Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110013.1 TSA: Strongylocentrotus purpuratus WHL22.321925.0 mRNA sequence TATAGCCCTTGCATTGAGCTTTGTACACAGACTTCAATATGCCTGGTTTGGCTCATTCAACGAACAAGTA AAATAATGGTGATCTTGTAAGGGAAAAGCATATTTCGTGCTCCGATGAATGGTCGTGGGCATCAGATATC AACCTTGCATAAAAGCACCGAAAAAATGTATTTAGCTGACGACTGTGAGCAGTTAATTTGAAACGTAAAC ATAAGCAGAATCACCTATTCTTGGCAGCTTAGCTGAGCAGCAATGCAATGCAATGCATGATGTTTTCTTC CCTGACAAGTTGAAGTTCAATTCAACGTGAGCCCAGCCAGATCCAGAGCCCCAGTTGTTGATCAAGCAAG TAATTTACCTTGGAAGAGTGGAATAGATCTAGATGTAATCAACAGCACCATGAATAGGCAGACGTCATTA TATTAAAAATCGTCCAACGTGCATGATGAGGCAGAAGTGACTAGGTTTTTACCATTTTTAAGTTTTGGGA GAAGTGACTAGATCTATCTGTAGTCAAGATTTGAACAAAGAGAGTTGAAGTGAAGACAAAATTAAGGAAA AGAGCATTTTAATACGACTAATAAATATTAGTCCATCAGTTTTTTTCATAAATTGTGAGCAGCAGAGCGT GAAAATCCTGTTTCTTCCTTTGCCTTTGGCTTTGGCTTTGTTTGACCGTGTTTGAAAACAACCAGTGCAA GTTCGTGAAGATGGAGGAGGATGAGGGATTTATGATGGGAGAAGAAGACGAGCTTGGATTTGATGATGAT GATGATGATGCAGGATCAAGTGACTTTGGAGACCATTTTGAGATGGAGGAGGACGACGGTTCATACAGTC GAGATCGAGAGGATATCGACGATTTCCAGTATCAAGTGTTAACTCCGGACGATATTGTGCAATTAATGGT TGATACAATACGTGAAGTCAACAATGTTGTAAAGATTCCAGCAACTGTGACAAGGATACTTCTAAACCAC TTCAAATGGGACAAGGAGAAGTTAATGGAGCGGCTATATGGTGGCGACCCTGATGCAGTCTTTACAGAGG CACATGTCATCAGCCCATATAGGAAAAACTACGCAAAACAACCAAAGGTTAACACAAGGTCATCAGTTGC TGTGACAGAGTACTGTGAAATCTGCTTCAGAACTGTTCTAGGATCATCGATGACAGGTATTGAGTGCAAC CATAAATTCTGTGCAGATTGCTGGACAGAGTATCTTACAACCAAGATCATGGAGGAAGGCATGGGCCAGA CTATAACCTGTGCAGCTCATGGATGCGATATCCTTGTAGATGACATCACTGTTATGAAATTAGTGAAAGA GTCGAAAGTGAAACTGAAGTATCAGCACCTGATAACCAACAGCTTTGTGGAGTGCAATCGTTTGATGAGA TGGTGCCCCGCCCCAGACTGCCCTAATGCATTCAAAGCTAACCACATAGAACCCCACCCTGTTACCTGTA TCTGTGCACATACATGCTGCTTTGTCTGTGGTGAGAACTGGCATGACCCTGTCAAGTGTTCGTGGCTCAA GAAATGGATCAAGAAATGTGATGATGACAGTGAGACTTCAAACTGGATTGCAGCTAACACCAAAGAATGT CCCAAGTGTCATGTGACCATAGAGAAGGACGGCGGATGCAATCACATGGTTTGTCGCAACCAGAACTGCA AGGCCGACTTCAGTTGGGTGTGTCTAGGACCGTGGGAACCCCATGGATCATCATGGTACAACTGCAATAG GTATGATGAAGATGATGCAAGGAAAGCAAGAAACAACCAAGCACGATCGAGGCAGGCCCTAGAGAGGTAC CTGTTCTATTGCAACCGTTACATGAATCACATGCAAAGTTTACGATTTGAGAATAAGCTTTACGCCCAGA TAAAGCGCAAGATGGAGGAGATGCAGCAGCATAACATGTCATGGATTGAGGTCCAGTTCTTGAAGAAGGC TGTAGATGTCCTGTGCCAATGTCGCAGTACCCTCATGTACACTTATGTATTTGCATTCTACCTCAAAAAG AACAACCAGTCCCTTATATTTGAGGAGAATCAGAAGGACTTGGAGAATGCAACAGAGACTTTATCAGAGT ACCTAGAAAGAGATATCACCTCGGATGCCCTGGCAGAAATCAAGCAGAAAGTACAAGATAAATCAAGGTA CTGTGAGAGCAGAAGAAAGGTGGCACTAGAACATGTCCATGAAGGATATGAGAAGGATCTCTGGGAGTAT TACGATGATTGAATACCGGTAGCAGCCAGAGTAGCATCTAGGAAGTGACTATTTTATCCATTGTAGGAGG ATTAAGAGAAACGTTAATGACTTCCATCTTTACTTTCCAAAAAACTTGTTTGTTATGTGCATCTTATTAG CATAAGGAGAAAGTTCAAATGTTTTTCTTCATGTATCTGTAACGTTGCGTTTGTTCGTTTCATCCCCCTG CCAAGTCATCTATTTGCATTTCTGCTTTCATATATTACTCATAAAAGGAACTATTAGGATTCTACCGTAT TTGCCGGCGTAAAGGCCACAGTATTTTTGGAAGAGAAAATATCAAAAAGTCGGGGTGCGGCCTTTACGAC GAAACAGACAAAAAAAAAAAAAAAGTCAAAACCAGCCCGAATTTGTACATATGGGACTAGATCTACGAAG GGTCCAATAACTATACATTTCCACACATCTTATCGACAATTTTATCTTGCATTGTTGACATGAAGACGAA AATAAACTTCCAAAAACAACATCTGCCGATAGATTTTGATCCAAGTTCGTGCCAATTTATTGCAAAAGTA AAAGAAGGGCCCGTTTAACGGAGCCGCCGCGAAGCATCCAGCACGCGAAGTCACCATTTTCAATCCATTT CAATGACTACATCACATAAAACGGCAGTGTATGGTATCAGCGCGGGATGGCCGCGTGGTTTAAGGCGGTG ATTTTAGTCACATCAACATTTGTACGCAAGAGATCGAATCCCGACTTTGGCCAAAAAAAAAATGTCAAAA TCGGGGGTGCGGCCTATACGGCGCTGCGGCCTTATCGCCGGCAAATACGGTATGCGCACATGAAATGACT TTCCTCGCAATGTACAAGAAGGAAAAATAAAAAATTGGAAGAAAAAGCGAAAAAGAGCAATAATTTTGTG TCCCATTAACATTTTTTCATGCTGACTAGTAGGTTATTACTCCTGGCCTACTGTAATCAATACCATGCTC TTACAAACAAAAATATTTCCAATATTTCCCAACCATATCCGGACAGTTATAGGGTTGTTTGTCACAGTTT TTGAAGAAAAAAAAAGACTGAAGGTTCCATTGCAGTGTTATTGTGTGAACTGCGGTTATGGATAATGAGG GATGAAAGAGCTGCTAATGTTGGGTAGCAGGTGCTTTTATTATAATGAACTATGTGATGGTACTGCCTGT AATCTATTCCCAGTGTTCACATTTCCAAAAGAATCACCAAATCAGTGAGAAAAGAAAAATGAAGTATTGC ATTCATTGGGTGATATTATAGATAATAATACCTTGCTTTTGTATCTGCATTATACCATTATGATAAAATC GCCCCTCTGCACTTCCAAAGGGTTTGCAAAAGAATCAAGTATTGCCAAAGTACTTGAATTTAATTGCAGT AAGATCAAATACAAATTTAGTGAAAAGTATGTTACTAGAAGTAGAGATACAAAGCCTGTAGTGAATACTC CCACTTCTTAACCACAGTAATATTAACAGGTTTCTTTAAATGTATGGCTGATACAAAATTTGAAGTGACC TGCATACCTTTGGTGAAAGAAGAGTGGATCACTTGATGAGAGTACTGGTATAAAATTTCAGTTTGCATTG TCTTTACCGAATGAGTTAAGTGGTGGTAGTAGCTAAGAATTGAACACGTTTTGTGATGAAGTAATGATTT GAAGGAAAATATGGATGAAACCTGATATTATATTCTGTATAATAGCTTCAAGCTCCAAGGCAAGGCAAGT TTTAGAAGCATGATTACTGGTATGGCAATTCATCATAGAGCCAGTCATTCATTCTGTGTAAAGAACAGAG CTTACAGGTATCAGTATAGCAGCCAGATCTGATTATGTACATCTGAGGACCGACATTTAATGTCACCTAA AAGACCCAATTGGAGATTGAACCTTGGGTTGGTCTATCGGCATACTAGAGAGTCAACCATTAGACCAAGT CACATCTTGATGTGAAACAATGCCTCACATCAAGGATGGAAGATAAAGATTTGAGGCGTTTGTAATGGTT CATCTATTATTGTAGCATTTTCAAAGGAACGTGTCCATGTTCCACTAAAAAAAAAATAGGGAAAGATCAA AGTTGTCCCATCAGACATAATCACAGCACATACCGCTGTCTTGAGAGTGTATTCTGGTCAGTCAATGTTG CCTGCAGTAGATTCAGCAGTCTATTGTACATTCCTGGGCATGATACTTGCTGCATCTTTTCTACAATATC CATTGTCAAGATGTATGCATTGCATGCAGAAGTTGGCATTGATTCTGCATTGTATTTTACATCAGTGATA TGAGAAGCTTTGTGAAGATGGTATTATTATTATGGAAAGAGTAAGGTAATGTACCCATTTAGCTTCAAAT GATATTGTTCTTTACTTTAATATTACATTTAATTATTTACATTGGAAGGGGACTAAAAGAAGTCCAGTTT TTAAATTGTTTGTACTTTATAGGATGTGCTAAAAAAACACACCAATTATTACATTTTCTGGAACAGGGGA CTAATATATTTGTTTGCTTATTTTAATTTATGATTTATGTTGTTTCTTTATTAATGATTTTTATTGGCTG GTATTTTAACATATAGCTAAAGAGATACACTGTATAGAGAATGTTTTATTAACCAATCTCAATCTTATTC TTTTCCCCTTGAAGGTAAACTTGCACATTATCAAGATATAAGATTTGTAGCATGCGAAATATGGAGGAAT GACTCTCCAATTCTCTCCATTAAAGACATCTCTATGCAGTCAACTTGTAGTCTTCAACCTCAGTCGAGAT TGAGAGGGTTAAAGCATCTGTACAAAGTTATGATATGAAGTTATGAACAATGAAATGGTATGAAAGAACG ATAGAGAAGAGACGATGTAATGTATTGCGCATATTATGATGCTCTGATGTTTCTCAAGCACCTGAATGTA GTAGAATCGACCTGCAACTTCTGTCGGATATGAAAGGAGCATAGCAGTTTTAGAACCAGAATATTCCTAG TATGTATATGCCGTTGTTTGAGCATCTAGATGTACAGATGTATTGATGAAGACTTGTTCACACAAAAGAC TGTAAACCAGCTTTTAAAAATGCTGCAGCAAAGTGAAAACTGTTCAATGAATGGCAAGCAAGAGTGAAAA ATCAGTAACTTGGGGAAACAGGCCTCTAAGCGTACTCATTATCTGTGTGTTGACAAGATACCGAAATGTG AAGGGTACTATACATATGTCATTTTATTTTGCAGCAGGATTTTTATGAGGTGGTTTAGCGAGTCTGGTGT GAATGAGACTTCCAGCTGTTACTGCCTCTTCATCCCAGAGTTTGGATGTGACTGCAAGTCATCGGAAGTT TGCGTTGTTCCCCCATCTGTACTGTGGGTTTTTGTATTCTATCTGTGTTGCAATATTTAGGGGGAAACCA GCTCTTGTAGTGTTGTAGCATCAGAAGTAGTTTGTAAATTTGGTCATGGGAAAAGCTTCTCTTTCTCCCT CTCTCTCTCTCTCTTTCTCTCTTACTCTCTCTTTCTCTCTTACACACTCTCTCTCTCTCTCTCTCTTTCT CTTACACACTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTTTCTCTCTTCTGTTCCATTCCATCTTTCTC TTTTTCATATCATCACTTTAATCCTTCTCTTCTGTTAGCATGTAATCATCTCTCATTCCTATTTCATCCT TATCTTTATCTTTCCTTGTTTTTATCAAAACTTGATTCACTTCCATCATTTGTTTTCTTTAATAGTCTCT GATCTTTCTCCTATAGATCACTCTGGGACAAATATAGTCATCTAACTTTTGCATGCATACGTATTTCTTG TATGTATTATTGTGAAATCTTCGAATTTAGATTTCATACATATATGACCTTCAAGTATGCTTGGATTTTT TGTTTTGTTTTATTCTTTTTGTCTATATACATCAATTCAGCTTTGCAACAAAACTTAGATTAGTGTAGTC GTAGCTAGATCTGGAATAGAACTGAAAATTAAAGCCAGATTAAAACAAGAAGTTAAGAAATAGATGCCTA ATAGACGCAGACTCCAGTGTCTGCAAAAAAATCATATGTGTGTGCTAGATTGAAAGCATGTAGTTCAAAT AGAATACTCTTTACTCTACTCAATAATACCACAATGAGTAGTCAAACTGTTGTGGTGGTTCTAACCATAT ATAAGTGACAAAGGGAAAAGATGTATAAAGTTTGTACAAACACTGTATGTCTATTTAAATGTTTTTGGGG GAATCTAGTGTTATACAAGACGGGAGATGAGTGTGAATGAAAAGAGTTTGAATTAATTTTATGTTTGCAT GTCGGGATGCGAGAGTTGAACATTTTTATACTGTGTAATGGAAAAATGCAGGACACATACAGTCACAGAA TCCAGACACTATGTATGGTGCAGTAACAATATGTGCGAACCAATTGACACATACATGTGTGTAGAATTGA TATTGTATATGCTATGATAAATCAACATGGGCAAGTCATTCATATCTAGTGAAGTTGCAGTCTTTAAACT ATTTTGATCTGTAGTTTTTTTTTGCACGCTGGTTGTGCTCGAGATTTATATTCCTGTGAATTACATAAAA CCTAGAAAAATGATGACATTCCATCATTGTAAGTTCACCAGTAGGAGTAGATCTATATGTTAATTGTCTT TAAAAACCTTTATATGAATTCTGCTCGTTCAAAAAAAGTCAACAATCTGATATATTATCCTCTATATTCT CAAAAGAAATTGGAACTACAACAAAAACATACTGCATTAGACTTGATTCCCAAGTCACAACAATATGGAA CATGAAAAAAAAAAGGAAGTTAATTAGAAAAGCGATGATTTAGTGCGTTCAAAGCAATCAGAATTGTAAA GATTGGGTGAATTGAGAGCAGTTTCCTCCAAGCAGTCCAGATAACTTAAGGTGGAATTTAATTTCTACCA CAAAGAGAGGAGCTCTGACAAAACATGAACCAAATGAGTGCACTAAAGGTTTAGGGTTAGGGTTGGGCTA TAAGTAGTGCTTATCATAAATATCTGGACTAGATAATGCTTTTTAATTTGCTTCTTATCTCTTCCTAAGG TCAAAGTTCAATAATCCAGAAGATGTGCGTACCTTCAGGTAGCCAAATATTTTCTTGATAAAACACTGAT ATAAACTCTACCAAATTTTAGCTCCATTGAAGAATATCCTAAGCCCAAACTCATATGATTTAGGCTTTCA AGGTCTCTGATACTTTAAGGACTGCAACTTCACATGCAAATTTAATTTGTAATTGAAAAACTAAAAAAGA GTCGAGTGTGTGTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds