Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038188462.1 PREDICTED: Patiria miniata integrin alpha-6-like (LOC119719140), transcript variant X1, mRNA AGGTCGTGACCTGACCTTGTCTGTGGAATTCGGATGAATAATACACAATGTATGTGCATTACATTTACTT TCGTTGAAAATGTGTGACACATCGCACTGATGCACTGATTTAGTCGCGGGTTTTTGTATTTTTAGGTAGG ATTTTCCAGTACTCTTCTTCACAATTTCACCAAGATGGGGACGATACGGCAACGAGGATGCCTGTGCTCC GCTCTTTTAGTTTTCGTAGGTCTACAGATTGTTAGAATTGAGTGCTCCAATTTAGAGATTCGGCTACCGA TCGTCAAGGAAGGGCCGCTTGACAGCGCGTTTGGGCTTTCCGTTGCCGAACACACAGTGACGAAAAGTCC GCCGTCACCCACCAATGGTTATGAAGGCAGTTTGGTCTTAGTCGGTGCGCCAACATACGAATCCCCCGAT GCTGTGGTACCAAAGACGGGGGCAGCCTTCAAATGCCCCCTCAGTACGTTCGTTGATGATTGCGAGGACT TGAAATTAGACGACGATGCGAATGATCCCAATGAGAATAAGACCGACCAGTGGCTGGGCGTGACAGTCAG AAGTCAGGGGCGTGGTGGCAAAGTAGCGATCTGTGCCCATCGCTACAAAACAGTGTCCTCGGAAGAGATC AGCGGTTTGGGCAAGTGCTTCCTGAGAAACGCCGATCTGACAGTGGACGACTTCCGCAGCGTTCCGTGGA AGATGTGCCGCAACATTGGGCTAGGCAAGAGCAAATATGGCTACTGCCAGGCCGGTACTGGGTTCTACAT CACACAGGAAGAGGATGGCGTAGAAGGTGAATACATCTCAGGAACACCAGGTGCGGGAGACTGGAGAGGG GGTGTCTTTGCAGCCAACATCGTCGATCCAGACACCCCGTTCTTTGACCAGAGTCGCACCAAGCTTGACG ACTCGACCGGTGTCGGTCTGAACAGCTACCTGGGCTTCTCGGTGACCTCGGGCAAGTTTGGTCCTAACTT TCTGATCGCATCCGGTGCCCCGAGATACAACGCCATCGGTGCCGTGGTCATGCTGAGCAAGCAAGATGGC ACGGACTTGACGATGCAGTCGATCATATATGGAGAACAGCTGGCAGAATCCTTCGGTTACGAGGTCTGCT CGGCTGATCTGGATGGGGATGGTTTTGACGATCTGATTGTTGGTGCACCTATCTACTATGACCGAAGCAC TGAGGCCGGGGGACGCGTGTACATCTACCTGAACAAACACCAGAACGGTTCCTTTTCATCCATAGAACCC ATTCGTCTGACGGGCCCCAGGGATTCCATGTTTGGCATCGCCATCACTAACCTAGGAGATCTCAATCTGG ATGGTTACGAGGATATCGCCATCGGCGCCCCCTATGAGAACGACGGTGAGGGCACTGTCTACATTTACCT AGGCGGCCCCGACGGCGTCGTGCAGCCAGCGTCACAGAAGATCTCTCCGTCCGATCTGCCCGCCGACCTG CCGAATACCAGGGAAATCGGGGGAGCGTTTGGTTATTCCCTGTCTGGGGGAATTGACTTGGATGGTAACG ACTACCCTGATCTTACTGTGGGCGCCTTTGAAGCTAACACTGTGGTTACTTTCAGAGCCCGGCCCATTGT TAACGTCACAGCAGAACTTCTCCTGGAGACGTCGGAGATAGATGCCAACGCCACAAACGCTGTGTACAAC GGCAAACCAACGTTTCGTTTTTATGTCCAAGCTCGAATGCAGTACACATGCAACTCATACAACTTTGATG CTCCAATAAAGGTGGAGTATTCCATTGAAGCTGAGGAGGTGAGACGGGCCTTGGGCCTGACCTCCCGTAT CATCTTTGAAGGGTCCAACTCCTACGCCATCCGGGACAAGTCCATGACTCTCAGACCACAGAGTGAAGAG GCACCCAAACGCTCACCCAAATACTATGCTGTACTCAGGCCGGGATTCAAGGACATCTTCCGCAAGATCC CGTTCAAACTGACCTACCAGCTGAAAGAGGTGGAGGTGGAGACCCCTGCCCCCGGCGACGACCTCCCTGA CATCAATGAGCTACCCATCCTAAACAGCCTGCATGATCCATCATATGTAGCTCAGCAAGGATCTTCAGCC AGCCAGTTCCAGCTTGATTTCACCAAGGCCTGTGCCCAAGACGACGGCAAATGCATCACTGATTTGGACT TGGACGCCTCTTTGAGACTCGATGGGATGCCCCCTATACTGCGCGTGGGTGAGCACAAGGATCTCAAACT GGACGTGGTGCTGACGAACAGAGAAGAGCCGGCGTATGATGCCAAGCTAATCATCATCTTCCCTGACATA CTCAGCTTCAATAAGATAGAGGACTCAGCCTCCCAGCGTATTCGCTACGGATGCAAGCCTCTGGAGAACA ACGACACAGTGATTAAGTGTGAGCTGGGCAACCCCTACCCAGAACTGCACACGGAGCGGTTTACCATCAA GTTTGATGCTAGCGATGTACCATCAGATGCTGATAACTTCACTATCACAATGGAAGCAACATCGACAAAC GAAGACAGTCACCCAGAGGACAACAACGCCACCCTCTTTGCTGAGGTGGAGAGTATTACAGACATCGAGA TCCTAGGTGAAACCAACGCAGTGCAGTACAGGTTTGGCGGTGACATTCGTGGGGAGAGTGCCATGGAGTT CACTGACGAGATTGGTGATGAGGTGATCCACACGTGGTCGGTCTTCAACAAAGGTCCAGGCATTGTGCCA GAGTCGGTGTTGACCATCAGCTTCCCTTACGAGGTGGCCAATGGCAAGTGGTTGTTGTACATGACCCACA AGCCCGTGGTCAGCAACGACAGAGGGCGTTGTGAGATTGACCCCATCTACATCAACGAGCTGAAGATCCA GGAGCGACCGAAGGGGCCATCTTACGAATCGCTCTCCACTGCTGCCCCAGCAAATGCAGAGGAACCACCG TCTAGTGCTGTAGTACCATCCACAGAAGCATCTGCCACAACCGGTGGGGGACGGAGGAAGAGACGGGCTG TAGAGGGTGGGGAACAGGTCGTCAGGCCTGAGAGAAGCAATGGAGGACAGGCACAGCCCCTGACTGAACA GAACGTCAGACTGGATTGTTGGAACAAGCGAGCCACCTGCTTTGAGTTCAAGTGTTACATCGATCGTCTT GGGGATGATGAGGCGGCGAAGATTATTGTCCGGTCCAGGCTGTGGAATGCCACCTTCCTGGAGGACTACA TCAATGCAGAGCAGGTCATGGTGGGCTCAGTGGGGAGGATTGAGATCATGAACGCTCCATTCCTGACGCA GTATAACTTTGACAATGATGAATTTAATTTGACCATGATTGTCAGGCCTAACATTCAGACCCTACCACCA CCGGAGCCCCTGGCCTGGTGGATCATACTTCTCGCCGTGCTAGGGGGCCTGCTCATTCTCATCCTACTGA TTCTCTTGCTGTGGAAGGTGGGATTTTTCCGTCGGCCGGGAACAAGATCGGGTGGTGGTGGTCCATGTGG TTTCTTTGAGAGGAAGACAATGGGCTACAATTACGCCTCCGTCACTCAGAAAACAGCGGGTGGAAAAGCC GCGACGGAAAAGACTGCATACTACGACGAGAAATACTTCACATAGATGCATCGATTATTACCAATTGAGG ATTTGTCATCATTTCAGTTGTGTGTAATAATAGCAAAGACAATATATGCAATGGTATAACTTGAGCATGC TTGCAAATAAATTTGGCTGTAAAAGATGCTGGTATTAGGGGTGGAGCTTAAATGAAAGTGTGGGAGGGGC AATCTGTTTTCTCAACAATGAGACTTTTGTATGTGCACAGTCTTACGATGGATGTGTAATTGTGCATTGA ATAATTGTGTGGTTGTGGGCATTGAGATATGTCAGCAGTGATCATGTGGGGAAGTTTTCTATGGTAATGA AAGTTTGGACCGAGTTTGGGGGACTTTGGATTGTCCCCGCAGTATTTTTGGTCCACACAATGCCTGTTCT TCCTCAGATGTGTGGTCCCCACAACTATGGAACAAGTGTTCTAAGAGTGATGGTTGTGCCAAGAACAAGT GTGTTACTTAATCAAGTAAAACTAAGTGATGTATTAACTGTTCCATTGTGTCCTACTGTAACTAAAAAAT CTGAAACTACTTCAACTTGATGCTAGCAGTTCAAGCGAACACCAACTGACAATTGGTTTTTTTGTCAACT AGGCATGCAAAAAATGCGAAGAGTAACATCTTACTTGCCTGTTCAAATGTTCATGACGGAAAGACAATCC TTTGCTTTTTTTGACAGGGTACAAGCTGCTTTTAAAAAATACCAATTTTTCCATTTTTACTCTTTTTTGT GTGTTAAAGACCACAGTACCTTTACAAATAAAGGATTAAAGAAATCATACCAACCCTCAATATGTTTTCT TTGAGAGAGAAAAAAGACCTTGAAAATGTGTTAAAAAAAAAAGAATTTGTTTAAAACTAGTATTTTTAAG TAAAGTCCAGGTAAGTCGTGTACATTGTACAATCATTTACAGTCAAAAGTTAATACTTATAAATGTAGAA TAACTTCATGGTCTTACATTAATTTTACAGAATCATGTTCAAATGTGCACACGTGTACATTTGACAAAAT GTCACTGTTCGGCATATCAAAGTGTGATAATGAGCCATTTCTCCACTTCCTTTAGTCCCACTGTCGTGCA ATTTCCTTTTTCTCTTTAGTCTTCCAAATTCTATCTCATGTCTTACCTAAAAGCATAAGAAACCAGGCCT GTTTGTTTATTGTATATAATTTATCATTGGTGCTGTTGTTTGCTTTGAATGCATGATGCAACAATTGTCC TGATTGCAAGGTTTATTAAGATGCACTGGTTCGATGCCAAACTTTCTGGCAAATTTAGTTTTTATTCATT TACTTGTGTCTCTTCTCTTGCTGGATCATACAGTTTAGTGTATAACTCGTATTCGTCCAATTAGTGCTTA ATATTGCACGTTCTTGGTATTTTTTAGGTGCACTTTATTACCAGAGATCGGAAAGTTTGTTTCAATTCCC TTTTCGACGTGGTTATAATATTGATGAGCAAAAAACCTTTTCCTATCGTTCAAGTAATGTATGTTTCTGC ATTATGGAAGGAAAAGTTTCAGATAATGGACTACATGTAGTGCTTCAAGCGATTGGAAATGCATATATCC AAGAAAGTTCATTTAATATAGAAGTTGGATATATTGGACATTTTTTATTAACCAAATCAGCCTTGCTTAA ATGTTTTGTATGCAGAATTTTTTTTCTAACATTAATGTATTCTTGTACGTCATAGCGGTACTATTGATAG TTGTAACAAATCCTTCCAGTGTATTTATAGTGTAAAGATATGCTTCCTATTGTTTTTTGTTTTTTTCAAT TTACAACTCAGTTATGTGTTTGTTTGTTGTTTGTTTTCATCATATCAATCATTACATAACATGACACGTT TTAATCTATTGTTATATAGGACTTCCAAGTTTTGGAAAGGCAGAAATAACCCGAGCGTCATACTCTACAC CTCGTGTTTGCCATATTACGCTGGTGATCTCCTGTCATTATACCTATCATTGGTGTTTGAACGATCCAAG TCATCTGACTTGATACTGGGTGACTTGTGATTGACTTGATTTACATCAATGTACTTGAAAGAAAGTTCGA GAATGTTCAATGAATCTTACAATGTCGCTTTAGTTTCTGACTACATCGACTAAACCAGCAGAACATTCGA TTTCGATCTCTAGTGAAACGCATTCACATTGTAATGCATTCACTGGCCTATGGGCCTATTCTCCCAAATG GTTCCTTAGGGAGACACTTTCTAGTAAATTATTTTACAGTAGGGAGACACTGGGGATTAGGTCGACATTA TGTCTTCCTCATATTTTAACTGCAATTTCTGCAAGGAATTTAACTGTCAAAAGTTGCTTCAAAGTTAGGT TGATTTTAGGTTGATTATAGTATAATTGAAAAGTTTGGAGTGGGGAGGGTATATTTGAAATGGGGTTATT GGAGGGTTTTTGGTTGTGTACAAGTCTATGGGAATTTCTCCCTGAGGTACCATTCGGTAATTATTATAGA CCTAAAATAACTATCTCTATAGTGTCACAGTACACGCTTATGCGATATTCATGTATGAATTTTGTAAACT ATTACATTTTTTAAATGCTTTGCAAGCCCAGGTACTGTATACATGTACATTTTATTTTTTATCCTTAATA TTTCTCGCTTCTTCTTTTTTTGAATAAGTGTTTTACATTTTCTGAAGAATCAATTACATAGAGAACATCG TTACACTTGTGTTATAAAAAGGAACTAAAAAGTTGCCTGCTATTTTTACTGTGTAGATGGTAAAAAGTTG GCCGAAGTGTTCGGTGTTTAAAACAAAATGAAGTACTATTTTGCCATTGTCTTATTGATCTTTGATTATT TTTCACCCTTATTGTAAAGAGTGAAGGAAAAAAAACACTCTTAAAGATTTGTCCACCATATGGGTTCATT TGAAAGAGTCGAAGCTTCACTGTTTTAGAGTATTTTTTTCCTCCATGGGCCAATAGTTGGTGAGGGGGAA ACACTCGAAAAGAGTGAAATTTCCACTCTTCCAAAGAGCCATATGGCGATTTGGGTCTTTTTCGTTTTAC TGTAAGAGAACCAGTAGTGTCAACTCTACTAATGTAAAAGACTGATTATGATGTATCTAGATTAAGTTAT TTATTACTAATTGCATGATTTTTCTAATGCGTGCTACCAATTTTACCAAGGAAAGTGTCTATTGGCTTCA GCTCGATTTTTTTAGCAGTAACTGTATCTACTGTTAGCTTGTGTCATCAGTACTGTATCAAAAGCTTGAC GTTTGTATTAACATTTTCATAGGTAACTTGACTAAAATGTAAATGTACTGTGTTTTTTTTGTATAGAGGA TCGCAGAAAATGTCTTTTTGAAATTGAAGTAGGTAATTTATGCGCTTAATGGTTTTGTAATCAGTGATGG CGTGAGAGATAAAACAAAAATGGTGAATTCAAGTGTTTTATGAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds