCTCTCTCTACCTTGCAGTATATTCGCTGGCAACCGTTTATTTCTGGGAAGAAAAGTT AGAGAAAAACAATCATCAATCTGTTTTTCTTTATTGTACCATAATTCAGAAAGTTAAGTTGTTGAATATT TTTCCGTTCACCAGTTTCATGGAAACAGATTTTTTTTCCCCCTGAAATTTTGGATGTGACTAACGATTTA AAAGATCAGTATCTAGATCTTTGTTTGCAAACAAATTTTTCATTTTTAAGCCCCATGACATTTCTCAGCA TTTTTGAGGAGTTGTAATTTCTCTGTCCAAAGTATGGAAAGAGTGAATTATTTTAAATTTCTTGGGGGGG GGGGGCATAGCAAAGTCATGAAAAATCAACCTATTTTGAAAATACAAAGCACAAAATGTTTATTGTAAGT ATTCATAGTTCAAAAATTGTACCCCACCACTTACTTTTAGCCTTCTTGACCCTATTGCTCAACCCTTCAA AATCCAACTGAATGTTTTGTTGGAATTTGTGGGAGCGAGTACTGCACTAGTAAACTGATTATGCTTTACA TGGGGTCAGGCATACCACCATAATCAAGAGTCCAACAGTTTGGGTGTTGAGTTTACCATGGTGTTGGATT TTGCAAGAGTGAGGAAGGCTCCTAGTAAATTACTCAAGGGGTTAGGTTAATTTTTGTAAAATGGTGATGG TCCATCTGGAAATAATCGGATGAAAGAAGGAAGTAAGTGTAGCAAAACCTTTCACAGAATTGTTGATATT ATATTGTGGGACTGTGAAGATGCTGCAAGTATTATGACGCATTTTGTTTCTCTCAAAAACCGTGTCTTTC TGCCCATGTTGTATGGGTCATTCGGTAAATCTGGGGCCCACTTTTTCCCTGTCCCTGTTACATCTGACAT CTATGATTGTATAATTCTGATGCACTCCCTAATGCAGTCGTCCTCCAAGAGTGATTATGAATAGCAAACT ACCTACCCAACAAAAACAAAATGGTATGAAATCATTCTTAATGATACTTGAATGACAAATTACAAACTAC CAAGGTAACAGGGACAGGAAAATTGTCACACCTTGGATCCCAAATTTATAGACTGAACACAGACATCTTA AACACGAAAGTTATATCTCACCAAGGCTTCATTAAGGGTTCCCTTAGCGATCGTTGATTTTTAGAATTTT GTTCCCACTTTATCCCAGTGAAATTCAACATTATTTAAGTGGTCTTCTGTTAAACGCTTCATTTTAGAAG TGGGGGTAATATTTTGTATTCCCATGTCCCAACCCTAACACCCGTGTCATTTACTTCCTGTGAGTTTGTA AATTTACTGAATTTTTCCCAAGGGATTTTAAAGCTAAACCAGGCCCTCAAAACTTAATTATGCATTAATT ATTTTTTAGCCCCCTCTTTCATTTTTGTTTGGGTCTAGAACTGTGAAACCCATTGGCTAATGTGAATGCA TAATTCCATGTTCTGAATGTGACAGGTGGTCAGATACTCAAATGAATACGATGAATAATTTTTGATCAGA TTTCTGTACTTGAGGAACTGGGTTCAATTAGCATTTATTCAGATTTAGAAGTGGTTTAACATACACTTCT GATATTGTCAAGGTTTTAAAGTTGAATTCAGGAGGGGCATTTTTAAAAAAAAATTGTGACATTTGGGGCA AGTTGATGTGATGTAAATAATTTTGGAATTCAGTCGTGTTGGTTGTCATAAGATTGTTGAATTGATTAAA AAATAAACTGCTGTTTCCTTGGGGCACTGATTTTTCTAACCATTTGGAAAAAAGTCCCAAAACTAAAGAA GAAATGCTTGTAACAAAAAAGTTATATACAAAAATATTCAAAAATCAGAGAAAACAGCGTGTTATCTATT TCATTTGTAAATTTATAAATGTAGAAAAAACAAAAACCATTGGACTTGAACTGTGTACCATGAATTCATG TGTAGCTGGTATTAAAAAGTCTGCTTGTTCATTGATATTGTAAGATAAAAACAAAACAAATTCAGAGTTC TCTGGAAGATGAGTATATCTGTTGGGTTTTTATTATTGAATGTTGCATCAAATTTCTGAAAGTTGCCTGC AGATGAAAAAACCCTGTACGTGTATGTAAAACCTCATGTAGCTCTGTAATATTCGACGAAAAAAAAGGTC GCTTTTGTAGAGTAGATGTAGTCAATTTTCGTAATTGTATTGAGAGTTCCTTTTACCCAGTTTCTATTGA GTTGTGTTTTTGTGCCAGTGGTTTCGAGATGTCCTAGAAGGATCTTTCATAAATTTTGGCAGGATGCCTT GCTTTTTCAAACCGGTATAAAGCAGCATGGGCCTTCCCTTTTAGAGTGAACATGGCAGTTTTTCTTTATA ATCAAAGGGAAAACGACATGGACGTGGTCTCGCAGTTTAAGTTAGGTTGCAAAAACTGAACTCGGCCCAG CTCCCTCTGTACATGTACCTATTGTTAACACCTGTTTTCAATCAATTATCCTGTTGAAATGTACAGTGCA TTTTGCAATTTTCCAAGTATTGCTGGCATGTATTTCAACCAAGACCACTGCTCCAAGTATTGCCCGTTTG GTTTTTATATTCGACCAGAGAGGATGCTGTTAAATTCTCGCTGATGACATCAACTTCAACTTGTTCGTAA GTCAGTCTGGTAGATTGCCCATTTACAGTGTAGTGCTGCAAGTTTTGTGTTCAGAAATGGATGCCTTTTT AATATTTGAGGATCCAAAGATGTTAAATAAAAGTCTATGACTAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds