Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030976326.1 PREDICTED: Strongylocentrotus purpuratus non-lysosomal glucosylceramidase-like (LOC575065), transcript variant X2, mRNA GAGAGAGAGAGAGAGAGAGAGCTTGAAGATATGAGTCACAATGACACAAAAGGAAAGAGATAGAGAAAGA CAGAGAGAAGTAGAAAGATTTAGAGATTGCTGGAGAGAGGAGCAGCAGAGAAAATGAGATTGTGGCAACC ATGAATCCAATTGTCATTTCCTGGATGATATCGTATTCCACTAGTCTGATAATAGTCCACATAGTCTTAT CTAATGAGAAGTTGCCTTCTTACGAGGTCTTCTTCGCTTTGCCAAGTAAAATACAAAACAAAGAAATACT GGCCTAGCTTTCCTCAGCTGCGTGCCTTCCTTTGCAGCCTTCTTCAGGCACTTCTTATGCAAACGCAGAG CACGATGAGTACAGCCGTTTTATGAGGCTCCACAATAGCCTCGTTATCATTAAGTTATCAACTCTATCAT GAGCACAGTGGGATCCACCCAGCTAGTTACACATTGACTAAAAGATCTTGCTATTATCAAAGTGCAAAAT CAGTATCTCGCTAGCTGATGAGTGAGTGGGGAAACGTATTCCAGTCTCCACCAGGATTGAGTAACTAGAT AGATGCTCATTGATTTGTCCATGTGCTAGCTGTACAGTGCTTCAGATCATTTAGCTACATGTACTTCTGC TACAAGGAATTTACATTTGAAGGAATTAAAGAACATGCTGTTGAGTACACGTACTTGAGCATTGGAAAAA GCAGGATATGGCTGACTAAGGATCGAGCACAGCACATACACGCTTTTGGAGCACATCAATGATTCTCTGT GCATACATGATTACAAGTTGACAAAGGTGTACAATGTTATCTTTAATGGTGTGAGTGAAACACAGATAAA GGAAGAGCGTCACAGAATTTCCTCTTCTCCTTTCCTGGTATAATTAGGCTTTTCAAAATGGCTGCTGCCA TTGATGATGTCACGGTAGACAAGGACTGCTCAGAAAATGACGAGGACCAAATTGAGGACCAAATTGAGGA GCAAATTGAGGACCAAGTTGAGGAGAAAAGTGAGGGAAACAAGAACCAGGGCTCGGAGCTCAATGGCATC GAATGTGAAGTGGACCACCTGAACATAGCCAGTAACAATTCAGCGCATGGGGACAGTTTGAATTCGAGGA ACACTGGAAAGAATGATAACCTGGCTCAGTTTGGCATCCCTCAGTACTGCTGGACTGTACAGCTTAATCA TAAATTCAGTGAGAAATGGCGGCCACTGACCATGGTCAGACCGCATCAGATCAAGAGCTTTGTTCTACCG TCTGTCAGATACGCCCAAATGCACTTGAAGATGTGGCGCGGAGGAAAGAGGCCTTTCATTGATGTGTTAC ATCCTATGAAATTCAAACCCGTATATGGTGTACCGGTGGGTGGTATCGGGTGTGGTGCAATAGATAGAGG CTGGAAAGGGGACTTCTGTAGATGGTCTTTATCTCCAGGACGATACACTTATGATAATGTGGAATTAAAT CAGTTTACGGTGTGTGTGAGGCGAGGGGGTAAGACAGTCTACCAGCAGGTCCTGTCGCCGAACAAACCCC ATAACAAGGACCTAGCCCAGGCCTGGGAATGGCAGTTTCCTGGTAACAGAGCGTCCTATCATGGTCTCTA CCCCAGGGCCTGGACCAAGTACCTCCTACCGGGGCAAAATATCACCCTCGTTTGTCGACAGATCTCACCA GTCTTTCCTCACAACTATCAGGAGACTTCACTACCTGTGGGTGTCTTTGTATGGGATGTGTACAACCATG GCACTGCTGCTGCAGACGTCTCTATCATGTTCACATGGAAGAATGGCACAGGCACTTCTGCTGATAAGAA GGGAGGGAGGTGGAACACGGGGTTCTCTTCAGCCTCAACCTCAGGGGTGATGTTCCATGACGGACACCCT ACACAACCATGTACTATGTGTATAGCAGCAGCTGATGGGGATGATGTCACCGTGACAACATGTGCATCAT TTAATCCTTCATCTCAACTGAAAGAGCTTTGGAATGATCTCAAAGAAGATGGTCAACTCAACACAACAAA AGGACCTACTGAGCGTACAGAGAAGGGTGAAACCTTAGCAGGTGCTGTAGTATCATCACGCCACATAGAA CCCAATCAACAAGGTCTCCTAGAGTTTGCTCTCTCGTGGGACATGCCCAAGGTTCAATTTGACAGCTGCT CGTACTTCAGGAGATACACAAGATGGTTTGGTCGAGACGGGGACTCAGCACTGGCCTTGTGTAGTCATGC ATTGGAGGAGTACGGAGATTGGGAAAAGAATATCAATGAATGGCAGAACCCTGTCCTTGAGAATGATCGG TTACCTGCGTGGTACAAGTCCGCTCTCTTCAATGAACTGTACTTCATGACGGATGGTGGAGGGATATGGG TTGATGTCGACGAGGAGTATCCCAATGGTGAAAACAATGCCCACACGAGAGCGTCCTCTCTCGTCAGAGA GTATGGCAGATTTGGGTACTTAGAAGGTCATGAGTACAGGATGTATAATACCTATGATGTTCACTTCTAT GCGTCCTTTGCTCTCATCATGCTGTGGCCCAAGCTAGAGCTGTCCATGCAATATGATTTTGGTCAATATG TAGACCATAAAGATGAGGATAGTTTCCAGGATCTATCATCAGGATTGAGATCCATCAGGAAGAGTGCTGG ATGTGTACCTCATGACTCAGGAAACCCGGAGGAAGATCCTTGGTTGAAGCTGAATTGCTACTGGTTCCAC GACACGGCCGAATGGAAGGACCTGAACCTCAAGATGGTCCTAATGGTATACAGGGACTACTTTGCTACCA AGGATAGGGAGTTCCTGGACTTCATGTGGCCCAAATGCATGACTGTGATGGCTAAAGCTAACAGTCAAGA CAAGGATGGTGATGGATTGATTGATCATTTCGGAACAGCTGATCAGACGTATGATGTATGGACAGCTAAG GGATGCAGTGCGTATTGTGGAGGCCTGTACCTGGCAGCTCTGAAGTGCATGTGTGAGATGGCTGACCTAC TAGGGGATGACAAAGCCAAGCGACAATACTCAGAGATACTACAGAGAGGAAAGGCCACGTATGAGAAGAA GCTCTGGAATGGTCGATACTTCAACTACGACAGCAGTGACCAGAGTTACCACGACAGCATCATGGCTGAC CAGACCTGCGGTCACTGGTACCTACGGGCCTGTGACCTGGTCCCAGAGCGGGACCAGGTCTTCCAGGTAG ACCATGTCAGGTCAGCGCTACGGACCATCTTCGATATGAACGTGATGGGGGTCAAGGAGGGTAACTTTGG GGCTATGAACGGGATCAGACCCAGCGGCAAGCCAGACCATACCAGTCTACAAGGGGAGGAGGTGTGGGTC GGGACTACCTATGGTCTCGCTGGCAATATGATTCAAGAGGGTATGTGGGAGGAAGGATTCCGGACCGCCA AGGGATGCTACACGACGTGCTATGAGCAAGCCGGTCTGGCCTACCAGGTCCCTGAAGCTTACATGTCCAA GAAGATCTACCGATCCCTAGGTTACATGAGACCCCTGGCCATCTGGGCCATGCAGTGGGCTGTGGAGAAA CGACAACAGCAAGAACAAGAACAAGCTCCAAGCAGCTAAGGGTGCGGTCAAGCGATTTTTGAAGCTAGAA TCACAAACATGAATCACAAATCAAAATGCCGTTAAAAAACATGGTTACTATGGGAGAGCGTTCAAGCAAT TTTTCATCCACTCTGATTCTTGCTCATTTCAAGCTCAGCCACTGCTCATCACACTGTGCAGTTTGACCCT GGAAGTATAGGTCAACTTCGCCGCGTGCTTTCTGTCTGTGTTTACGGTCGACTGTCGGTCAAACCGGAAG CAGGCAACGATAATGGCGTTATAGAATCATGATTGAGATCTCTGTTCGTTCAAGCGAATTTTAGGGACCG TGATTCTGCAGAATCATGATACAAAACGCATCTTTTTCAGCATTTCATTTTTTTGTTTTTAAACACGTTT AGTTTGACGACCGACAAAAAATTGCTTGAATGCAACCGTGTTTTAAACTAAACGTCTTTGAAAACCGTGA TTCTAGGATGAAAAAGTGTTGATTGAACTTAAAGTCTAACCAAACCTTCTACAGTGAAACCTAGCAACAA CCTGTGTAGAAAGACCATCTGTCTATAAAGACCATATTGTTTTGTTTCTCTTAAATAATGGTTCTCATTC AATCGGGTATTAAAGGAACCTGTTCATAAAGAGCATCTGTCGATAAAGACTGCTTTTCTTGCTTCCCTTG AGCAGTCTTTATAGACAGGTTTTACTGTGTTTATACATGTAGTGGCTACCTGTTATCAGAGACTTGTATA CCAGTTATTCCTTAGAGTGTTTTAACAACAGGTTTAGCTGCGGTCTTTATAGACAGGTCACCCTTAGTGA TGGAGAGGTCATATTATTACCAGAACTGGAGAGTGGTCTTCATATACTGGTTTGAATGTTCTTGCTAAAA ATCTCCACCCTTCCACAGAGATCACCGTCCATATAGAAAAGCCATATAATCAAAACTCAAAGAGTGGTCC TTATACACAGGTTTCATTGTTCTTCGCTCTGTCTTCATAAACATGGATTCATACACACTTCCAGACAGAC AAGCCGTCCTAAAATTTTATCAGAACCCTCTAGTGGCCTTTACACGCAGGTTTGACTGTTGTATTTATCG GTACCGAATAAGAAGTGCCCTTGATCACTCAACAAATGTCACAATACAAGCATTTAAAAAAAATTTAAAC AAATCTTAATAGCCTGGAGGCAGTATACATGTTGCAAGCTCTCTGTTTTTTTTTGTACACCAAAGAAACC TTTTTCCAAAGCTACTAACAAGTATATGTGTATTTGTAATACATGTAATTGAAATATTTACAAGGGGGTG TTCTTTTTCACCATTCTGTATTTCGATAAACCTACATGTCATTGAACCTTTATTACTTGGTTTGTAAATC AATTTTCAAGTCCTCTTTTGATACAATCAAGAAATGATGCCAGTTCATTGCTGCTTAATTCAATGCCTTC TGATTTATTTGAGGCAGATTATGTAAAGTAAAAGGTGATTATCTGTAAGAAATTTAATCAAAAATACGGC TTAGATTTGTAAACTTGAATTCAAAAATTCAGATTTTGGTTTGAATTAAATTACTGTTCAACAGAATCAT AGTAAATGATTGCGTGACTGTGAAATAAATGTTTTAATGTTATTTCATTTTTGGTTTTCTGTAGCAGGCA TTATTTTAAGGTTGATTGGTATCAGAATTATTTATGGTCTTATATCATACGGGTTAAGAATAATTTTGGA TGCTGTGAAACAGAAAGGTCTACAATTATATCCCAACTCTTGCCGACTTATTGTTCTTCTCTTCCTCTCT CTATTTGAGAGAAAAATAATATTTTGAAGTGGTAAAAGAAATACCAGGAAAAAAAAGACTAGAACTTAGA TATGTCACTGCTTTTCTTGAAAGAATAGTGATATAATAATATTCTGTCTCTTGTATGTGATGATTACGAG TGTTTCGTGGGGGGGGGGGGGGGGCAGCTCATCGCAGGTACAGTATACTGAGTTACATGTCTCACTATTG TTAAACCCTTTATCATCATAATTTGTGATATCGAAAGGGAGATAATTTCATCATGTGTATAGTTTCTCAC TGGTACTGGTACTGGTGTATTGCTAATAGAAATTTTCACAGCACTTCCATTAAAAGGATTTAGCAGGAAT GATTTTTTAAATGTTATTATTATACATCTTTTACCAAAGAACAACTTCTTGATTCCATACTTATGTACTA CACAACAGGATTCTGTGCTATGATAGATATATTAAATTGGAAATGTATTCTATTTATGAGATTATATTAT ATCAATCAACTAACTAATGTGATAGTATTACTAAAGATTAATAAAGTATTACTAAACTGATTTCCATATT AATTTCTTTGCATATCGGTTTAATTTTTTAGGTTGTTCCATCTTTGATTGTAGATTACGCTTTATATTTT AGCAATTATGAAGTGCCTATTGTAGTATTTATTCAATATATATTGGTACTTTCTATGAATTTTTATGAAC GATTGTATGTATGGTAAGTAAAATAATGTTTTGCATTGAAAAACTAGCATGTTTGTGTAATTGTACAAGC AACATTTTACAGAAAGAACTACAAAATCAAGCAATTAATTTACCAAAGGTAGTGTAGTTTGTCAAGATTA GTTTAGGCTTGTAGTATATTTCCGGTAGCACACTTTCTTCCACAATGTACGTTCCAATTTCATCTCCTAT TTACTGTTCATTCATGTGAATTTGCAATCAAAATATGTTTCATAAATTGTAAACAATGTTCTTCTTTGCT TCAGTAAACTTAAGGTGGGCTGCAGTAATGTATTGTAATAAGTTAATGTTTAGAAAGGCAGTGTTTTTTT TCTTCTCCAACTTGATCTTTGAAAAGAAGTGTTTAAATGTTACTTATAAAGTTAAACCAATCTCAAAAAA TAAAACTCGGCTTAATATTCAGCTCATCAGGATCACACATTTAGGGTTTGCGTTTCATTTCTGGAGTTGT GTTTTAACTTATTTTTTTAAGTGGATGGCCTTTTTTCTTCATCTTATTATCATTTTTTTAGGGGGGGGGG GACAATTTTGAGCATCATGTGACTTGTCAGCAAATTTGATCTGCTAGCTTCCGTTCATAATGGTCCAATA TCCTTAATTTTACCAATGTTATATGGTATGCATGTTTATGCATTTGTGTTAATTGATGTGAATCAAATTA TTTGTGAGAGAAAATGATATTATTTTGACACTGTCTGTGATTTTATCTGAACACATATCTGTATTTCCAA ATACTTGATCTGAAATCTATCGAAGTGATTTGTATGACTTGAAATATCTATTTAAATGTTGATTTGTTGA TGATGGTATATCTGGAAAGTTATTTGACTGTACATATTTGTGATGATTCCAATTAGATTATATGATTTTG AAGAGTGTATATTTGAAGCTATGTATCTTATCATTGTATATTATTGGTAGGTTAAGGTTTGAACCCAGAT CTCTTTATTCATGCTAGATTATAGTGTTCCTTGCTTTAATACATTTCTTCCATCTTTTGAATAAAACTAT TTATCTAGAAAGCATGAGAAACATGCAAGAAATATTGAATTGTGTAATAGAAATTAATCTCATCTTGTTA AACCTTGTACTGATATTAAGTGGTAAGCTATGGTTTACCTATCTCTCTCTCTCTCTCTATTTAAGAGAAT GCACTCTGCATCTCATAACACAAAGCTCAGTGACTACGCATATGACCTTTGTTGCATGCAGTGCTATTCA TTTACATATACATAACAAATTTTTAAAGGTCACAGTTTACTACAGTACATCTGGACGAGCATTTATGTTT AATAACGGTCAATTAAGTACTTAATGTTAACTGCTTGAGCATTGAAAGTGTCTTTAAAGCCTTTGAACCT TGTTTGTGAATGTAATAATGAATGCACCATCAACGAGAACAAATAAAAGTGTGATTTTTATCTGATTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds