Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT107083.1 TSA: Strongylocentrotus purpuratus WHL22.535849.0 mRNA sequence GTTTAAGCTGATAAGGCATCTAAGATATCCCTACCATGGGACACACGGTAAGTGCGTGACCAAAGCAATG GTTTTATCTCCCTTGGTATATTCTTCCTTTTTCGTTTCGTCTATCTTTCATCACACGAAGTTTTTAGTTT GTACAATCGTATCTCTTACTCAAGAAAACGGAGCTGGAGATCGATTTTAAGGCGGCCATTTTGTTTTGAA AACAGCGCTTACAGCAGAACCAGCTACATTGTGAATGTTTGTGTTTTAAAGCTACGTGAAACATGGTTTA GTTTATGAAATAAAAGCATACCATAAGGATTATGTCGAAGTTTCAGTATGTATTTGGACTTGCTCTCCTT CTCAGCCTTGGGTTGATTCGTAATGTAAACGGGGATTGCACAAACAGCGATGGATCGACGTGCTCAGGAA CAGATTGTTGTTATGACGGTACCAATGGCTTATCACCGGTCCTGGGTTCTGGAGGTGGCATAACCCCAGT ACAAGAATGCTATACCACCGGCGCCGGAAATGGAGTGACCTATACCTGTACTGGTGATCTGAGGGGACCT CCTTACAACGATTGCTACGATGGGACATGGCAATTTCCGTTCGCACCGACATGCGAAGGTGTGACTTCAT GCACCCAACCTACGGTACCAACAGACGGCAGTATCGATCCCGATACTGCTGAATATGACTTATATACCCG AATCACATACGCCTGCAGCGACGGGTATACGTTGGGAGGCCCATCTGAAGCGGTCTGCGAAACGGGTGGG GTCTGGAATCCGTCCACTGTACCCACCTGCGAAGCCAACTGTGCCAAACCCACTCTGACCAATGGAGGCG TCAGTCCAGATCAAGATACTTTCAGTAACGGCGAGGTTCTCATCTATGTATGTAACACGAACTATACATT GGTCGGGGTATCAACAACAACATGCCGCAGTGGAGTCTATGATCCGTCAACCGAACCAACCTGCTTTAGT ATGTGTAATCCGCCTGTCGTGGACAACTCCGATTACGCTGTGCAACTAACTCCGGTCGACCACGCTTCCA CAATTACGGTTAATTGCGACCCCGGTTACTCAACCGGCACCGGCACCGACCAGGACTTGACGTGTTACAA CGGCAATTTCAACGACGACCCTCCAGTGTGTTACGCGAACTGTCCCCCTCTTGACGATTTTGACAACGGA GTCCGCTCTGGAGATTCAATCCCTTTCTACCATAACGAACAGGTGTCATACACGTGTAACAATGGTTTCA CGTTGGTTGGCTCCACATCTCTCACGTGTGGTGACGGCGATTGGAATGACGTTCAACCAGTCTGCTTAGC GAATTGCGCTGTGAGTGCTGTACCGGATTCAGATTATTCATCTGGGGGTTCAGTCACGCATGGTACGACT TTCAACGTAACGTGTGACTCTGGCTTTTCCACGGGTACGACGAGGGCTACAGAGTTCTCTTGTAATGATG GTGTCCTGTCTCCTGATACACTACCTACATGCTACGAGGACTGCGAACCACCGACCGTACAATACTCCGA CTACAGGGTCCAACAGCCTGATGTATTGCACAACACCGACATCACCATAACCTGCTGGGCGAACTACTCC ATCGATGCAGACTCCCAGAGCGCTACGCTTTCGTGCAATGATGGGAGCTTCCAGGAGGATACGCCAACAT GCTACGAAAATTGTCCGGAGATATCTGATCCAGATAACGGTATAATAACAAGTGGAGAGAGCCCCTTCTA TCACCTGGAAGTGGTCACCTTTGAATGCTCCGACAACTTCACCCTGATTGGTCAATCAGAAATCACGTGC AACGACGGAGCATTTGATAACGATCCGCCGATATGTTTAGCCGAGTGTAAGCCGCCCGTGATACCAAATT CCAATGCAACGTCATCATCGCCTCTCCTGGAATCGGGCTCCACCATCACTGTGACGTGTGATGACGGTTA CTCCAATGGCCAATCACGAAGCACCACGTCAACGTGCGATAACGGAGAGCTTGAACCGGCCTTGCCTCTT TGCTATGAGGACTGCACACCGCCTGTAGTGGACTACTCCGACTACGCCACTCAGGGGAATGATGTTTACC ATACCACGGCAATCACCATCACCTGTAATCCCGGGTACTCTACGGGCACTAGCCGAAACACAACCTTGAC TTGCACCGATGGAAACTTCGACGCCACAGCTCCCATATGCTATGCCGACTGTATCACACCAGTCGTGTCG TATTCCAACTACCAGTCGCAACAACCCGATGTCTTCCACGCAACCGAATTTACCATACTTTGTTGGTCCA ACTATTCCACGGGGCCGGACTCTCGGGAAACTCTAATTACCTGTAACGACGGCACGCTAAGTGAAGATGA TACAGTCTGCTATGAAAATTGCATGGTTCCCGTCGTAGAAGATTCAGACTACAGCGATCAGAAAGAGGAC GTGTTCCATTTAGTGACATTCAACGTTTCTTGCGACAATGGGTACTCTAACGGCGATGACGTATATACAA CTCTGACGTGTGATAGCGGTAATCTAAACGATGCGGATCCTACCTGCTACGCAAACTGCCCAGATTTTGG GATTATCGAGGACGGCTCCTATTCGGGGGACACCCCTCCCTTTTACCATGAGGAGACCGTAACATTCAGC TGTAATACCAATCACACTCTGGTAGGTGACGAGACGCTCACGTGTAACGATGGCAACTGGACCGCATCTA TTCCATCTTGCGAAGCGGACTGCCTTCCACCTGTGATACCTAGCTCTGACTACAACACCAGCAACCCTCA GGTTACGCATGGTACAGACCTGATGATCTCTTGCAACACCGGGTACTCTACAGGTCAAAACGAAACACAG TATCTCACATGCGTCGACGGCACATTAAGTCCCGTTCCTCTCGACTGTCTACGGGATTGCACACCACCTG TTGTAGAAAATTCTGACTATGCTGCGCCAAGAGACACTGTGTTCACATCCGAGTCGCTCATCATAACATG CAACGCGAATTTCACAGTAGGAGGCGGCGACTCAACAGCTACAACAACGCTCACGTGTGACGATGGTGAA CTCGACCCAGAGGACGTGACATGTTATGCAAACTGCCCAGATCCAGGCGAACCTGTCGACGGGCAATACG AGTACGAAGGCGATGGGTTCTACCACAACACGGTGGTCTTCTACTACTGCGATGACCGCTTCGACCTCGA AGGCGAGAGCGAAATTGTATGCACTGACGGGGAGTGGTCAGGCGTTGCCCCTAACTGTACAGACAAGGCT TTGTCTGACCTGATCATGCTCACCTGTGGTCCGACCAGCATGGAAGTCGAGATACCCCTCGTACTCCTTG AGGACATCGATGTGACCGACATCGGGATGGAAGGCGATCTGGGCTGCACCGGATACATCGATGGTGACAT GATGAGGGTGAACACGTCGCTGTCGGGGTGTGGCACCAACAAAACGGAAAATTCCACCTATGACACCTAC ACAAACCGCGTGGTCAACAACTACTTCGCGGACGTCATCACCCGTGTCGTCGATGTCCAGATTCCGCTGA AGTGCTCATACCCAAGAAATGAGATAGTGCGCGCCGTCCGCTACGCAGTCCTCGATTACGTACTGGGGAA GAACTTGGAAGAGACCGGCGCGTACGAGACGACGTTCGGAATCTACAACACCTCGCTGTTCACGCATCGC TACGCGGACGGAGGGGCGGTTGACCTCGATATCAACGAGAAGTTGTTCTTCCAGCTGCAGCTCGTAACGG ATGTCGCCGACAACCGCCTAGTCGCGGAGCAATGTTGGGCTACGCCTACGGTAGATTCAACAGATTCAAC TAGCCATGATTTGGTTGACGACGGGTGCCCAAGTGATGATACTCTGGCGTTCTTATCGAACGACGTGGAC GATACAACTGTTCAGTTTGAACTCAATTCATTTAGATTCGTTGACGACACTGATAAGGAGGTTTACGTTC ACTGCGAGGTATTCGTCTGCCACGAAGCCTCAACCGATTCTTTCTGCACCGTCAACTGTCCAGCCTCGCG CAAGAAGAGACGCACGGACGGTCACATGAGCGGTTGGGAGCGCGCCAAGCTGAAGGGTCAAATGTTATAC AAGACATTATTGGCTGAAGGAGGTGACCGAAAGAAAAGGGCCAGCGCGAATCACGATCCCGTCGTCAAAT TCGTCAAGGCCGGGCCGTTCAGATGGAATATCGATGTTGGTGTAGAGCAACAACTCCTCGCTATTCCACT CGAAGGTGGGGAGTCCTCGTCGTCTGCCTGGATGCACTCAGTTATCGGCATGGCCGTCATCGTCGTGGTT TTCTCAGTCATACTCGTAGTCGTGGTCAAGCACTACAAGCGACGGCTAAGAAGTGACTATCGTTACAAGT CTCTTAATACATTTAACTAGACCCACCGGTCTCCAACTTTTATATGATTGAGTAGAGCATGAAATAGCTC AATTATCGAATGTCAGATCACATGGGGGGGGGGCGATCGAACACGTTATATAAAGGCGACGCAGAAACTA TTGTGAAGCAAATATTGTAGATAATATGTAAACAAATTTTATTTTGTTCCTCAAATGTTATTTCATGACA AATTGAAATGAAAAGTATAATAAGTGCACTAAGAAAAAAGACATTTATTTCTTAGCAAGAAAGTAGCCTA TTGTATACGATACCATATCAACCAAAAGTGGGGTTATATATTACTCCTTACAAACAAGATGTGGCGGAAT ACTTCACAATAAAAAATGTGGATATTTCAAACCATTCTTTGGAGATATTGGAAATGGTGGTAACTGTAAT TGTAGTGTAACGTGAGCTCGTTCTATGTTATTCAAAGTGGTTAGCACATTAAAGTTTGCGCGATTTTATT TGTATAATGTATGTTTCTGACCAGCTCGACGCTCCACCCCCCCCCCCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTATCTCTCTCTTTCTTGTGAACGTGAGCGCGTTTTATGTTGTTCACAGTGGCTAGCACATTCA AGTTGGCGCGATTTTATTTGTATAATGTATGTTTCTGACCCGCTCGACGCCCCCCCCCCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTATCTAACTCTCTCTATCTATCTTTCTTTCTCTCTTTCTCTTCGTCTCTCTCC CAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTTATCAATTATGCTGCAAGTCACTTTTAATTCAA GTAAATAAAATAAGGCATATGCTTGCTTGCTTGCTTCCAAAAAACAGAATTACACAAATTACGGTAAGAA AATGTAATATGCTCGCAAACGTAACTTCATATAAATTTATCGCCAAAGATCGTTAGTGTTATGAAAGAAA GCACAATAAACCGCCAATATTACATGACTTTGCTGGGTATTGGAACACTGTGAGAAGGTATTAGAGAGGG TCATTTCATATGGAATTCGAGTTATAGAGTTATGCACGCGTGCGTGTGCGCGCATGTGTCAATTCAGGCT CGTTTAATGGCACTACCTTTCGGTAATTACGATTGTAATGTTCCTTAACATACATGGATATTATTTGAAG CTGATTTCTGTATTGTGGAAGTATAGAATACAGGTATCAACCTCTAAAAATCAGAGGGAAGCTATTTGTG AGTGGTCTTCTTCTAGGGAAGTTTCTTCAAGAAAATAAAGTGTGATAAAAGCTTGATTTATTTAAACAGA TGTACCCGTTATTTTTGTGTATTTCTACATGACTGTGTATTCTTTAGAGTACTATAATTACCGATTTTAT TTTATGTTATGATATATATTTCAAAGTTCTTTTCCCATATGCTATATTATCATGCTGTTATGCAAACACA TCCATCTTTATCTCCCTCATCCTCAACCAATCTCCCGCTATCTATCTATCTCTCCTCATCATTACCTCTC CCTTTCACCTGTTTCCCCTTGCTTTAGGTGCCGTTTTCTTCTGTCAATTTAACTAACAATAAATCTTTCA GTTGTACCATTACTCAGAATACATGCGTGAAATATACATAATATATTTTGCTTGTCTAATCATGCTAATC AA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds