Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030976847.1 PREDICTED: Strongylocentrotus purpuratus cartilage oligomeric matrix protein (LOC576669), transcript variant X1, mRNA CATATCGGGCATTTATGGCTTTTCTTCATCTTGTCTCTTACTAATTCTGCTTCCCACGTATATGATATTA AATTGTATCGTCTCAAATGTTTTACTCTCTTTTCTAATTTCCGATTCAATACTCCATTGGTCTGCATCTC TTCTTTTCTTAGTTTATCCGTCCATTCAAAACGCATGATTCTTGTCACCTCTCTCCCCTCTTCCTCGAAC CCATACCGTGAGCAACAAGCCATGACCCCGGCCCAACCTGGACCGGTACCGGATATATTTAGACCGGTTG GCAGAGCAGACCAGGCGGCATTCAGCTGACGCTCTTGAAAGCAGGACGTCCACACTAGGAACCTCTCCTT CCATCGTCTACCATCTCCACGGGCTACCAACAAACTTCATCAGCAAAAGCATCTATCCACCTCTTCTTTT CTGGCAACCCTCCCATACGCACTCGCCCGGCTCTCGCAGATAACGGGCATGCGAGCGCATTCAAAAGCCA AACACCGTCACAGTTCGACGTTATCGCATTGACGAAGGAGCAGCGTTACATGAATGTTCGATTTTGGACT TCTTCCCATTTTTGTTTTTAGATGGCCAAATATACTTGATTTTGAGCAGAAGACGTACAATTTGCCGGAG AGAATCTTTGAAACCAGTGCGTTGTGACAAGTAAAAGGAATTTATAAGGGTTTGGCTTTTTAAAAAAGTG AGGGAATTTTTCAACGGCACGATGCAGTTCGGCACGTGTTCCATCGCCTTCCTTCTGATGCTATCCGTGA CGTCATCGCAGATACCAGTCTCTATGGGCGTCGAAGCGGATCTTTTCGACGGCTTCGGCATCTACAACTC CCGAATCCCCGGGGTCTCACCCGCCCCGCAGGAGAACTCTAACATCTACGGCGATGCCTTCTTCTTCAAC GGCATAAGCATTCGTTATCCCATCATCGCCAACCAAGAATTCTTCAAGAAGTTCGCTAAGGAGATGCGGA AGAATGAGGATGTATACTTCGTGATTCGATCACGGCTTGCTCCTCGGCATCATGGAGTCTTATTCGGAGT GTACTCGAGTAATTACTACTCACAGGACACCTTCAGAACGCCACTTAGGTTTGAGCTGTCCTACAATGGC ACAAATGGAGGAAAATTGGTCCTCAAATACCGCGTCGGAGATCAGCAACGCCAGGCGGAGTTCCCCAACC TCCTCGTGGTTGACGGTGATTGGCACACCATTATCCTCCAGTTCCACACCGAACGATCCAGCACGACCCT CACACTCTATGTCGACTGCCGGCTCGCTAATCAGATGAAGATAGGGGATAAGTTATCCAGGGTCTTCTCT CGAACGGTGATCGACGGTTCAGAGATGAGGCTGGGTCAGGCTGGTTACGGCATGACTGCAAACCCACTGA AGGGTACGATTCAGAATGTTAGGTTCATGTATGGAGGTCCAATAGGAGATGTGCTCCACTCACTCTCATG CAGTCTGTCTACGGAACCTAAGCCACTTGATGCTGATGGATGGCCTGGAGCGACTATTTTGATGGACGCC TTTCAATCCTTGTCTAGTACACTCATGGTCTTGAAAAACGGCATGGATGACCAGACCCGTGAGATCCGAC ATCTAAGGAATACCCTCGAAAACTGCAGAATGTGTGAGCGAACCGATTATTTTACCTCAGGTCCTCAGAC AATCATCACACATGGGTGTAGCTCGAATCCTTGCTTCCCCGATGTTATGTGCTTTGATGAGCCCGATGGT CTGGGATACAGGTGCGGTCCTTGCCCCGCTGGCTACCGAGGAAACGGCTCCTACTGTTACGATATCAACG AGTGTATTGAAGCTTACCCGTGTTCAGACGTAGTAGAGTGTATCAACCTAGTCCCAGGGTTCCGCTGTCC ACCATGTCCTGAAGGATTCATCGGTCTTGGATTAGAAGGAATCGGTCTTGAAGCTGCTGTTAGGAACAGA CAGGTTTGCGATGATATCAATGAGTGCGAAAGAAACAATGGTGACTGCGTGCCAAACTCTTACTGCATCA ACACAAGGGGTTCACACATCTGCGGTGACTGCAAGCACGGGTTTGAAGGCAACCAAACGGTTGGATGTAA GCAGAAGAATACATGTCCTAATGGAGAACGCAGTCCCTGTCACCCCAAGGCTAAATGCATCATACACAGG AATAACGCTTATACGTGCGAGTGTATCATTGGGTGGGCCGGTGACGGCTACGATTGCGCTCTTGATACCG ATCTGGACGGCTATCCTGATTACGCTCTTCCATGTACCGACAAGCATTGCAGAGCTGACAATTGCGTATA TATTCCTAACAGCGGACAGGAGAATCAAGATGGCGACGAAATGGGTGACATTTGTGACCCGGATGCAGAC AATGATGGAGTTCCTAATGGTCCGGATAACTGCCCTCTGGTGGCGAACCCTGATCAAGTGAATAGCCAAG ACGATGACCCGGTGGGCGAAAGATGTGATAACTGTCCGATGACGCCTAACCCCAAGCAGATTGATACCGA TGCAGACGGCAAGGGTGACGAGTGCGACGACGATAAGGACAATGATGGTATCCTAAACATCTACGATAAC TGTGAACTTGTTCCGAACAGGATGCAAGATGATACTGATGGGGATGGTCTCGGTGACGCTTGTGATAACT GTCCCATGCAATACAATCCAGACCAGAATAACACGGATTCTGATTTGCTTGGAGATATCTGCGATAACAA TGAGGATTCGGACGACGATGGTATTCAGGACAACTTGGACAACTGCCCCAAAATCCCAAACAACCCTCAG CTAGACTCCGACGGTGATGGCAGGGGTGATGCATGCGACGACGATGACGACAGCGACGGTGTTTATGACA TCGTAGACAACTGTAGGATCATTCATAACCCTGACCAAGCAGATTATAATCAGGATGGCATCGGTGATAT GTGCGACAGTGATTTCGATCGTGACGGCGTGGATGATCAATATGATGCCTGTCCTGAGAACCCTAATATA TTCACCACCGATCTCAGAACCTATCAGACTGTGGTCCTAGATCCAGAGGGTGAAGCTCAAGTCGATCCTA AGTGGATTGTCTTTGACGAGGGTCGTCAGATCATGCAAACCATCAACAGCGATCCCGGCTTAGCCATCTC TTACCAAGCCTTCGACGGTGTGGACTTCGAAGGAACCTTCTTTGTGAACACCCGAACTGATGATGACTTC GCAGGTTTTGTCTTTGGTTACCAGGATTCGGCTAGTTTCTACGTCCTGATGTGGAAGCAGGGTCCACAGA CCTATTGGGAAGCTTCCCCATTCAGGGCCGTCGGTGAACCGGGCTTCCAACTTAAGGTTATCAAATCCGA TACTGGTCCAGGTGAGATGATGAGGAACGCTCTGTGGCATACGGGAGATACACCGGGACAGTCACGTCTT CTGTGGAAGGACCCGAATAACCATGGTTGGAAGGATCACGTGGCCTACAGGTGGAGAGTCGTCCACAGGC CTTCGATAGGTCTCATCAGGGTAAAGCTGTACGAAGCAGACAGTCTGGTAGCGGACTCTGGGTTCCTCCG AGACACAACGATGAGAGGTGGAAGGATCGGTCTGTTCTGCTTCTCACAAGAAGATATCATCTGGGCCAGA ATAACCTACAAATGTAATGATGATATACCGGAGGGTGTTACCTTCTGAGGGGCGAAACCATCTCCGTCCT GAAAGCGACTTGCCGACAATATAAATCGTATTCAAGCCATCATCGTAAAACATCCAACAAACCTTTACAG AAAGAAGAGTAACACTTTAATTATGTACTTCTGGACAACCGAAAAAACTCCTAATTTCTGACGTCAGGAC GAGGGGGAGTTTGGCGTAATTTAGTCACTGGCCGAATGCCCATTTTTACCTGTAATTTGCACAAAATTTG ACTTGACGTGGATCATTGATATTAGGATTTACATTTGTATGATGCTTTTAAGAAGAGAGGAAGGCAGTTT GTTGCCGAATTGACGAATGGTCTTAATTCATAGCCGAAGAACTTTTAAGAGCAATCTCACTGACGATTGC ATAGGAAAGGAGAAATATTTTATGCAGAGTGTAAAAATTAAAGTGTAAAACTTGTATTCTAATCATTTTT TAACTGCTCCTGGATCAGGATTTTTTCTTATTATGCCACCTTGCGTTGGAAGTACTTGAGAAAAATATTA TTTGATTTATAGATTTATGTATTTGACTTCTTTCATAGAAATTAAAGAAAAGTAAACTTTGTGAAAACGT TTTTTTTTCCTTCTTCCTTTTTTTCTTCTACGATATCTTTAGATCTTGTTATTTCATAAAATATATTTTA ATTAACTCTATGTTTTGTCTAAAAGGATTGTTTGGCGTTCTCTGAATATTTTTCTTCTAAAGTACGCTAA TTCAGTATGAAACATGGTTGATTTACACCCAAAGGAATAATTGAGAATTTTTTAAATATAGAATTTATAT TTTTTCTTCTTATCGTAAAGGTGAAATTAAACCCAGCTCATGTGGTGAAATGACGGTGAATAAAGTAAGA ATCAATGAATTTGTCAGAGTGTTCAAGCGAACAAAAGAGTTATTTATGTTTTGAATATTAATTACATTAT GATGATATTAATACAATTTTAAAGAGGCAAGTTTAATCGATATAGAAACGCAGCTTAAACATAAATTTAA GTTATAACATGGAAATATCACTAAGGTCACAAACCTGTTTGATATTGATATATGTAATATTTTTATCGTG CAATTGATGAGTTTTACTTCTTTATGTAAGTACAGACGTACGAATAGGGCAGGGTTTAGGCGACATCCGG TTTGTGTCATTTAATTAATTTATCTATTAATTTGTTTATTATACATATTGTACATATGTTTGAGAATGAT TAGACAATGTAAATGTGCATGTATTTGTGTTGAAATTAGTTTTAATACTCAACGACAGCCCTAAAATGTA TTGAAATATTCAAAGGATCTAAACACAGATTTTGTGAAACTTTATTTGTTAGGTCAAATTAAAAAAAACA TAAATATTCAACAAGTTTCAGAGAAAAGCAGTTTTTGTAATGATTGAAAAGAACAATGTACGTTAGTTAA ACTACATTAATCAAAATATTAATTATACTTCAAGTATCTAAAATATGATTTTGTAATCATTCTAAAAATG TATATTGAGCTCGAAATAATGCAACAATGAAATAATCCTGAAATAAAAAATGAAGACGATCATTGTTTTG TCTAGGGGGGGGGGGGTCCATTAGTTTGGTTGCACAAAATAGAGAAGAAAAATATTCATTACCTTAGCTT CATGCTCTCCCCCTTTGAAGTTGCAAATGCTTATTCTGAACTTTTCGACTGTACATTTTCTGACTTCTAC CGATTGTCCCTGATGACATTTCCTGAATCTTACATCTTATCTATAGATTATCTTTATCATGCTTATGAAC GCGTTACGTATGAACATATAATTAATTGTTCTAATTGACTTTTTATCGATCTGTACTTCTTTCTGTTTGG AAAATTGAATAAGAATATAAAGTACTTTCCAACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds