Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038190198.1 PREDICTED: Patiria miniata transcriptional adapter 2-beta-like (LOC119720502), transcript variant X2, mRNA TTCTCGGTTTCAGATCACCAGTGCCAGCAAATATTTTATGTACAATCAGATGGGATACTACGCTGGTAAC CGTCAGTATAACCAGACGTTACGTTGCATAGCCCCAGGCCAAGGTCATCTGACGTCATTAGTGCAGCGGT CATGGGGCGATTCCGAGTGAGGAAGCAGAAGATGGCCGAAACGCCTACGCGGTTCTACTGCAACTACTGC CAGGACGAGCTAAAGGCGTTCAGCGTGCGATGTTGCGAGTGCACGGACTTCGACCTTTGTTTACAGTGTT TTTCAGCTGGTGCTGAGCTAGGATCCCATCAAAGAACCCATGACTATCAAATTATTGACAATGCACTTCT AGCCTGTGGTGACAAAGAATGGAGTATGAGCGAGGAGTATTTATTACTAGATGCAATAGAAACATTCGGC TTTGGAAATTGGGCGGATGTTGCAAGTCACATAGGTTCCAAATCCCCAACGGAAGCCAGGGAGCATTATG ACAGCAATTATATACACGGTAACCTGGGCAAAGCTGCTGTTCCAGAAAAGCCTTCCTTCAAAGTTCAAGA CCACACGGGGCCAGAAGATGGTCCTCTCTCACCTAGTCTTAGAGCCACATTTACACCAGTAGAAATGTCA TTAGCTGACCAGCAGGAGTTGGGTTATATGCCTCTCAGAGATGACTTCGAAAGGGAGCATGACAATGAAG CAGAAACTCTAGTTAGCAATTTAGCAGTAACGAATGAAGATGATGACCTAGATATCACTTTAAAACTTAT TCATGTTGATGTGTACACAAGTCGGCTCAAGGAGCGACAGAGACGGAAGAAGATATCCCGAGATTTTGGC ATCATCACGGCAGCGTTGTCCTCAACGGCCAGTAAAACTAAAGATCAGAAGGACCAAAAATCTACAGCAA CACCAGTACCTAAGAAGAAACCAAGCAAGGAAGAGACAGAGCTGAAGGAGAAGATGAAAGCTTTGGCCCA ATTCCAGACAGGCAAAGAACAGGAAGAGTTCTTTGAGAACCTACAGAAGGAGAAAGAGATCAGGGCAAGA ATAAAAGAGCTGATCAAGTACAGAAGAAATGGCATCACGAAAATAGAAGAAATATCGGAGTATGATGAGG CCAAGAGCAAGCGGGATAAGAGGAAGGAAGGCAAGAAAAAGATTGTTGACAAGAGTAAACGAAGTGCAGT CATATCCGCCAAGAAGACTGAACCTAAAGAAGAACCCAAGAAAGATGATCGTGAGATCGTAGAAGATGAA TTCCAGGCAATAAAAGCATCTCCCGGCTTCAACTATCTGTCAGACAGAGAGAAGAGGCTTTGTAGCTCCA TGAAAATGAAACCAGCTCGGTATATAACCCTCAAAACAGTCATTATCAGGGACCATCTCATGCGACGCCA AGGTCTACCATGTAAGACCCGTTACCCTAGCAACCTAGACAAGTCACACCGGAAACGCATCACCAACTAT CTAACCAAAAGTGGATGGATCAAGGTTAGCTGATGAGAGCTCCTCCTCTAACTGCTGCATTTAACTCTCA GTTTCGTTGTTTTGTATTGTCGATATATTTGTATTGTAAAAATTTAAAAACCCTGAAGATTTGGACAAAT GGGAAACCTTTCCATTAAAAATAAAAAAGAAGAAAAAAACTAGAGATTCGTTGCAAGTCCTTTGTAAAAA GAAAGTTTTATTTATCAGGTCATGCCTAGTTTGTACATAGTTTAGTTCTCAGCTAAACACAGAGTTACAC AGGAGAGGAAAACGTAGCTTGCCAGAATTGCCGGCACAAACTTGAGTCTTGGGCTAGACTGTTTGCTGTC TTGTACAGGTTTTCTTGGAGATGGATAGATTGGGTTTATGATTATGAAACGGTGAAAGCCTGCTATCTAC TACATATCTAAATGCACTTTGTATCATTGGAGTTGTTTAAATGTGTACAGTACAGAGAAGTGTTGAGGTA CCCTTTGGAGACTAAGGGTACATGTACATTCAGGTAGCAACATATGTGATGCAACAGATGTGATGATGTG TCTAATTTAGATAGAATGTGCTTATTGGTATCTTGAACATTGGAGGATATTGGAGGATTCAGGAAGTTCC TGTGTGAGTTTGGGTTAAAAAGCTCAAGTCAATTAATAGTAACAAGTCAACGATTATTATGTTTGTGGCC TTGGGCAAGTAGTCGCATTTTATTTAAGTCAACAGTTTGACACTCTCTCCCTACTTAATTTTACCATAGA GAAAGTCTCTATGGTTTTACTAAGTAGAAGACCATGTCCATCAAAATCCATCACTCACTCCGCTTCACTT AATGCTTCAGGACCAAATCCCTTGAAATCCACCACTGGTGCTGGTGGATTTTGATGGAATTGGTACACAT GGCTTATCTGCAAAAAATCCTCCCAAATGGGGTATGGATTTTGATGGAGTTGGTAAGGTTAGGGTTAACG GAATGTTTAGATGCCCTGAACTTCTGATAAACAGAGATTGGTTTTCTTCATTTGAGACCTTTGAGTATAT CTGCTAAATACTGCTTTTCCTGTGATTTTCTCGTACATTGAATCAGAAATCTAGCTACTTAATAAGTCTC ATGATATCAACATTGACCTTCAAATCACCTTTTTTGAAAAAAAATCTGACTGAAGTTTGTTGCCGAGTTT TCACAATCACTTTTGTATGGGGGCCCTTGAGGAGGAGCAGAGTGGTCCACTGACAATGGTTATAGCGCCC TCTGTTGATCCATATGGACTGTCCGGAGATGACAGCCAAAACGTTCTTGCAAGTTTCCTAACAGGTTACT ACATTTAAGAAAAACTTAAGTCATACTTTGGAATCCAGAAACTTAAGATCTTCCATGTGACAAAGTTTTT ATTGAGAACTGTTTCTTACCAAAATTGAAACAAATCCCAAAGTCAGAAATTCACAACAGCGTTTTCACAA TTGCATGGATATTTGAAATTTTACATGAAAGTAAAATATTATGAAAAAAAAAGAAAACTATTAAACACTG AAAATAATAGTTACCAGTGGACAGATATTGCAACTCGTCTTTTTCCTGTAAACTCTTTTCAGTTCCACAA CCTAAGGACCAAATTAAGCGTCCTGATTATGTTCACTGTAACAGCTCGGTTGTAAAGGCCACAAGGTCAG ATGTGTGCTCTCTGTCCAAAGTGTGTATGTAAAACAGTGACAGAGATCTTTCTTGTTCGGGGAAGGGACT ATAAACTCTTGGGTACACATTGTTCAGTTGGTGGATGTATTGGAGCTACGAGTACCATAGCACACTTTTC TTAGCAGTTCTTTTTCCCAATGAATAAACATGGCAATAAGGTTTTTTTGGTTACTGCAGGGTAAATTCTA TTTTTTGCTTAACTAATCGGCTCCATTACATTCTTGGTAGTAGCTTGTATTGTTCAGGCAGTGTCAAGCT GAAAAGCTTACTGTGATGGTGTCATGGTCGGTGTGGTGCCATATCGTGACGAGGACTTTTGACCTGTCAT AAAACAAGAAGCCACAATTGAAATTCTGGAATTCAAATGAAACTTCCAGACAAGCTGTGAACTAAAGGCA TTCAAACTCTGGTCTGAAGTCTGAATTTGTGTATAAGTTTTTTCTGTTTGAAGTCAAATTTAAGAAACAA TCATATCGGTGGGAAGGGGTGGTGGGAAGGGGTGATAACAGTGATTGGGATTGTGGTTTTCCGGAAATGT TTGATCTGGATAAATATGCGCAAACTTCAAAGTGCCATTTTCATGAGTCAGTGTGGTCACTTTGCAGTTG TACCGACTTTGATGAATTACACAGTACTGGGCTTTTCCCGAAACAGAAATATCTTGAGTGAGGTTTTGTT AAAAAGTTCCTATTGTGTAGTGTCAACCTCAAGTATTGTTGGGTCTGGAATGGTCGGGTCTTTTTGTGCC ATTCTCACCCATGAAAAATGTATTGGTGCTGGTTGTCTCTGTTGTAACTATGCAAGAGCTTGCCCAGAAT CACTTGATATTATCCACACACACATAAACGTGCTCAAAGAATCCAAATTTGTTATCCATTATAACAAGGC AGTCAACTCATAGTCAAGAGATAGTCATCTACCCAACTTGTGAGTAATGCATAACATTAGTGACGGGATC AAGCTAAATGAGTCATTTGTCAGGATTTTTTATGTGGAGATACAGGCCAAAATAGGGCCACTTCATCACA TTTCTTGGTGTTCCGACTTCCATAATTTTTGAACTAAAGATGGTATCAGCATGCAGTTTTCACAGCAGTT ATGCTGAGATTGTGCTCTTTTGAAATCTGTAATATTTTTTTTTTTAACCAGGGTTGACAAACGACTCATG CAGCTTGATCGCATCACATTTGTAGCATGGTATTATGCCCTCATTAAAATGTGCAATATTTCTTTGAGTA TATCATACATTGGCTGGGTTATGTTTGATATTTAAGAGTCCCATATAGGTATCAGTAGAATATCTCAGAG GTTGTGGATATGCACTCATTCTATGTGGAATCTGGCAGTCCACTGTGTATAAACAAAAAGGGAAGGACAC TTTAATCAAGTCAATTATAAGGCAAGTCACAAGTCAGGTAGCAAGAACGTGGAGATGAATATTAAGAAAG GAATGCCTCTGTAACAGTTTATTTGAATAACTTTTGGTTTGACTTCAGACTGGATTACTTGTGATTGACT TGTGATGTTTTATTATGACTTGGTTGCATACATACACAATTCCATGACAAAAAGTGGGACTTGGTTATAC TTTGTCTAATTTAAGACAAATGAACAATTATAAATTGTAAAAGTATTCACCGTAACACCCATCAACTTTT AAGTAAAACAAAGCTGAAATTGGTTGAAGAGACATAATTTATTAGAGATTCCATGCATAAAATAAAGTTA CTGGAGTGATTTGATTGTTTTTCAATTCAATTAGTTTGTTGGTCACTGCATTTGGCTTTTTCAATACTTT ACCGTTTGTTTTGGCACCACTTCAGCCTTTCAGTTGAATGAGTTTATCAACATTTGGATATTTTAGACAT TTCAAATGTAAATTCTTTGTAAAACAGCATTTCTCTCCTTTTTTTATCAAAATAATTGTCTGCTATTGTG AACCTTCAACAGATATTTCTTTTACTGAAGCTTATACAGTGTCCTCATATTTTTAATTGCCAACTTTTTG TACTAATAATTTCCATTTCTACAGTGTCCTTTACGTGCAGTACTTTCAAGGTTCTTTTAAAGTATTAGAA CTTCTTTAGCTGTTTCGTGAGTTTTTAAAAGTGGTGTTGTTGCAGCGAGAACGCACAAACATTTTTAAAA TATTTTCTTTTTTTAGGCCTGTTATGTATATACATGTAATGTGATAATCTGCCAAAACCGTCCAAGATCC CCCTCTTTTTTTTAATGATATGCTGTCACCTACGTTCCATGATTTGTGTTTGCACATCTTTTCAATAATG ATGTCCTCTTCCGCTATTGTTTTATTTCTTATAATCTGGGACAGTTATTCGTCTAGTAAACGTGCCACCA AAGTTGGTTCTTTAATTTGTAGACTAATAAGTACTTACCTAACCTTTGCAAGGGGTGCCAAGTTTGCTTT AACGAAAAATCTCGCGCCACACTTTTCCCCCCTACTTTATACTTTTTCTCTCTTTGGGAAAGATGGAGGC AAGCACAAGTTGGTTAAAACTTGTCATAACATGTATTCAGTAAAACAGTATTTTGGTCATATAGATGTTG ATTTAAAGGTAAGGTTTAGTTATTATGAATTTGATAAGGCCCTTCAGACCAGTTTCCTTGATTTTGGTAA TATAACTGGTTGTTGTCACCATGCATGAATCCACACAAGAACGGAATGTGAGATGAACTCCATCTGTTTC ACATGTGATTAATTTTATAAAAGTACAAACTTCCTTGGGTGACAGAAAAAGCAAAAACAAAAAGAGGTCA CAGGTGCTAGTTTTTATTTGGAACAGCAAAACAGCATGAAGAATGTGCTAAAGCTGGAAGGGAAGAAAGA TATTGTCCAGAAAAACTGCTATTCAGGTTTTTATGTTAATGCTCAAATCATAATGTATTTGTAAATGCAG AAATAAGGCCATTATACAGCACAAAATAATTATTTCAAGCGCTGCATCCACCTGTGATTACATTTCTCTC ACTTTTTTAAAACAGTGTCTTGAATTTAGTTGATTTTGGATGTAAAACATCTCACAAATGCTGCAAGTGT TTGATTTTGCAAATCATATGAAGCGATTATGTCTAACTGTTCATAAGACATTTACTGAACTCAATGAGTG TTCCTCAATAACCCATTACATCATTGTAAACCAATAGAATTAAAGGATGCATAATCTTATCCAATAGCTG CTAAGTAGTGAAATACATGCAGTGGCTAGCAGTTCACTTGGTAAGAAACACTGAAGAAATGGATCAATAT TTGGAAAGCCATGTTGATTAAGTAATGCTGAGCCTCCTTAAAATATGCAAGTTGCCTATCAAATTGAGGA GGAAATGGCAAACATGTTTCGTTATACCAATTTTGAAAAAATTAACTTGTTCAGATGTTGGTTAATATTT TCTTGCTCAAATGAGTATTTCTAGGTTGTTATTTACATTAGAAATGTGGGTTTCTGTTGAATGCTTATTT TGGTGTGATCATGAGAGAATCTTGTAGTTCTGGTAAATTTGTATAGGTGATGAAGAGAGGTCGGAAATCT GTAGTTCGTGTGGAATGTAATTGTTTGTGAATATTGTAACATGGGAGACTATGGAAAGTGTTTATATTAA AAACTGTAGGATATTTCATGCAATTCATTGTTTATTTATTAAATGGCATGATTTTGCCATCTACCATATA AATGAGTTGATTGTGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds