Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT107779.1 TSA: Strongylocentrotus purpuratus WHL22.298293.0 mRNA sequence CAAGAACCGTTATCCTTGGAATACTTAACAGATATCTGGTATTGGCAAGGTAACAGAGAGGATGCTGAGT GCTCTCGGAATTCAGACCTGTACTGATCTCTACCAGCAGAGGGCTCTCTCCTATCTTCTCTTCTCCCAGA CATCATCCAGTCATTTTCTTCACATCAGTCTTGGTCTGGGCTCTACACACGTTGAGAGGGATGGTGAGAG GAAGAGCATGAGTACAGAGCGAACATTTAAGGAAATCAGCATACCTAGTGAGCTTTACAGTAAATGTATG GAGCTTTGTGAAGCACTGGCTGAGGATCTTAAAAAAGAACAGATTCAGGGCAAGACAGTGACAGTCAAAC TAAAGACAGTCAATTTTGAGGTGAAGAGCAGAGCCTCATCGCTAAAGGTCCCTGTACGCTCATCCCAGGA AATCTTTGCTATTGCTAGAGATCTGATCAGGACAGAGATCAGAGCTTGTCATCCCCAGCCTCTCAGATTG AGACTGATGGGAGTGAGGCTGTCATCATTTCAAGATGCAAGCAAATTATCCAGGAGCAGACAAGGAACCA TTCTTGACATGTTTGCTAAGAAGCAGAGCAATAATCCACAACCTGTCACTACACCTACACCAGACTGCAC AGAGCCCACCATGGGTTTGCTGGAAGAAAGCACTTCAAACAACAGCTTTAGTGGCAGTGTTGGCACTCCA GGGGAAGTGAGTGATGTGTCTAGAATTCAGGTTTTAGTACCCAACACCAAGGTATCAGCACCCGACACTG AGATATTAACATCCGACACTGAAGATGGTGTTGGTGTTAGTTTTGATAACAAGGAACGTGTAGAGAAAAA GGATGTTGTTTCAGGATCAAAGAAAGCACCTGAGGCCAGGGATTCTACACAATCAGCAGTTGGTGTTGGT GTTAGTGTAAACAGGGTGGATAGGTCAGTGTCATCTGATACTGAACTGTCTTCTGAACAAACCTTTGAGA GTGCTATCACAGCAGCTAATGTAAGAACGTCTATGACTATAAGCAACCCACACCATAGTCAGAGTCATTT AGAGCCTCGGCTGCCATTCTGCGAAGACGATTTTGTTTCAGGAAGAGAGAATGAGCATTCATCAATTGCT GACAGGGAAGAACATACAAAGCAATTGTATCATCCAGAATTGCTTTCCAAGTCAGAGATTTTTAATCAAG AAAATAATCAAAGAGTGGACAAATTGCTGAAGATGAACTCACATGCTAAATCTGATGAATATGGTTCAGA GTGTACTAGCAGTGTGGAAGCTGAAGCACAACGGATGCTGACATGTCCCATCTGTAGGCAGGAGAGAGCG TACTCCACCCTTGAGGGCTTGAATCAACATATAGATGCGTGCCTCAACAAGTCGGCCATCAAAGAAATGC TCCACAGAGATAAGTCAAGAAGTTTTTCTAGCAGTAACAATCAGCTTACAAAGAGCGGTCCAAAGAAGCT ACATTCAAGAAAAAGGAGTAATTCTGGTTCAGGGTCAAGTTCCAGCAAGAAAAAGAGATCCAAGTCCACA CCATGCAGAACATTATATGACTTCTTCCAGAAAAAAGATAACCATTGATCGATGGAACACGGATGTACAC GGTACAGCCTTGTTTATTGTGAATATTTGTGAATACTTTTCAAGTGTAAATGTTTGATTATGTATTGAAC AAAAAGAATTACAAGTGATATTTATACAAGATCAAATCATGCAACTCATTAGCACTTACCGGTATGCATT ATTTTGATGATCAAATTATTACATAGTATACTTGTAGGTGTGTTTTGTATGATCAATTGTGCATATTACA TTAATGTGAATGATTGTTTGCCATTTTTATAAATATTTAAATATCAGTACTTGGGAAAGAAATGTAGATG CCATAATCTGACAGATTTTTTTTTTTTTAAAGATTTCAATTATTGTTACATATATGGATATGATCACAAT GTATATTTAATTGTTTAAGAATACATACCGGTATACAAGTGTATTAGAAAAGCACCCATACTACATGTTT TCATGTTCATATGCTATTTCCAGTGGCTTCCTTCACTCTGTATTGTCATGGATGTAGTAATCAAAATGTA TATTATCAAGCTTTACACATGTAGCCTAGAAGATGTATATGACATTTTATACTCCACTAAAAGTCCATTA AAAAAAAAAATCTTAAAAGTGATAAAAAAGTAAACTGTAAAATTTATCGTGAAAAACAGAGAGTACATAA CAGTATACATACAAGCTACTTGCTGCAATGGAGACCATGTACTTCCTGGGGCCGTCAATGAGATAAAAAT GTGTCAAAGCAAAAGCTTAGGTGTGTGGGGGGGGGGGGGAGGGGGGATGGGGGTACTTAGCATCTGTATG CATGTTTTAAAGGTAAAGACCTGTATTGGAAACGCCCTGATTTCAAAAAATGAAATGGAAGCTCTTATTA CCAATCATGTGAAAGAATATGTTTTGACTAATACATTGGTCTGTGAGAGCATGCACGTGTGCGTAGTCCC ATATACATCTTTCGGTGTACAGTGCTTGTAACTTTAAGAAGACTGGGCCAAAATTCTTATCACTTTTCTG ATCGATTCCACAATGTTTCTTTCACAATGCAATCGCATGACCATGTAGTGACCAAATGTCACGATTTTAA ACTTTTATATTTATAATAAGGTATATATATGCATTGATTTGTTCATGTGTAATAAGTATTGCTTTTTTAC TGTCAAGATGGCGGCTAGGGAGAATTAATTTCCCTTGCGTAGTCAGCCATCTGGCTTTTTCAGACATGTC CCAACCGGTTCTGTCTGGTTTGTTAATATATTCTATTATGTAAATTTTGTATTGTTACGAACAGCGCGTA AACGTGCAAATTAATTTGTTTGCGCTTTTTGAACCAATGACGCTACACCAGTGATTGGGGCTTCGCTCTG ATTTTCCATGTAGGAATTGGTGGGTTTTTTATTTCAGTACGCAAAGTTTGTTTCTATGTTCCTGTTATAC CGTGCCTGTAGAAGTTTCGTCCAACGAGGACTTAGTGACTTTGTCTCCGGACCTTTACCGGTGGATTTGC TCAGTAAATGTCTTGCAGTATTTTGCAAGACTTAATTCGACTCTATTTTTACATCAGTGACATCGCCTTA TATTTTACTTCGTGCAGTGAGAATAGAACATTTTTATCTACGGTTCTTCTCACCCTACATTATTGTATTG ACAATCTTTTATCGACATATTTGTTTCTATTGCCGCCTTCTGTGCGTTAATTGTCTCGACACGTTGATCA TCCTTTTGTCGAGCATCATCTCGCCATCATCTGATTTCGTCATCCACTTCGATCATTACTGACTCATGAC CACAGAATCATTCTTTTATTGACTGTCTCATCATCAACGAGACCCTCATCGACTGCATCGCCGTCTCCAA CATCGTTTTCGTCATCATCGTCTTCTTCATCATCAGCGCTGTCTTCGTCATCGTCTCCTACATCATCGCC ATCGTCGACTTCATCGCTGTCTTCATCATCGTAGTCATCCTTCTCATCATCATCCACGTCATCGTCGTCA CTGTTATCATCAGCAGCATCATCAGCAGCATCAAACTTGACTTCGCCGTAGCTGATCTGGTATTTTGAAT GCTTTGCTAATTTATTTGATGATCCCTTTTGTGTTTGATCTTGATGACTGATTATTGTTATTGTTTTGAT GAATGATTATTGTTATTGTTGTGTATGATATTGTATTATACTGTGTATTCTTGGAGATTAATCTTCGGGG CTTTTCATACCCCCTCAGAACGATTCCGTTGACTATTTTTATCCAGTGATCACTGTTATTTTTATGTAAG GTATTTGCCGTCTGAGGGAGTTCTTCTCTCCGGAGATATTTGATTATTGTGTGTGTTTTTTTGGTGTGTA CACCAAACGATTATACGACCCTTGATAATTTGTGTTGATTATCTATAATAAAGCCTTGATATTAATTACA TAACCTGATTGTTTGATAGTGTAGTTTATTCTTCGTGAGATCGTGAAGTTAAAAAGTACGACCCCCTTCA GGGGAGTTCCACAGCCTGGTAGAACATTCTGTGCATAAACTAATTCGCTCCATGCAAGAAGTTCGATTTA AATGTTTGAATTTGAATGGAATGATTATTATATTGTTATATTTATGTTTCTATGTCATAAAGGTATTACT ATTATCGCCCCGAGTCTTTCATACAATTTTCATTTGAATTTTGGAATACATTCATATGAAACTAGCCAAT CATCACATTAGGTACATCAGGTACAAGATGAATCGACTTGAGTCAGACTCGGTCTGTTCCACCATGCAAT GATTAACATGGAGTTAGATACATGGGCGGCATTGTCAGTTATCAGTCTTTGCGACTTATGGAGAAAAGCC AATTCATGTTGGGCTACAGCAAGTGCAGAGATCTCTGCACCCTTATGCCGGATCAAAGTTGGAATAGGCA GGAGGAGTGGATGTCAAAGTACGCCACAACGGACAGACGAAGAACTTATCCTTGGTAGTGGTTCAGACAA CAAGGCAGGCTCCAGCTTTATAAGGTTAATCAAGGCTGTCTCGAGTGAGACTGGATTGGGGAACCTTGTT GTTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds