Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_003723778.3 PREDICTED: Strongylocentrotus purpuratus protein fem-1 homolog C (LOC576435), mRNA TATTTTGACACCGGCCGCCATGTCACTGCAATTACACGCATCTTGACACCCAAACCGCAAGTATGAACCC TATAAATATCATGTTCCTCTCGTTATTTTCACTAGATTTTGATGTGAGGCATTCTTGAGAGTCGTATAGA AATGTCAAAGAAACAACCACCGAGTTCGCGTGATCCCAAATTCTATTTAGTGAGTGTATTTACCGCTGCT CGGGATGGGAAGTTGTGCCGCATCAAAAAATGGTTTCAGAACTTCAACAAGGAAGAGATCAAATGGATTG TGTCACAAATTGTGGATAGCACGACACCACTTATTGTTGCTTGTAGACACGGTCACATAGATGTGGTAAC GTATTTCATTGAACAATGCAAGGCAGATATAGAACAAGTTGGTTCTGTAACGTTTGATGGAGAAACGATC GATGGGGCGCCACCGCTGTGGTGCGCCGCTGCCGCAGGGCATTATCAAACTGTTTCAACACTTATCAAAC ATGGTGCCAAGGTAAATCACACCACCTTCTCGAACTCGACACCACTTCGTGCAGCTTGCTTTGATGGTCA TTATGATATTGTCAAATATCTCATACAACATGGAGCAGATATTGAGTTGGCCAACCGACATGGACACACC TGTCTCATGATTTCGTGTTACAAGGGACATTACAAAATTGGAGAGTATTTACTTCATCTAGGCGCAGATG TAAATAGAAAGAGTGTGAGAGGAAACACTGCATTGCATGACTGTGCGGAATCAGGAAGTCTAGAAATCAT GCGGCTCTTGTTGAAGCATAGAGCGAAGATGGACACTGATGCGTATGGGATTACGCCGATCAAAGCTGCC GCAGTGGCAGGTCATGTGAACATTGTTGATTACCTTGCTGCAGAAGACCTACCAAGGACAGAGAAAATTG ATGCTCTAGAGCTGGTGGGAGCAACCTTTGTAGACAAGAAAAGGGATATGCATCAAGCGATTGGTTTCTG GGAACGTGCAATGGAGCTGCGTTACAATGACAAAGTTCATGTTGTTCATAAACACAAATGTGCTAAACCT GTATCTGCGTATGAGTACACAGTGGAGGCTCAAAGCAGGCAGGACCTTGAAAATATGGTTGGTGATCCTG ATGAAATGCGGATGCAAGCTTTACTGATACGAGAGAGAATCCTCGGACCAGCACACCCAGACACGACCTA CTACATCAGATACCGTGGCGCAGTCTATGCCGATTCAGGCAACTTTGAGCGATGCATTATGCTATGGATG TATGCACTGGAAATGCAACAGGAAGCATTAGAACCTCTAAATCCTATGACACAAAGCAGTTTACTCTCGT TCGCAGAACTCTTTGCGTACATGTTATCAGAACGAAACATTGAACGTGTATACCAGCATGTACCCTTCGG TGATGTCGCGGTTGTGTACTTGAAAGGGATCACCGAGATGAAGCGCGGTGTTGCACAGCTGCCCTTCGGT CCTCAACAGGAAAAGGAGACCACAAACTTCAATCGAACCCTCCTCATTCTCATGCACCTCATGTGTCTTA TAGCAAAGCGAGAAGGCGCAACGCCTCTACAGATGGAAGACGTTAAACGGGCAACTTACCAACTCGTAAA ACTCCAGCTCCGTGGCAGCAAGGGATTCACCGTGTTGCATCTTGCTGTTGACAAGGCCACCTCATCTGTT GGGCGTTACCCCGTCTGCGAATTTCCAGACAGGAGAGTTGTGCAGTTCTTGTTAGAGTGTGGTGCCGACT CCAACGTCTTGGACGTCAGTGGCAACTCACCTCTCCACATTGCTTCCACAAACGCTGTTGCTCCGGGTTC TTCAACCATCACAACAAATGGTAGCAAGGTGGACAACAATGAGATCATGAAGCTGCTCCTGGATCGCGGG GCACATTGTGATTTCCGAAACCTGGACGGTCATACCCCACTGGACTTGCTCAAAGTGTCTTGCGATCTTG CACCCATCAACTACACCAAGCTGCAGTGTCTAGCAGCCAGGTGTATTATCGAGAACAAGATTCCTTACCT AGGGAATATACCTAAAGCTCTTGAAGGCTTTGTTGCTATGCATTAAATGTGTATTGTGTAATGTTGATTG GTTAATCTATGTTCTGCAATTTGATTTGGGTTCATGATCTATTGGTTTGTATATTAACCAGTTCAGGTAC ATGTAGTTAATATTCTTAAATTATACAGAGCTACTTTCATATTCATGCAATGTATTACCAACATTTTTTT CTTCTTTTTTGTCCTACATGTATGCTTTAGTCTGTTTTTGTTTAGATTATTTTTATGCAGATTTTACTCT AGAGATTTATCTTTTTGAAAATGCTGCACGATTGTCATGATTAACTGTTATATTCATGTACATGTACATG TTACATGAACGCCAATTCATTAGACTGAATTTTCTGTCCATGAGAAAGAAATTGATTATTTGTTATTCCG TTTTAATCTGTTTAGTACATTCAAATTTCAAAAGGAAAATTGCGCTGTTTAAGTAAAACTGTAGAACAGC ACTGCTAGTATTTTATTCAAAATTGGTTAAAAGTTCTGGTTATTAAAATATATTTGTGATTAATTTTACA GAATGCAGTATAAAGAAGTTCCAAGAATGATATGTCCCAAAACATCAAACTGCATCTATAATTTTACTTC AGATAAAGTCTTCAGGTAAAGTCTTCAGGTAAAGGCTACAAAATAGATAGAAATGTTTTGTTTTTAGCAC ATTTTCTGTTATGTCAGACTTTTAGTTAATCAGTTGTTCAATTTATTTTTTTACCAATGAAGATTTCTTG CTACCATAAAAGGAATCCTTTTTGAGCTCATAGTATTTTTCTTTAAAAACCCTCTTCATAGGATCCAATT AACTATTAAATTATTAATTATTTAAGTATTTCATTTTCTAAATCGGGTCTCGTGAATTATTAAGCACTCA GGTCAAAAAAAAAATTGTACTTGTCAAAAAATGCATGTTTTTCATGAAATTATGCACTACATTGTACATG TATGCCGCAAAAAAAGCTAACTTTCAGAGCCAGAGAAGAACATACTATTTGAACTTTAAAATCTTATACT TAGTGTCCTAGTCCAGAGCACTGAGTTCCATTGGCAGATAGTGAATGTTAATCAAGTAATCATCATACCT TTTGAGACTCAGAACATGCAGCACTGTATGACTTTATTTGTGTGAATATTGTTTTGGAAAGGAATTTAGA CTACCGGTAATTTTACAAGCTTGTATCCTGTGCAGTAAATTGTAGCAAAATTTGTCATGCAATTTTGTAC TCTGTCACAAGAAACCCTATTCATAGATATTAAGAGCATAAGGTGTTCCAGGGGTATAAGGTGAACCAAG GGTAGTACAGTGATACACAGGAAATTCCTTTTACAATAATCTGAGTTTAAATATTACAATAGGACAGTGA AATCAGTATATAAAGACCACTCAATGAACTTTCACTTTTTCTAGGAAGGTGGGCTTTACGTACAGAAATG TGAAATTTATTTAGAGAGATGGTCTTTCTATTCAGGTGGTCACTTTTAAAGAAGGTTTCACTGATACTGG AAATGGAATCTGAGGCCTCTTTCATAAAACATGTTTCAATAACAAGTTCCAATAACTGTTACAAATGTAT TGGCTACTAAAACCATGGCATTTGATTGGCTGAAAGCCAATTTTTCATAGAATTGTAGTATTTGTTATTT ATAACAAGATTTATGAAACTGTCTGAGTGTCAGTCAGCCATACAGGTAAACACCATATTTTGTTTATAAT AGGCTAATTAATGTAGTCCAGTCATGCCATGGAAAATTTGTATGTTTGTTACAAAAGCATGCATATTTCA TTTACCGGTAAGAATATATTTGAAGTGCTAAATTGGTTCAGAAATTCAGAACAAACTGATAATAAAATCT AAAGGTTAGTGCAGAGGAGTAACTTAATGTGCACAGGTTGACTTAAAAGTCATTTCAAGTAAAATTGTGG TATATGGTTACGATGGTGTATGCAAGTCAGTGTGTCATATCATAGGTCATCAATTATCAAAATGCTAAAC GATTCTGAACAGTAATTGGTTCCAAATCCCTAGATTGATCTCCCACGTTTCCGCAGTAGAATTATGGCAA GACAGGCAAGCAGACAAAAAGTAAATGTTTTAAATCCTCTGCTTTTGCAGTCATAATGAGTAGAAAGTTC ACTATAATACACCCACATACGCCCTTCTATTAAGCTGATTTTTGTAAGTGTTCACTCTCTTGTTACTTTA GTTTAAACAAATGTTTTTATTTCTTGTGGCTTCATAGGATTATATCTTCTGGAAAGAACAGATTTTTATA GGTGTATGATTTTTTGTTTGACCATTTTATCCCTTGGACATGTAGCTGGGTAGAGTGAATTCTTGGGAAA GAAATGATGGGGGGGGGGGGGGGAGTAATCATGCTTACATGTACATGTAAGTTACCCAGTAGAGATGAGT ACAAGATGGGCCACATGCAGGTGTAGTACACCGTACAAGTCAGCCAAAACAAGTCCTTTCCTACATGTAT CTGTATAAGGTTGATTACCGGTATGGAATAGGAGGGGGTTAAAACCAACCCCCCTCATGGGTGCAACCCA GTATCGAGAGACCGATGTTACCCCTCTTGGGAAGGGACGGAAGTGATCAATTAAGGAAAGATATAGGAAA TACTTGAAGGTAGATTGGCCATCTTGAAGCCTTATTTCATGTTGGCTCGCATTCAATCCCAAACAAATTT TGTTTTAAAGAATGAACGTCTTAGTAGTAATCTCTTCTCAAATACAGAGGTTCTTGACTAAATTTTTCTG AATATCTGCTTTAAAAAATCCTGCAAGATCTACTTATATTTCTCTTGTACAAAAGCAATCACTTTTTGCA AACTGGTGCAAGGCCTATGGAGTATGATTTGTGCATGTCAGTCTATGAAACCAGGGGCGAAAGTTTGAAA TAGTGACTGACATGTACAATGTAAGGCAAATCTTGATCATACAATAGATTAGTAACTTGATCCTTCAAAA CTTCATCAAGTCTAGGGCCCTGTCACATAATTTCCAATAATTGAAATATGTTAGCGTAAACATTACTTAT GATTCGTTGTGAGTAAATTTGTGTAATCCTGAAAAGTTATATAAATTGATATACAAGTTTTATGAAACAT ATCCCAGCTTTTGCTTCCTAAAATTTAGACTTTATGTTATATGTTTGGTTCTGTATATATTTGATATCCT TTATTATCAGTAAATGCCAGAAACTGCTTAAGTAAACATATATTTCAAAATTTTATTTATTCATCTTTTT TAAAGTCCCAAACCTCTATGAGTGGTCATAAAAAAGCCTTTACCTCTCTCTCTCTGTCAATGTATTCTAA CTTATTATAACGGGTGCCCTTTTGATCAAATTTCACCTCATTTTTCAGAATAACGGTTCAGTACCTTCTT TATATTCACCAGTATTGCATACATTTTGTAGTTTAGCGAGTATATTGGGTCTCATCAATGTACATTATTG TACATGTACGTCACTTCGAAGTTGGCTATACATGTATTTCATGTCATGCATCTAAAGCTTCAAGTAACTC CATAAATCCAATGTAGCATTGACTTTCAACTAATCAGAATCTCATAATATTTACCTGTTTGGAGCCAGAA GGACGTTAGCTCATATACTTAAACTTACCGCCCTGTTGGCTCTGAAGTCTTAATAGATGAATGTAGATTT TTTTTTTTCTTCTTCAGACTTGATTTAATCACAAATGTTTACACATGAGAGGTTCACCGTTACACACAAG GAGAAGAAAGTGCATACTAATTTGTGTATTTACAGTACACAGATTCACAGAAATTGAAAGCCCTACTTCT TTCATGTGGCCTTGGGAAATGTCTGATATGTCGAGACATAGTACCATTTCCTATATCAATTTATAATATT CTTGGAACTTCAGTACACGTACATGTACATGTACATGTTGTATAGGAAGTATCAGTTACAGAGTGGAAAA ATTCTTTGGCTTTGGTTCCAATAGGATATTGGCGTACCCAAGATTAATTTCCTTTGAATTCTATCACAAA TTGGTCGCCTAGACGTTGGTGGTTTGTGTAGTGATCTTTAATTGGTCTGAAGAACAAAATTGGCACCATC GCAGAAATGCTCATTGATAAGTGGGGAAAATACGTAGTAATGGTACATGCATGTGATGGTAGCTAAAAGG GCTTTATTTGAATATCACTTCTCGTTACATGTACATGGAGTTAACCACCTTCTTGCTCTCAGGTGACAGT ATGTGGGACACAGTGAAATAAGATCTCATTGGTTTTCAGAGGCATGTTTTCATGACACAATTATTGACTT AATGTTGTTAAATCATTCTTATAGCAAACCAAACGTATATGAGTTCTGATGATGATTGTATTTTGACTGT GATTCATGTGTTTGTAACATCTGATAAACACATTTATTTGTTTGTTTGTTCACAAGAGTTGCCATTTATG AGTACCATACAAGGGAGCTATAGTATCAGCAGTACAAGGGGCTATAGTAAGGTCAACTTTTGACATACAT GATGTTCTACACTGGCTACACATCTTCCCTGCGGTACAGGAACGAAGCTCTCGTTCCTTTAAAATGTTAA ATGTGTGATAAACCCGAACAGACGCTACCATTGCTTAATTGTGTTTAACCACTAGCTCTTAATCATTTCA CAATCAATTTATAACGAGAGCTTTGTACCTAGTCTAACCTCGTTTCCCGTTTTAGACACCAAATGTGGTT AAACGGGAGAGCCACAAAGTTTTTGCTGTTCTCTTATGCTGTATGGATCATGAGGTAAAGATCTTAATAA GTGGGTTTTAGTGAATTTATTTGATGACTTGAGTCACTCAAATCGTCATTTGCCTTGTCAGTCATAAATC AGGATTCGTTTTAAACTAGACCTATCACGTTTGTGTATTTCTTCTGTTTTAAACTTCTCTTCAGATAAAT CAAGAATTCACTGTATTTCCAAGATTTATTTTTTACTTCTATAAGTCTTATAGAGCAGAGAACATACTGG AAGTTTATATGATAGCTGCCTTTTGGTTAATTAAGTTGGAATTTTAACCATTCTAAAGAGATCTTACATT TCTTGTGCAAATCGTTGACTGACCGCAAGAAAGCCGTTATAGTCCAAAGCTCTTACTTACCGCCTTCTTG CAGGCAGTCGACGGTATTACCTACATGTATAAACGTGCTTGCCTTTGTGTATTGTATATTTCTTATTTTT AGTGTATGTCTATCAAGATCTCTTCCTGCATAATGAAGCTTGAATCCTTTAGTCCCCCCCCCCCCTCAGT GATGCATGCATATTAATGATACTATTAATGATTACTATTTTCAATGCAAGTTTTTCTTTTCTTCTCTGTG TACATGATCGTTAAAGGAATGCCTGCCTCAGAATTGTCAGGAAACTGGTACTATTTAATGTTATTTGTAA TCTAGTTTTTGCATCTTATTATTAAAGATAGGCCCTCTATACAGTACCGTTGTTTAGGTACTGAGTCATA CATGTATAACTACAGGTAATTCGAGGTGAAATTAATGCAGTTGATATAGCAAGATGTGTATATTGACCAT TGTTATAATGATATATGTATATAATATAAAAGCCTCTGAGATTTATGCAACAATAAGAAAAAGAGTAGAG TTTGCAATATTGTTGACTACTATTATTAAAGATTGGGAGTGTTTATCCCTTCTCTAAGAAAGGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds