Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038190901.1 PREDICTED: Patiria miniata cGMP-specific 3',5'-cyclic phosphodiesterase-like (LOC119721031), transcript variant X2, mRNA CTATGCCGAAGACTGAATGTGCAGATGTTTATGGTGTATCTGGACAAATGAAGGCATTTAAGAGAATTCC AGTGTTGTGTGAGTTTACCAGGTACTGTAGATATGCATATCATCCGTCAACATCATAACAGGCTTTTTCG GTCTCGAGCAAAATGACACTGGGAATCGGTTTTGACCGGCAAATGCAACCACTGCGTGACAAGTTTGTGT GGTGCTATTTCCTACTCGGTTCAGCTGCCAGTCGTCAGGGGCCTTCCAACAACTGGACGAGCCCAGCCAA ATGACGTTTCTTTATTTTCTTCGTCAGTAGTAAGTACAGTATATGAAGTAAATATTACAAACTTTAGTGA ACAGTGTTTATATATCGAGAACACCGAGGGTAAAGGCCATTCAAAATGTCGGAAAAACGGGACGTGTGTC GTGAAGATGTCGAGAAATACTTGGACACCCATCAAGATATTGCTGTGGAGATTTTTGCCGCGAAGGCCAC ACCAGAGTTGGTGGATGGATGGCTGTCTAAGCATTCGGTCGGACATGTTTCAAAGAGTATGTCTAGCCAT GAAATTGGTTCTTGGCCTGATGTCTCCGCCTGTGCGTCCAACACGGAGAAGCACAAAATGTTGCACTCCC TGCGGAAAAGTTTTGCAGGGGCCAGTGGAAGTTTGCGGAGCCTGTTGTCACCAAGGAAACGGAAAATCGT GCGAAGAAATAAGTCTGCGCTTCGGCAGCTTGACGAGAAAGATTTATTTATGGAACTGATTCGGGACATA GCTGATGAACTTGACCTACACACGCTCAGTCATAAGATTCTGATGAATGTGAGTATCCTGACAAATGGGG ACCGCTGCAGTCTCTTCCTAGCCCGTGGAAATCGTGAAAATCGCTACCTGGTATCAAAGCTCTTTGATGT GACAGAGAATTCAACAGTGGAGGATGCCCTTCATACAGAGGCAGACGAAATTCATATACCCTTTGGACAG GGTATAGCCGGGCATGTGGCCCAAACCAAGGAGACGATCAACATCAAAAATGCATATGAGGATCCTCGCT TCAATCCGGAAGTGGATAAGCGAACGGGCTACCGCACCTACAGCATTCTGTGCATGCCCATCATCAACCA TGAAGGCGACGTGATCGGAGTGGCCCAAGTCATCAACAAGGTCTCCGGCTCCCATGAATTCACCAACAAA GATGAGGAGGTCTTCAGGAATTACCTGACATTTTGCGGTATCGGCATCATGAATGCCCAGCTGTTTGAGA TGTCCGTCAACGAGTACAAACGCAATCAGATGCTACTGCAGCTGGCCCGTGGCATCTTTGAGGAACAGAC CTCCCTGGAGAGCGTGGTCCACAAGATTATGAAGGAGGCCATCACGCTGCTCAAGTGCGAGCGATGCTTG GTGTTTCTTCTCGAGGATCACGATAAATCGGCCTTTATGAGCGAGCTGAGCGAGCTCAGTCAATCCACTG GTACGCTGAAGGCGTTGGAATCACCGACCGCTGTCAAAAGCAATGCCGATTTGGACTTGACCAAGGAATT TCATGCAGGTTTCAGCAAAGCTTTTGACCTGATGGCCCTGAAGAAGGAGGAGATCAAACAGCCAAGTGAT GACATGCTGAAGAAGTCAGTATACAGTGAGATAGCTAAATATGTGGCTCTGACTGGAAAGACCATCAACA TAGAGAAGTTTGACACCCAGACCAAGTTCAAGCTGATCTATGACGCTGACAAGAACTTCCGGCTGCACAC CTTGCTCTGCCAGCCCATCTACAACAGCCAGAACAAGATAGTGGGCGTGGCCGAGATGATCAACAAGACG GGCACCGCCCTCAACCCCACCTTCACTGACCAGGACGAGAACCTGTTTGAGGCTTTTGCCATATTCTGCG GACTGGGCATCCACAACACGCAGATGTACGAGAGCGCCGTCAAGCTAATGGCCAAACAACAGGTGGCGCT AGAGGTCCTGTCGTATCACGCCACGGCACAGCAGGATGAGGTGGAAAAACTCAAGCAAGCTGGCCCAGTG GAAAGCACTGAGAAGCTGAACCTGCAGACGTTTGCCTTCAGTGATTTCACCCTGGTGGAGGATGAGACTC TGCAGGCCTCCATCTGTATGTTTGAGGAGTGCAACCTCATCAACAAATTCCACATCCCTTATGACGTCTT GTGCCGTTGGTTGTTGAGCGTACGCAAGAACTACCGACCCGTCATCTACCACAACTGGCGACATGCTTTT AACGTTGCACAAACCATGTTTGCCATGTTCAAGACTGGTGGAATGAGCAAAGTCATGTCTGATCTGGAGG CCTTTGCTCTGCTGGTTGCCTGCCTCTGTCATGACTTGGATCACCGCGGCACAAACAATGCTTTTCAACT GAAGACTGCTTCAGCTCTGTCCCAGTTATATAGCACCTCCACCATGGAGCATCATCACTTTGATCACTGC ATCATGATCCTCAACAGCGAGGGGAACAATATCTTCCAGTTCCTCTCGCCCGAGGACTACCGAGAGTTGA TTCGCATGCTGGAGGGTGCCATACTGTCCACCGACTTGGCGCTGTACTTCAAGAAACGCAATGATTTTTT CAAGCTGGTTGAGCAAGGAGTGACGGACTGGGAGGAACCTAAGCACAAGGACCTGCTGAGGGGAATGATG ATGACTGCCTGCGATGTGTCGGCCATCACTAAGCCCTGGGAGGTCCAGCGCCGGGTAGCCGAGCTGGTCG CCAGCGAGTTCTTTGAGCAGGGCGATATGGAGCGGGAACAGCTCAAAGAGGAGCCCATTGCCATGATGGA TCGGAGGAAAAAAAGTGAACTTCCCAAAATGCAAGTGGGGTTCATTGATGCAATATGTATGCCCGTGTAC AAGATCTTTGCCGACACCTGGCCAGGATTGTCTCCACTTTTGGAGGGTGTCAAGCGTAACCGTGGAAACT GGCAGTCCCTCTCCGAGGGCAAAATTCCGGAGGATGAGAAAGCCTATCTCGCCAAGCATGCTCAGGAGGA AGCCGCCTCCACGTCCAAGGGAGTGGCCGCCGCCCCCACCCAGAGCAAGAACCAGAAGAACTCAGTGGGC AGCACCACCAGCAACGCGGTCAGCAACCAGTGCAAAGAGGCCCTGGCGCCCAACAAGAACCGCAGTAGCT TCTGCGTGGTGGTCTAGTCAGTCCCAACAGGATTCTCCCCTTCTCCTTACTACGTTCATCAGCTCCTTAA AGTGTGTGACAACCGTCTCTCACACTTGTATATGAATGCACGGTAACTCGGTCAGATTCAGTCCTTCCTA CTGTTTGTAGATCTTCCTTCTTTGTGGTGGTCAAACATGTCCCGCGTGGCATCACAAAAAAAAAACATAG AGGATCTGTGTGGATCTAGTTGAAAAAGTGCTAAAGATGTTTTATTCACTTATTATGGGTGCTCGTTTCA TAATAGTTGGAAAACTGAGTTGGACAAAGATGCTGATGCACACACTCCATAAACTAGCAATAACATGTCT GTGCTACTAATTAACTTGGTCATGCCGGCTTTAGTCAACAGGTCTTTAAAAAAAAAAAGGACTCTGTCAT CAGTAGGCTTTGGAAATGCTCCAAAGGAAAAATTGTATCCGAAAACCAGAGAGTTAATCCTGAGAATAAG GATCAAAATTCTAAACTTTGAATAAGGCTGCCAGATGTTTTGGATGGGTATAGTTCAAGTTTGAAAACCA TCACAGATTTTTGATGAATTGTTGGTTATTTTTTTTTCAATTTTCAGGGAAAATGCTAAATACATCTCCA CATAAAAGGTTGCGCGGGGAGGTAAGGCCCAGACGTCAAGGTTAAACATAGTGTACCAAAGTCAAAATGG TTTTGCTGTACCATTCCATAAGAGTAAGGCCAAACAAATTGTGCCACAGGCTTGCATATTCTAGACCATT CCTTGTATTCTTGCAAGTGAAAATGTGGCTCCTGAATCTGTTGACCAGTTCACGCCGGGATTATTTTGAC AAGAACGCCATGAGGCGCGGGATTACTTTTCTCTCAACCTCATGCCGGGCGGGTTGAAGACATCACCCTC GGGCAGCACACTCATATTTCCGGCCTCGCTCGCTGTGAGCGGGTTGCTGACAGATATTTCTGGCCTCGCT CCCTGCGTGTTTATCCGTCATCCGTTCCGAATACCGCAAAACCTTTTGCGGGTATACACGTTATCCGTCG CGAACTGGTAAAGCAACTTTACTTGTCCCCTAATTGAACCTTAAAATATCTGGCAGCCTTATGTTGATCT CAGTTGGCTGATATAGTTCCCAAGAAACATTCTGCCTAGGTTAGGATGTAAAAATAAAAAAAGATAACAT CAGCATTTTTAAATAGGTCTTCAGTATTCAAATACAGTATTCACTGTGGTGTGACTAAAACCACACATTC TCCCCAGCCTCAAGTATTAGTAACCAGTTTGTGTTGTCATAGGGTGTTTTTCCGTGTCCAGATGCTTCAA CTGGAATGGCCTTTGGTCCAAAAGCAACGTGTTTTGTTTTGTTCCAAAACCAACGATCTTAAACATCATT CTGCTCAATTCGGTTGCAACTGCCTTTCTCGCTTTCATCTCAAATTATCAATTTTTATTTAAAAACTACC ACAATAAAACCACCAAAAGCAGGTGTATTTGTGCTCAATGGATCACTTTTTATGAAACTTCGACGTTTAC GTGTGTGTGTGTGTGTGCAATAAAACATTATGTTTGGGGTTAAGAAAAGCGGGGGAAAAATTGTTCATAT TTCTTTTTATGCAAATTGTACATTCAGATAGCATATTCAGTGAGTAAATGCAAATTCATTATATATATTA TAATCTATATCGGTTACGTTTTAAGAGTTGACTGCTTGTGTATCTATAATTTATAATTTATCTTTTTAAA ACGTTAGTTTGTTCATTTGAAGAGATTTAAGTTTGATTGTTCACGCCAAGATATCTTCAGCTTGCCATGA GATTTTTTTTTTATAAAATGATTTTGTGATTCTGTGGGAAAGATTACATAATTGTTTAATCAGACTAAGT TGGACTTTACCGGATAAAACAACCTGCCCTCAATTAAAGCGGTAAACTAGCTGATTGGAATCCCACAATT TCTTGTGATTTGTACTTAAGCATCCCACTGCATATTCATGGTGGGAAAACGGAACTTTTCTCTCTTCCTT GAGGTGAATGTACATAAATGAAGCTTTAACGAGAAGGGTTGCCCTGGAAATTGGGACGCCCTCAAAATAT CTTAAAGGAGGTGGTAGCAACAGGCCATCGTGAGTGGCTGAGGACTCGGCCCAGTGCTGTATGGCTTGCT TATCCTGTGTTGCGTTAAAGACTTTCTCAGGGTTCACCGTGTTTCACAACTTAACTGTAAATAATGTTAA ATAAAATGAAAATGAACTAATTTAAACAAAAAAATAGATATATTTCAGCCGATGTATAGTAGTTGGTTTT TGTGTTCAGGTTTTAAGGAACAAAACGTTGACTGGTTTCGATTAGTTTACACGGCCGGTGTCAAATTTTT TTTTTAAGTTAGCGAAGGATTCAGAAACAGTCGCTCAACTTCTTTCCAAAACAAAAAGACAATCTGGAAA AAAATTGTGCAGATTATAATTTTCCTGATCTGTCTACATCTCCTTTGCAATTTTTGGTGGTTACCACTTC CACCTCGGGAAATTAACTTCGGGTAACTCATGGCGTTTCCTTGATTCAGCCAAAAGCTGGATTCTTCGCT AACTTAAATTTAAAAAAAAAAAAAAAGGCACACGAGCCAGGGTGTTTTTGAAGCACGTTTAATAAATTGA ATCTTTTCAACTATAGCTTTGTATGACAAAGAACATGTTCATAAGTGTAATTTATATTATAGTTCTTTCA GATTTACATTTTTTACTAGCAGCTTTTCACAGTTTAGCGAGTCAACACTGTTCATACTATACTGTAATTA AAAAAAAATACGAGTTTAATTACCAAGTGATTTATGCATTAACCGAATGGAGATATGATGGTTATATATT TCCCCAATTTGATGTGCACCAGATAAGTAACAGCATCTGTATGTATTGTAGAGACTGCACATCCCTGTAT ATCACCGATGGTATCTTCCAAAGCACACGTGTTTGTAGGCAAAGCCAGGAGGCTTAATTATTTAAAAAGG TGATATTTTTTAAAAAGTTGAAGTGTTCATATATTATGCAAGTTTTATCACCCGGCACTGCAGACTAGAT TGGAATGCATACATATATATGGCTTGATAGGGATAGCAATTATATATGAAAATTTGATCAGTTTCGATAC GGATTGTGTTTTAATTTTTAACACTAGTCCGTTCTCCCAACACCCTTGCTAATAAAATGGACAAATGTGG GCACAGTAGGGTTAGCAAGTTAACACGGCAGTCGCGTAGTGAAGCTTGCGTGATGTGTATGTACTGCTTT CAACTTGGTCTTAATTAGCTGCTGCCACTGTACAAAGTGGAGTATACGATACTTAGTTGTAGGTCATAAT ATGCATATGTTAGCAAAAAAATTTAACAAATCATTTTTCATTGGTTGCTAAGTGCTGTGACGATATTCCT ACTTTCTAACCTGATTGGCCAATTCAATTGCACAATTAAGGGTTAGACTTAGCCCGGTATCTCCACGTAT TGATCCCCTATGAGTGGTCGTCTTTTCTGACTATATTTTAGTTCACTTTTACTAGTGAAAAATCGGCAGG CGTGGCAGAAAAAAAAGAAAATTTCAAGCCAATCTCTTGCCAGATGCTTCATGTACAGTGCACGTTATTT CAAGTGAGATACGACAATGGGTATTCCTGTGTGCTTTTCTCAATTTTACAGTATTACTTGAAAATGTCAA CCTCATTTTTATTATTTTGGGCATTTTGAGAAAGTATGGAGTGTAAACTAAAAAATCAGCACATTTTTGT GTTGCATACTGCATGGATCATCATCTTGAAGAGTAAGGGGGCTCATTTTTCACAGATTTCTATTTTATGA AAACTGATAATTATTAGGGAAATTAAAAGCAGCTGTTTTGAAAGAAGGCTTTTTTTTTGTTCATTGAAAG TCCGAATTTCAAATTGAATTCTCAAGGTCTTGGTTTAAAATAAAATGCACGATACACCTTTTTCAAATGT CAAGTACTCGATATGATAAAAAATAAATTTCTCTGCTGTAGAATATGCATGTTGTCCCTTTGAGCAGCCT AATCATACAAAATTAGAGAGGAAATATTCCACATAAGTACCCTTGCTGCAAGGAATTGATACATGTTATT CATTGTAATTCACTGTACAAACTTACAGATTTTATAACAGGTAAATTTCAATTGATAATTATAAAATACC ATTCGAATATTCAAAGTGGGGTCGGGTCAGTGGTATGATATTGGGGCTTTCATGATGTTTTAGTAAGTTT TTTTTAATATCCAATACCCTCGAAAAAATCTTTGAAAGCCTTGTACAGTTTCATCTTGGCAGTTACTGAT GGTTAATTTTTTTACCCATTTGTTAAAATCAATTCAGTAAAACGATTTAAGGCTTTTTTGATATAATTGC TTACAATATGTTACTAGGCCCAGGCATGCTAACGTTAAACCTTGTTGCTTAAAAAAAAAGCGTTTTGTTC TGAAGCTTTTCTTATATTAATCTGTGTTGGCATTGTATTGATTGTTCAGAGAATGAAATAATTATTGATG ATGAATACAATATAAATGCAGGTCTGATTTTTTTTTTTTACGATCAATTTTTGCTTGTGTTTTCGTAACT TTTTGATCCAAGCAGACACTGCGACAATATTGATAACATTTTGAATGCAAAAGCAAAAAAAAAGAGAGAA AAATCCCCTGGCCAGTGTTTGTGCAGTTTAACATCGAATATTTGTTCATGTTTTCATTGTGCTGTGGCAG GCATTGATTACATTAAGTATCTTTTTTTCTACAAACAAAACAAAAACTTTGAAAATGTTGTAGATTGGCA TCAGATCTGGGCCCAATTTCAAAACAGCAGAAAATTTGTTCCTAGCAAACTTATGCGCTAAGCAACGCTC AGCAGACCAGTCAAGAGCAATAAACATACAGCATTTTGGCTGGTGTTTTCTGGCCTCGGGTCAAAAAATT CACCGTTATGGTATATCATAAGAGGTCCGTTTTCTTCTTGTTCAAAACACAGAAACGTATAGAGTTTCCT TAATTTGAACTAAAATGCCAAATTGAAATCCTCAGTACATCGGCCTAGTGGACCTAAGTACTAGAGTGTC ATTATTCACTGGTTCACCACTCGCACCACAATCAGCACTGTTACTAACATTATATTCATGTAAAGATTTC CTTTGTAGCCAGATAACGGTTGAAGTACTATTAACAGAAGGTAACTCATTAAATTATTTTGTTTCTGGTA CTTAAAAAAAAACAAAGACTTTTTAATTCCATCCATTAATTAAAACACACCATGTTGCAATATTATACTG CCACATAGTTGCAATAAACTGTTAATTAATTCCTGAAGAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds