Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038191192.1 PREDICTED: Patiria miniata 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-4-like (LOC119721224), transcript variant X3, mRNA CTTAAGATGGTGGTCAAGGACCCGTACTAGTTTTATGTACGCATGACATGATGGATGACTAACGAGACGT AACTAAGGCTATAGTGAGTTCAACTGCAATATCAGTCTGACCTGGCCTTTACCCTTTCAGTTTATCATCT CGCTGGAGACAGGTTGGTCGGAGCGTCCCTCAGCTTGCACAAGACCATCACCCAGGCACTGAGATAGTAA GATCTACAAGATGAGTTTCTTTTCCAAAAAACTCCGAAAAGGAGGCAAGAAAGCTGACACCGAGACGGAC GCGTCCCAAGTGAATCCGGTATTGCAACACATGCACAATGGAACCAAATTCACCAAAGTCCGAGAGAATG GTTCCAAAACCTACAGCCGTAACTTTGTCTTGAGCGATGACTGCCTAGTGCTAGAATACCACCCCTCGAA GAAAACGTCGTCTCGATCCAAGATTCCCGTGCAGGACATCCATGAGGTCAGGACGGGCCATGAGACCGAC ACCTTCAAGAACAACAAGATCAAGTCCAAGTACGCCTCGGAGCTGTGCTTTGCCCTTATCGTCGGAGCCG AGAATCATACCATCAACCTGGTGGCTCCCACAAAGGAGGAAGCTCGTATGTGGGTCCAGGGGCTACGATG GTCCCAGAAGAAGTCTCAGAACATCAATGTCAAAGACAAACAAGCTGTTTGGATCAGGGAGGCCTTTGAG AAGGCTGACAGGAACCAGGATGGCTCAGTAGACTTTGAGGAATGCCTGAAACTCCTCAAGAAGATGAATG TCAAGATGGACAAGAACCACGCCAAGAAACTCTTTGAGAAAGCCGATGTGCGGACGCATGAAGATGCCAA GGGCAAGACGGTCTCCAACGCTCTGGATGCCGAAGAGTTCATCAATTTCTACCGGATGGTCACCCGCAGA CCGGAACTAGTCAAAGTCTTTCAAGAGTACTCAGGGGAGGATGACTACTGGACCTTGGAAGAGTTTGTGG AGTTCATGCATGAAGAAATGAAGCGATTTCAAATCAAAGCCCCATGGTGCAAGGAAATCATCGAGAAGTA TGAGCCGTCGGACGATTGCCGCAAGCGTAACATTCTCAGCTTTGATGGGTTCCAGTTGTTCATGAAGGGT GCCAATGGTTTGCTCTTCAACCCGTTTCACAGCACCGTCTACCAGGACATGAAACAGCCGTTCTGTCATT ACTTCATCAACTCCTCGCACAACACCTATTTGATGAAGGATCAGCTACGAGGGCCTAGCAGCACTGAGGC ATATGTGCGAGCTTTGCAGAGAGGCTGTAGATGTGTGGAGTTGGATTGTTGGGATGGTTCCGACAAGGAG CCTGTTGTCTACCACGGTCACACACTCACCTCCAAGATCAAGTTCAAGGATGCAATGGAGGCCATTGGAA AATACGCCTTCGCAACGTCAGAGTACCCATTGATATTATCCTTGGAGAATCACTGTAGCATCGAGCAGCA GAAGGTCATGGCACACCACATCAAGGCAACGTTTGGCGATAAGATTTACATGAAGGATATCACATCGGAG CAGACAGTTCTGCCTTCTCCTGAGGACCTGAAGGGGAAAGTACTCGTCAAGAACAAGAAGCTACCGGCAC CGGCTGCGGCTGAGACTACTCAAGAAGATGACGGCGATGTGAGTGATGAGGATGAAGCGGCCGAGTTGGA ATCCAACGATCCGGAATTCCAAGAAGAACTGGCTAAAAAGGACAAGAAGTCTAAGTTGAAACTTGCCAGG GAAATCTCCAACCTGGTCAACGTCTGCAAGAGTGTCCACTTCAAGAGTTTTCAACATTCCAAGGAAAACC ACAAATGCAATGAGATGGTCTCCCTTGGTGAGAGTAAAGCCTTTGATTTGGCTAAGAACAGCGGTCAGGA GATGGTAGAGCATAACACTCGCTTCCTGACCAGGATCTACCCTGGTGGCCGACGGACAAACTCCTCCAAC TACAACCCCATGAAGATGTGGACGATTGGTTCACAGATTGTTGCTCTGAACTTCCAGACACCATGTGACG AGATGGATCTGAACCTTGGCAAGTTCCAGCAGAACGGCAACAGTGGCTACATTCTCAAGCCAGTCTTTCT TCGCAAAGCCAACATGCAGTTCAACCCTGACAGCCCTGGAGACCAGTACACCCAGAAACTCACTCTCAGG GTCATCAGCGGTCAGCAACTGCCCAAGCCATCCGGATCCAAGGAAATCATTGACCCCTATGTCAAGGTCT TCGTCCTGGATGTCAATGCCGAGTACGACGAAAAGACAGAAGTAGTGGAAAACAATGGGTTCAACCCAGA GTGGAACCACATCATGGAGTTTGAGATCAAATCCCCAGAGCTTGCCATGCTGCGATTTGTCGTCTACGAT CACGACCGACTGAAGGATGATTTCATTGCTCAGTACACCATTCCCATCGCCAGCATCCAACTAGGGTATC ACCATGTCCCTCTGCTGTCCATGGAAGGTGACGATCTGGATCCAGCCACGCTCTTTGTCCACACTCTCAT GTCATCTCCTCAGACTAACCGTTAATTGTAAAACTAACCCTGGTTAGTTGGAAACCGGTTAGTGGTAGAT ACTGGTGTTTGGTTGAATCTGGTTAGTGGAAACTAGGTTTACTGGCTTGAACTGTTGAAGGTTTTTAAGT ATGTCCGCAGGCAATTCTTGAGACTTGCCAGGACTGGCAGTCAGTGTGTTTTTTAACGTTTTTAACCACT TATAAAAAGTAACTTCCAACAGGTTTACATAATATAACCAGGGTTAAAATGTGAAGGTTTAGTTAAGCTT AGTGGACTGGTATAGTTGTATGTCCTCTTGATATGATTTTGTGAAACTTTTTTATGTTTTTTACAAAACA TCTTTAAAAGACCATTCCCCATATAAAATAAGAAGAACGACAGATGGGTTTTTAGTGGAAACTGATTTGT TAAATTTTGGGGGTATATTTGTAGTGACCAAACATAAAACGTGTAGCAAGAGGTTTTTACAGGTAGGACA TAAACAATTTAAGAAAGAAAACAGCTGAATAACTGCCGATGACATTTTAAACAATTTGACTTATTTGTAA ACTTTTTCTACCCTTTTTAAGAACAAAATTCAGGTCATTGGAAAATTATTTTTTTAACCAATCAGCATCG AGTGATTGCACATTCCTTAAGTTTTTTTTTATCATAAAAGAAATGGGTATTCTTGTACAACATTGGTTTT TGACAGTGAGTGTAAAATTCTATATATGGTTGTGAGTAAATGTGGTCTGGTGACACGAAAGTAGAACTGT AATGGGCAAATAATGATAAAGCTAAAAACCTGCTTTACGCATTTTCATTGTCATTTCTTGCAGTTTGGGA ACTAGACATTGTTAGGGACGGCAATTTCAGTCTAAATATATCTAAATTAGCTTCACTTCTGTCTGTGACT CAATACTGTATTTTATAACTTACCTCGGTATTTAACTTTAAAAACCCAACATTTTGCAAGTTTTGAAGAC TTTATAAACTTTTCTAATTCTACTACAACTCCTAAGTCTTGTCCGTTGCTGAAATTTCCTCTTTTTCAAT ATGCAGTTGAGCTTGGGTCTAGATTTTGGAGACAAAAAGACGGTCTGTCGAATGCTTTTTTTGTGACAAA CTTCTACAGTTTTTACTCAATGGAGAATGTACATGATAGCCTTAAACATTGCATTAGCCATGCAATGTTA CATGATGTTAACTATACCTTACATGGTATACTACACATTTTTTTGGGGGGGGGGTACAACTAACTGACTG CACGTATCTTTTTCCGCAATATGTTTTTAAAAATCATTTTATTTTTCAAGTGATGGAGCTTCTTATCTGC TCTATTTTGAAAGAATCAAATTCGATTTTGTATTCAAGACTTGATTTCCGATGGGGCAAACAAAGAAAAC TAAATAAGATTTTATTATTTTGCCAAATTACAATTCGTGAAATGTGGTAAAATGAAGTGATAAATTTTTA CGACAAAAAAAAAACAAGAAAGAGGAGATATACAAAGTATTTTTTTTACGCTAGAGTTTTTAATATTGTA CGTGTACTTATATTAGGTGAGACACATTATTAGTAGTTTAGGAAAGATAGAATAGAATTAGTAAAATATT ACAATTTTGAATATGGTGCAAACATAAATTCAATGTAAAATGCTCCTGCTGAAATTCTTTGCTTTAATCA CAATCAGACAATCGTTTGATATTTTGCATAAAAAAAAGGTTGTATGTTAGTTTTGAATGGATATTTTTTT ACGTTATCACGTGTATTAACAGAGGTTACTTGCTCATGCTAAATATTCTTATTTTTACTCAAAATAATGT TTTTGTTCATGGCGATATGGCTCTTGTGGAAAATGGGTAGTTGTTTATATGGTGTTTGAGTGGTGGTTTG GAGGAGGCAACATGGATGTGTCAACTTTTATTGTTTTAAGGGTTCTTTTTGTAATATTCAGTGCCAAACA TCAATATAGGTTTTTAACAATATTTTTTCATACCTGATCAAATAATGGTTGAAATTTCAGTCTATAATAT TTGCATGAGCTCTTTTTAACTTTTTAGGGTATTAACGTTTGTATGTAATATATTAGCAATATATGGAATT AAATGAGAACAAAATGAATTGGAATGTCGCACAACTCGTATGAAATTCGGAAGACATTTAACTGGAATCA TGTTTCAAGAATACATTAGTGTCATAAAGTGGTAAGAGCAATATTTGTATCTGAATTACAGAATTTTACA TTCTTGTATTTATGTACGAACAAATAAGATATATATTCATTCCAATAACAAGTGGGCCATTTCATGACAA ATGCAATCATTTACATACTCAATAAAAACTTTTAGCTGTCGTAGTTATAAAATTCATTATTCTTGGTGAT ACAAATTCGACAAAGTTACAATTTTAGCTGAATCGGAACCGCTTTTCATTTTCAATAATCATTTCTCAGA TTTGACATGAAATGGCCCAATTTTAATTCTGCAACTTCTATTATTATTCTGTGCTTACAGCGCTAGCAAA GACATTTTCTGCGCTAACCATGTAAGCACAGAATCCTTAGTTATGGGTGTACAAATGCATGTACTGCAAA ATCAACTGTAAGCGCATAATGTTCAGTTACAGGCAGCAGAAATGTTGTCGCTTGCTGTAAGCAAAGTCAT AACATTGGGCCGTCATTCCAATTTGATAAAACCGCTTAGCAAGAAATGTCATTCAGTAAATTGTTGTGCT AAGCTAAAATTAGCTGGAAACCAGCCGAAAGCAATTAACATTGCATGACGCTTAGCTGGTAACCCTTTTC TGCTTATGCTTTCCATGCTTCGCTGTTTCATGAAATTGGGCTCTGGTTATAGTATTGGCAACGGGCATTG ATACAAATTATGTACTTCCTTCAGTATTGTGTCAAACGGTTTGTGCCTTCATCTCATTCTAGCCTTTAAA TTGACTTCCAAATGGACGTTTACGTTGGAGACTTGTGGAACTTAACTTTGCATGAGAAAATATTTAAAGG TATATATGTTTGAAATCACAATAAAAGAAAAAGGTGTTGTCCTATATATATCAGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds