Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAWB01061976.1 TSA: Patiria miniata AMR9002.39176.0.5 transcribed RNA sequence TGCGCATGTGCGGTGAGTGACGAAAGAACACAACAATGGCGGCCAACAGAGAAGAAATACTGGCAGATTT TCAGGCATGTACTGGAATTGAGAATTTTGAGGAGTCTTTGGCCCATTTGGAGCAGAATGAATGGGATTTA CAGCGAGCAGTGGTGTCCGTCATGGGGGCACAGGAGGGTGTAACGGTCCCTGACTCGGCCCCTGAGGAGG CACCCCTACCACCCACCTTGCCGGGAGTTGTACAGTTCAGTGGATCCGCACCGTGTGCGTCCGTCCCCAG AGCGTTTGAGTCTCACCGATCCAACAGTCCTCCGCCAAACAGAGTCCGCATGCTGGAGTTTGATATATCC TACAACGACACAAACACGGAGCTGGTCGTGGAAGACAGCAGAACAGTTCGTACGGTGAAGGAGCTGTTGT CAGCTCAGCTCAATGTCCCACCAGAGAAGATGCTTGTAGGAGGATGGGCGCATGCTAGGCCGGCACCCGA TGACTCGGATGTGTTGTCGACGCTACATTTACCTCTCAAGAACAGACTGTACGTTCTCACTCCTGGCTTA CCCACGACCAGCGCCGAGCAGCCCAATGGAGAAGAGACGAGTTACACAGACAAGTTGACGCGGTCTTTCG AGCTCATTATCAACGACACCGACATGAACCAGGAGTACAGACTACGCTACGAGGGTTGTAAGACCATTCT GAGCGTCAAGCAGGGTATGAACGCGCTAACCAACGTCGAGGTCCGACACCAACGATGGATAGGGTGGCCC GACGAGAGCGATGATTCGCTAACATTAGCAGCCTCAGGAATAGACTTTCCCAGTCACAAGTTTACGTTTT CTAGGGTACCGAACCACAACAAAACAGACCAGCCCTCTGCATCACGCGACCCCATCAACATCAGCGACAG CGAGGATGAGGTGGCGGACATGGACATTGACGATTGCACGATCTTCAGTAACGAGAGCCAGACGAGAAAG TTTGAACCGTTATTACCAGCCGATATAGAAAACGAAACGGACGGCCTCATTCAGTTCTGTCATGAGTTCA GCTCCCGATACGGGGAGACCCACCCTCAATTTTACATGGGTCCTTTAGAAGATGCCGTGAAGGAAGCATT CGGTGGTTTGGCAGTTGAGAGGAAACTACTAGCGATCTACATCCACAGCGACAAGAGTGTCCAAAGCAAC GTCTTCTGCAGCCAGCTGCTGTGTTCGGAGAGCATCGTCAATTTCCTGACGCAGAACTTTGTCACGTGGG CGTGGGACGTCACGGCGGAAGAAAACAAAGAAAGACTTCTAAGCACTTGTACAAAGATGTTTGGCAGCGT CACCACGGCGACGGTCCGCAACGTAAACCAAGACAAATTCCCCTTGCTGTTGATTGTCATGAGAATACGG TCAAACACTGAGGTCTTCTCCATACTACAAGGCAATACAAGTTTGGATGAGATGATGACGAGTTTGATCC ACGCTGTTGACATGTTCACAGAGCAACAGAAGTCCGAGATTGAACAAGAGAATGACCGGAGGGAGGCAGA GCAGCTGAAGCAAGAGCAAGATGCAGCGTACCAGGCATCGCTGATGGCTGATAGAGCAAAGGAACAAGAG AGGTTAAAACAGGAACGAGAGGAACAGAGACAACGGGAACAAGAAGAGCTAGAAATCAGAGAAAGAGAAG CCGAACAAAAGGCATTGCTACAATCTCTGGAGCAACAACTCCCGGACGAGCCCAGCGAGAGTTGCCCCGA GCCCACCACGACGCTAAGAATGCGCGTACCCGGTGGGGATGTGCTGACGAGACGATTCCTGGCCGAGCAG CCAATCAGAATGGTCATGGTGTACTTGGGTACCAAGGGCTACCACACCGAAGACTTCAAAGTGCTGACCA CCTTCCCAAAGAAAGACTTGACATCTCTAGACACTTCGCAATCCTTCAAGCAACTTGGTCTCTGTCCGCA ACAAACTCTGTTTATAGAGGAACGCTAGCAGCAAATGCCATCTGCACCCATCGCATGTGCTCGCCCTAAA ACAAGCTACCCTAAATTACCTCAACCAATCAACGCCCACCCATAAAAACTAAGTAGGGACCTGTCTAAGT CCATGCTGTTTGTTTGTCCACCCAGGAGAGGCAGGGTACCAGACACTCATAATTATCCAATCAGAATTCA GCCTGGCATGTAAAAGGTATTACTTTTCGCCTGAAGTTACAAATATGTAGAAGAATTTGTGTGTCCGCTC TTAGAAGTTAGTAATTTTGTTTCTGGACAAAATGCTACTTTGAGTTCTTCACTCTGCACAGATTCAAATG GTGCATGTACTTACTGCAGAGCACTCTGATCAAACTCTCGCAGATTTTAATTGGCGCGCTCTGCGTGCAA CTTTTGACCGGCGCGGCATGCAGTTGCAGGTGGCAGTTTTGAATATCCAAATATTTGGTCAAAAGCAGTT CATTCGACAATGGACTGCCCTATTTCATAATGGATCATTCCATTCAGCCCCGCCCGTGGTCTTTCGACCA ATCAGAGCCTTGGCTGAGGTCCAACATGCATGCACAAAAGTCCAACATGCGCGTGCACATGGACATGATG CGTGCAGCTGGAACATAAAAGTGCTGCAAGGGAGACTAACATCTGTTCTTTCCCACGTGCACAGTGGACA GAGCCTAACAGATCATACTATCGCAGCATTTTATTTATGACAAGTGAAGCAGCAAAAACAAAAATTCCTA AAACGCTTGGATTTCTTGAAGGCTTTTTCCAAATGAAATCTTTTGAGCTTGGAACTTGCTCTCTGAAGTC AAGTTACCAACGCAACAGCTGGTCTATGAGGACTCCGACACACCAACGGTAATGTACAGGAGAAACATGA AATGCACTTAAAAATATAGTCATTTTGAATTGGGTATGAATATGAAATAAGTTAGAATCTCTTCATTCCA TTTCATGTTTGATTAATTCTCCATTAACAATTAGGGCATAACAACCACACATGATTAACATACGTTTCCC TCCTCACATATTTATGTTTTCCCTTATGTACAATGATTTTGGATTCAGGCATCAACTAAAATGAACCTCC GTGGGTGTTAGGAGAGTGAGTCTGTGACCTCTTGTCCAATCAGAGCATTCCTACTTTAGTATAAAAAAAG TATTTCAGTGGTTCAACCAATAGGAAGTGGCTTTACATGCTTGCATAACGCATGATCCACAATGCGCACA ATGTGCAAACACAAAATGCTAGAATTGTGCTCAATAATTTAGTCCTAACGCTGTGATTTGGTTTAACTTT AATTTGTGCCTTTCCAGGCGAGGATAACGTTTTACACCAAAGGGCATTCAAAACTTGTACCTTTTCATTT GCAAGTATTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds