Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038191452.1 PREDICTED: Patiria miniata trophoblast glycoprotein-like (LOC119721389), mRNA TGCACTATACACAATGTACAACGTACACACACCGCAATATATCGCATGGGATCTTTGCGTCGAGCCGATT CGATCGTACAGAAACTTTCGGAATTCCAAGACATTTGCCATCGCTTTTCAACACTTTACAAACTTGAAGG TTTGATTAGCGAATGGCGACTACTGTAGACAGCTGTGAAGTTGAGAAGCCAACTGGAAAACGCGACGCAT GTCAATTCCTTCCATCATAGTGGCCTTTAAAAACCCACATAGGGTGTGAACAATCCTGCATTTTGCCAGA GACCAAGTCGACAGGAGCTTCGCACTTCACCAGGAATTATTTAGTGCGGGATCTCCGAGAGCCAAAAGCC AGATATTCCCCGAACATCATGGCTTGTCAGTACACATCTTTTATCTTTTCCCTTGTTGTTACGCTTTCCC TGTTGGCCGGCGCAGTCCAGGCTGAAACTTGTCGATTGCCAACTAGGCCGAGGAAATGCAGCTGCTCGGG GACTGCACTGAAATGCAATAGGTGGCCGACGTGGGAAAAAGTCGCACAAAACACAACTTCCCTGACGATA TCAGGAGAGACCACTGTGACGGAGCTGACAACAGACAATAAACCGAGCAAGGCCCTCCCACATCTGACAG CATTGATTCTGACTGGCAACAATATCAGCTACATTGAGGAAGGATGGTTTTCCCAAACTGTTTTTGCAGC CCTGGAGGAGATTATACTAGACCAGAACAAACTTACCCCCAATGACACGCAGAGAATGTTCGCCGATGTT TCCACCAACCTCCGCCTGTTGAGTCTCACCAAAGCGTTCCTGAATGTGACTCCAGATGACTATGTGCACA ATTTGACAAATATCTTCACTGATGTGCATTTAACAAAACTGAGAGAATTGAGATTGGACGGAAACAACAT TGGCTTCCTCTCCCCATTCGTCCAGGAGTCCAGCGTGTTGACGTTTCAGGAGCTTCAAAGGTTCACTCTG CACAAGAGCAGTTTACTTGCCATCAGAAGCGGCACTTTCCAGCAAAAAGTATTCCCGAAACTGCAATACT TAGATTTGAGCAACAACGAGCTAGTCAACATTGACAAATCCGTCGTTGAGTTGGACTTTGAGAGCTTCTC CAACGTACAGCAAGACCTCACCATCGATCTCAGCGGCAACCCCTTCTACTGCAACTGCCGGCTTGCAGAC TTCCAGGCCTGGTTAAATGCCACGAACCTGGTGTTGGACAAGGAGAATGTGACGTGCGGGGATGCGGTGG ATGAGTCCGAGCGTCACAAGCCTGTGCTGGGGTCTAGCTTGCCGTGCGGGCCCAAGCCGGAGGAGATAGA CATTGACAACGAGCTCCGGCCGTCCTATATCATCCTCAGCGTCATCCTGGCCCTGGTTGGTGTCTTGGCC CTGATTGTGCTGTACATGCGCCGCAACGACATCAAGGACTACTTCGTGGACCTCTACACCACCACGAAAG AGGCTTTCAACAGCCGTCAGGGCTACGATGACATCAACAGGGTTCGGCGTGACACACCAGAGATGGCACC CACAGAAGTTTGATCAAGATGCAGACATTTGGGTACCGAGTTAGGCGACCGGTACTGTTCAAGTCAAGGC AAAATCTATGCAGAGGATTGTACATAGTGCATACATGTACGTGTACAAATGTAACTGATCTACATGAATG TGGAGGCAGCACGGAACATTTATTGACATTTCAGAACTGAAGAGAGGCTTCAATGCATAAAATATCCTTT TTTTAAATTATTTATTTGTTTGTCTATTCATTTTTTAATAGATTTTCTGCCGGACCAGAAAATGTACTTG TAATGCCCTTTTTTACAATTTTAAGCTTTTAATATCTTTTATCCTTGTGAATTTTTGGCAAAGGGTGAAG AATGCACTAGCCGTAATTTTAAAGAGGTTACTTAAAAAACAAAAGGACCCTAGTTTGAGACAGTTGCGAT AACCGGTGTCCCAATTTCCAGACACACAATGGGGTTAGGTTAAGACACGAGCTGCATTCATCACTGTGTG ACAGCATCCATTTTGTGTCCAGAAGTGGGGACATGGCTTTCACCCCTGATTTGTGCAGCTGTGAAGTCGA ATGACACTGCATAATACTGCATGTACATGTACCTGTATCTAAGTGTATCTGGCTGTTTGTCAAGAAAGTG TGTCCCATATTAACGATTGTCGAAAAGACAATGATTTAATAGATTTTATTACAATTTCTGCGTCTCAGTG GTGGATCCTGGGGTACAGAAGGGGGGCTCCCAACGACCGAACTTTACTTAAATAAGGCAATTACGCCTCT CCCCCCCCCCCAAAAAAAGAAGATGTGGAAAATACATACAATAGTAAGAATACAATCTGTTTTGATGTAT GCATCTTTTTTTTGTAAGTCTTACGATCTTTTTTGTTTTACGATGGATGGCTTTTGTTAAATTCTGTAAA TAGTGTTTTTTTTTAAACATCTGTGTATTTAAAACAAATAGGTATGGAGAGTAAGACGTGCATAGAGATA TTGCAGTTGGGCATTTATGAGGGAAGATACAATGTACCGGAAGATGCTGGATATTAGTAAGATCGGAACT GCTGTTCCAAACTCTAGGATTTAAGTACGTAAAACAGTGGATGATGTAACAGAGAAGTTCACAAGTGACA AGTTGTGGGTCAATAAACTTCTGATTCTCGCCCTGTGATCGGTCAGTCTGTGGCGACGGCAGCTGCCCAT TTGAATTGATGTCAGCAGTCGATGTGAAGTTCTCAAGTGGGGGACATTTCATCCCGTCATCCATCTCAAA TGCCAGTGTCCGACAACTTGTGTATTCACGAGGTGATCTTGTGTGCCGCCCGTGCTTTTAAGCCACAAAT CAATCCACATTCTAGCATCCTTCTGCATGCTGGAGATTTGATCAGCTTGCATGTTATGCATGCGTACGCT GTTTACAAAGCAACTTGATCATCCCCAGTCCGGGAAGCATCTCTCGCTAGGGGTTCACTAACACTCTCCG TTTTGAGTTCCATCGATACCCAAAGGTTTTGTTTTTCGCAGTGATGTGCATCTTAATGACATGGATACAA AAAGTACATGTAGGAGTTTTGTGGAAGGTGGACACGTCCCTGACACATATTGCCAGTGTACAGTTTGGAC ATGTAACCGGTAGAGTTGTGGCCGTTGAAAAATCTTTCGTTTTCACTGTTTTGTATTCAAGCACGCCAAT GTTTCGCTTCAAGAATAATGGTAATGCTAGAAAAGATCACAAGCACCTAAGGAATTTACAATTAAGAATG CTTGTTAAAATTTGAAGATTTTTAAAAATATGCAATAATGTATTTATAGCTTTTCACATCTAATTTACAA TAAACATGTATTGGTCTATATTCATGGGAGATGTACAGTAAATATTGTATTCTTACACTTCATAATGTTT ATGCTACTTTGAACTAAAGATGGTCATGTGTGGAGTCTATGAAGTTTGGCAGGGGACAAATTCTCCTCTT GTACCTAATTACAATGTATATTGCTGATTTACCCCTAACCCCCTAGGCCGTTCTGGCTCGGAACCATCAT CAATCCAGCAAAATCCTCCAATTGCTATCATTTAAATTTTGGATTCGGCCTCAATCCTCCAAAATTATCC GTAATTATTTCTTGAAGTTGTTCAGTGGAGGAGTGACCAATGCCTCAATCCTTCAAAATCCCCCAACAAT CACTGTTAATGGGTTGAGGCAGTGCCGATGACATTCAGAAGCAGTGCGGATGATATCGAGCATGATGCAG GGCTCAATGTATGATTGAACGCAAACAATGCTGGGTACAGCCTACGAACTCAACACAATGCAGCGGCCAA AATCAAGAGACACTTTTTTTGCCATTCAGCCTCAATCTTCCAAAATCCCCCAAAACCGCCTGGAGGATTG AGGAGGATCAAGGAGGGTTCGGGTTAAAGGTTCTTACCATAGAAAGCCAAATGAGGATATTAATTTTCAA AGCATTGTAGGGAACGGTTAAGAGTTTTGTGACACTTGCTGATAACAAAAGTAAAGAAGCACTTGCCTTT TTGTGATGAGGTTGGTTTTATTTTTGTATGGATAACTTTTTCTTGTACATACTTTTACAATCTACTTAGG AACCTAATCACTTCATGTACACTGTAGTAATTAGAATGCATACACGTGTGTATTTTGCTTTTTGGTTGGC TTGTATTTTTATATTCAACTTACTACTGTATTCTTGATTATGCATTGATGTTGAAGTATTATTTGGCTTT TGTTCTTTTATATAAGTTTTACCTTTTGAGCATAGTAAAGTTATGTACATAATTTTTGTATGAACTGTTA AGTATTTATTTATATACTCAGTAGGCTGAAAGTGGTAGGACAAAAATTAAGAAATTACACGGGATCATGA AGAAATCAATTTTGCCTTTTCAAAAGAAAATCTGTTTTCTTCTGCATGACGTTCTGTCATCAAAACGTTG AGGCTTCGGCATGAGATCATGTTAAAAGTTCACCCTGATGTACATGTAGGTCGATGATCGTGTTGCCGTG GTTTTTCATTGGTAAATATTTTCCAGTTCAGTTGGGTAGAATATTTTTTTTTCTTTTTGTGTGAATACAG TCGACTCTCGTTAATACAAACTCTATTAATACAAAATTCTGGTTATAACGAACATAAAGCCTTGGTCCCG ACTGTGCATTTATATGCACAATGAATGGGACTGATGTTCCTCTTAATACAAAATTCTGATATAACAAACA ATTTGGCTAGGTCCGAACGAATTTGTTATAACGAGACTCGACTGTATTGTTTTTCCTTTTTGTGTGGACG GCTTAATTACAAGATTAAAAAAGGGAAAAGAAATGGGAGAATAGAGCTCTGTTAGAGGGATTCAGTCATT TTGTACCTTTAAAAGATTTAAGTCATATTCAAAAGCGAGCCACTTGGAACAAATTGTAAATACAAATGTG TGATTGCTTTTTTTTTAAACCAAGTAATTTTTACCTGCTTGTAAAAGGCAGTATGCTAACTACTTACTTA TACATGTAATTTCTTGGGAGAAAGAGGCATTGAATTTGAGTAGTGATTTTAGGTCTGCTCTTCGACTCTG TTCTGGAAATCTTGAATGTTCCTAAATTATGATTAAATGAACTATATTCACATCCATCAAAAGTCATTTT TGACTGCACTGTGCAAGAAATTGGTGGTAGTACAACAAATGGTGGTAGCCGAAAATGTAATGGTTCATGG ACAAACTTTGTGCATGTGTTCACTTAACGTTACATTGAAAATTTCCGAGTGTAAAAGTGTAACATCACCT AAAATGCCAACCGTGATCCTCACATGTACACTTCTATTAATCTAAATATTTAAAATGTTGAGTTTTGTAC CGTCATGCCAGCACCATTTGTTTTTGAATCGTACTTAAATTTTATACACATATTTAATTTTTGTTTGAAA GCATAAAAAAGGTTCCATCTTTTGCCTTGTTTAATGACTGTCACAAGTTTTTGGCTAATGTTGACCACAT TTCGTATAGTTTTAGTTTGGGTATCGTGTTAAATATTAATACAGTCGCAGGTTTAAGCCCCGCTGCAGTC AATTTCTTTGTTTAACTTAAAAAACAAATAATAATAAACTTGGGTTTCTGGCTATTTTGTTTGGTTCACA TTGTGAATACTTACATTACATGGCAATGTAATTGTTTTAATGCAATTCTTGGAAATGCACCTTTGTGTCC CAAAAGGTATTTAAACTTTTCATTTTTGCCATTTTCAATGGTATTTTGGTGCCTTTTTGTTTTAATGCTA ATGAGAATTTGCATTTTCTTGAGCAAAGTTGTGATGTCATTTCAGGCAGAAACCTCAAAATGTTACAGCC TTTTCAGCACCAAAAGTTGCCAGAAGTTTGGATATTTTGCCGTTGTAAAATGTTAGTTTCTTTGGTGATT CGTTTTTGTGTTAGTACATGGCAGCTAAGCCAATGAGCAAACAGATTTAAAATATAAAATAAAATAAAAA TCTTGGGCAAAATAGAGTACCGAAGTGAATACATCACGCGCACAATGAGTGTGTAAAAGACATTAGCGCG TGATTCAGACCGTGAACCACAGAAAGATTCCATATCTATGCCGTGAACCAACAAGCGCGTGAACTCCATT CATTTGCATGACACTTTCTGGTTCTAAACGACGTCACACTTCGGTACTCTGTATGTACATGTAGAGGACA ATGTGTGTGTAAAAGACATTAGCGCGTGATTCAGACCGTGAACCATAGAAAGATTCCATATCTATGCCGT GAACCAACAAGCGCGTGAACTCCATTCGTTTGCATGACACTTTCTGGTTCTAAACGACGTCACACTTCGG TACTCTGTATGTACAATGTACATGTAGAGGACAATGTGTGTGTAAAAGACATTAGCGCGTGATTCAGACC GTGAACCATAGAAAGATTCCATATCTATGCCATGAACCAACAAGCGCGTGAATTCCATTCGTTTGCATGA CACTTTCTGGTTCTAAACGATGTCACACTTCGGTACTCTGTATGTACATGTAGAGGACAAGTATCTTTGC TTTCAATACCGCAATAAATGCATCCCTTGGGCACTTGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds