Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038188188.1 PREDICTED: Patiria miniata semaphorin-5A-like (LOC119718773), transcript variant X4, mRNA TAATACAAAACACACCACAAGTGGCCCATTGGAGGGGGGAAAAAGACATTTGATGCTTCGCAGAGTAAAA CAATCCATTAATTTCACCCATCACATGATAACAATCTGACATCCTTTCAAGCATGGAGGTGGAAAACATT TCCTAAATCAATGCTTCACTGGCCTCAACTGTGAAAAAAAAAAAAAAAAACTTTCCAAGTTTAACACTTC CCCTCCGAAAATATTGCAGCTCTCTCCACCAACCCCCTGAATGACTTTAGAACAGTCCGCACCTTGCAGT GACTTCAGCTAAGCCCCCTTACGTTCAGTCATGCGTGGACAGTGTAATATCCTACATCGCTTGTAGGCTG TCCAACAGCCGGGTAAAGCCAGCTCAATCTATCAGTGTACATGCCAGACGACCGTTCGGCCGTAACCACA TCAGGCAAGCCAATGAAGCCATGCCCATAGAATCCTGCCCACATAACACTGCTGAAAAAGCTGTCACCCA AACTTTGGCCAGCCAGTTAGCAGGGTCTATGATGTGGCGCGTTCTCTCTAGAGCGCTCTGTTGAGTCAGC TTGGATCTTGGAATCTGATGCACTGAATCCTAACACATGATCTTCATCTGTTTGATGATTCACTTTTTCT TTCTGCAAGGGAATTAGCTCTGTCTTTCTGCTTTTTTGTGACAGCTGTGTTATAAACTCTCTCTTGTGAC TTGCACAAGTGCGAGTCGACTGTGAGGATTGTAATTGTATGAAGAGGTCTCGTCGACATCAGATTTGTCC CGAGTTCATCAGTGGATGTATAATTCCAGTTCTTCCATATTGGAAAAGAGACAACCAAGTGGACAGTCTG GAGAACATCTGCCAGACTTACATCAAGAAGAATTTAGTCTTACCTTGTGGAATTATAACAGTCTATTGGA GATAAAGTGTCCAAAAGTTTCAGATAACAAAAGCTAGGAGATGCTGTGCAACATTTGAAGGAAATCGTCA AAGGAAAAAAAATAAACCAACAATTTTCTGAAGAGAATTGGACAAAATCTGTGAAGGAACGCCGGAACTT ACACAACACTTTTGCGTCAAGAGTCACACCCGGACGAATCGCATTCAGCGTAATTGGACACAACATGGCA GCCAAACTTGCATTTCTGGGACTTTTTGTCGTCGCCGTGGTGAGCGCAATGGACCATGACAGCTGCTTCC AACCTGTCACACGCATCATCAAACATCAAGAGTTACTCAAGTCGAACCTGCACGTTTTTAGCGTGGAGGG CATCACGGATTATTCTCAGTTGGTCGTCGACAAGAGGTCCCACGAACTACTCGTTGGCGCCAGAGATTTG CTGGTGAGATTAAACCTGGATGATCTGTCCATAATTGAGTCCACAGAATGGAGGCCTCGGATGCAAGACA TAGACAGATGTCAGAGAAAGGGTGAATCCTTGGAAAAGTGTTGTAACTACATCCGGGTCCTGTTGCTGCA AGGGGAGCGAGTCTTTGCTTGTGGAACCAACGCTTTCTCACCGACGTGCACATGGCGACAGAAATCCAAC CTGACCCTTGTCGAGGAGAGTGTGACGGGCATTGCGCGCTGCCCTTACGACCCCAGCAGCAACACCACGG CGCTCTTTACGCAAGACGGCGACCTGTACAGCGCCACCGTTATGGACTTCACGGCCCGCGATCCCGTACT GTACCGCACGCTGGGGAGCTCGCGCCCGCTGCGGACTGCTCAGCTCAACTCCAAGTGGTTGAATGAGCCA AACTTCATTTCTTCATATGAGATTGGGCCGTGGGTCTACTTTTTCTTCCGAGAGAGGGCCGTGGAATTTT CAAATTGTGGCAAGGTGGTCTACTCCAGAGTTGCTCGTGTATGCAAGAACGACTCCGGAGGACAGTTTTT ATTGGAGGACAACTGGACGACTTTTATGAAGGCTCGCATCACATGCACCATCCCAGGAGAATATCCATTT CACTTCAACGAGCTCCAGTCCACCTTTTACGAGGAGTCAACTCAGACCATCTACGGGGTCTTCACCACCC CGAGCGGTGTGGCCCACGCCTCGGCCGTGTGCGCCTTCAGTCTGGCCCACATTGAGGCTTCCTTCCAGGG CCCGTTCAAATACCAACAGAACTCGCGCTCGGCCTGGACGAACCAGATCAACTCCAATCCTCATTTCAAT TGCAACATGCAGCAGAGTCGGAATCTTCAAGACGCTCAGAAGTACCAGCTGATGGCCGGTGAGGTGGTCC CATCCAACCGAGTGCCTCTGTTCGTGTCCAAGCCGCAAAAACCACAGCTTGATCGCATCGTCGTGGACAT AGTTGAAGGCAAATATGAGACATACCATGTGATGTTCCTTGGAACAGAAGACGGCAAGATCACTAAGGTA GTCAGGTTACCGGGTACGGACACGTCTTGCGAGATTGAGATCCTGTGTGTTACGCCTAATCGACAGTGCC AACCACTGAAAAGGATTGAGCTTCACTCAGAGATGGGCGCCCTCTATGTAGGGATGTCGTTCGGTGTCGT GATGGTGTCGGTACAACGGTGTCACATGTACACCACAATGAAGGAATGTGTGGAGGCCAGAGATCCCTAC TGCGGCTGGAACACACAAACTGACGCCTGCACGACAAGACCACAAGATAAGGACACCTTGGACCTTTGGA TACAGGAAATTACAGCGTGTCCGGTCGTCAACAGAGCAGTTGACGGCGACTACGGCAGCTGGTCCGACTG GTTCCCGTGCCACGATCCCACCGGTGACTCCAAGTGCCAGTGTCGCCGTCGCGTCTGCGACACGCCGGCC CCCAAGTGCGGGGGCTTACCGTGCCAGGGGGAGAGTATCCAGGTCTCAAACTGTTCAGGTACAGCCGTTG TCGTGAGAAATTCAGGATCATGGAGTGAATGGAGTGCATGGAGCGTCTGCTCGGCCAAGTGTAACGGAGG CATCCAGACACGGTCAAGACACTGCCTAGGGGGCAGCGTCTGCATGGGCACGCCCGAAGAGTCAAGAGAG TGCAACAAACAACTCTGCAGAGAGACTCGCAAGACCACCCGCTGGACCCCCTGGATGATCCAGAATGCCA CCCAGGACAGCTTCCTCCTCAAGCGCTACCGGTTCCTGTGCAAGGCGCCGGTGATCGACCGGTCCCTGCT GCGCATCGGCCGCATGAAGGTGGAGTACCAGCTCTGTCCGTACCTCAGCAAGACTTGCTGGCCGACCGGA GGATCGTTTGGAGGCTGGACGGTATGGTCGCCGTGGTTACCGTGCAGCGTCACCTGCGGTAGCGGCGGGA CTCAGCAGCGTCACCGGTCCTGTTTCCCTGGTAACACGCAGTGCACCGGTGAATCCTACCAACATCAGAG CTGCTCGGGCTACACCGAGTGCCCAGTGGACGGTGGTTGGAGCTGTTGGAGCGAGTGGTCAGACTGCAGC GAGTCTTGCGGTGAAGGGTTGCATCAACGGACGCGGACCTGTACCAACCCTATCCCCGCCCACGGAGGCA GGGAATGCGAGGGCCCAGAGACAGTCACCGAGATGTGCTCCGTGTCCGAATGCCCGGATTTTGACAGTCT GATGTTACTCGCAGGTTCGTCTGGAGAGCAGAGCTCCGTCCCTAGCTCCAGTCGCATGTACCACATGTCG GGTTGGAAGGACTGGAGTCGCTGGACGCAGTGCACCAAGCCCAATCAGCTTCACAGACATCGCAGTCGTC GCTGCTTAGTGGATGAACCCACAGCCGGGCAGTGCATCGGCTGCATCAAGGAGCTTAAGCTGTGCGATTC ACCAGAGAAAGAACCGTTCCCGTACGCCATCCCCGAGGTCCAGCGGTTACAGTCGCAGCCCGAGCTGGCC TGCTCGCAGCAGTCGGCCCAGCCGGGCGCCGGGGTCAGCCCGACGCTCATCCTCATCATTGCTCTGTGCT CGGCGCTGATCGGCGCCGTCTCCTCGGTGGGTGTCTACCGCTCCTGGCTCAAGGGTTGCCAAGCCAAGAA GAGACGCAGCTCCGACAACCGAGACCAGTTCTCCGACCGGTTTTCAGATAATGACGACGACGATTACGAC TGCCAGCATCCCAGCGCATTCAGACATTACAAAACTGAGATTCGGAGCAATCCTATCCCGAGCTGAATGC TCGTGTACGGATGAGCCATGCAACTGCTTTTTGTACAGACTCTTCATAGACGCCTTTTTTTAACTTTTTC TTTTTTTACCAATGCTGCGTTTTGTACATATAATGATGCAGTGATACATACGCAGAAAAGTGCACAAGCT TCGCACAATGAGTGGGCAAGATTGCTTCAAAGCTACAGCTTGGCAGATGAGACAAGAACGCTTTGTCTTC ACGTTTCTTTTCTTAGTTCTCCTGCACTGATCTTGATGGTAACCAAATATAATATGTCTATTCATTACCC ACCAGAAGAAACCAGTGGCGGATCCTTCTGGATCTGCAACTTGAAACCAACTCTAGTTAATATTATGTGA AATAATTTGACATTTCATAAAAATATAAAAAAATTCAACTTTTAAAAAACCTACATATCTTTTTGTTATC CTTGTATATTATCTAAATAAAATCCATAGAAGCAAGATTATAGTCCAGTTGCCAAATTTAGGCCTCGCTA AACCCTTTTCATTTTCAATTCCGGTTTCGCCAACTGTACCTGCAACTTGCCGTTTTAAAATTGGCTAACA AGCACATGCAGGCTTGTACTTAACCAAAACCTAGTAATATTACTTTGGTTACAGTGCCTTAAACGGTTTA ACCAACTGGATCAATCAACTTAAGTTTATGTTTTTTGAGTTGCAGATTAAGGTATATTATTTGCAGCTTG GTGTAAGAAACGCAGTATTTGATGTCCATTGTATAAAGACCCCTATATTTATCAAATCGTAATATTTTGA CTTATTTTTTGTGTGAACATTACCCACCGGTCATATGATATTGTTAGATTAAATTACCCATGTAACCAAA ACAAAAACAATACCTGCTGTGTATATGAAAGTATTCATGTTATCATGTCGTCTTGTAATAATTTATAAGC TGTAAATATTATGCTGTGAATCAGCCCTGTGGATGCACAGTCACAAAATTAGTTTTTTCCTGCACAAAAA AAGAGAGAAAGACAAATCAAATTGATGAGTTCTATTGGTAAATGCCATATGTTTGGTGTTTATTCACAGG ATTTTGCAGCAGCTGCACAGCAGTTTAAAATGCACACTTTGTATAACACCCCCAAAAGAAGATCGATGTC TGTTGACAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds