Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030977402.1 PREDICTED: Strongylocentrotus purpuratus zinc finger RNA-binding protein (LOC576487), transcript variant X1, mRNA GCGCTGTAGTATCCAGTGCAAGTGCAGTGTGTATGCAGCATAGACATTTGTTCATGTAAATCTGTGATTG GAAGGAATGGCGTCAGGAAATTATTTCGGTTTTACCCACGGAGGAACGCAGTATAGTAGCCAGCCTCAGG CTACAACATACACTGCCCAGCAGCATGCTTCAGCTGCAGCAGCCCAAGGCACTGCACAGCTGTTCCCTGC CCAAGCCACACACCCAACAGCTGTCTATGCATCTACAGCAACACCTAGACAGACCCAAACAGCTACTTAC GACACAGCTTATGCCACAAGTCAACAACCTGGAGGTTATGGATACAGCACTCCCCAGCGCCAGGACCCGA CTCCAGCTCGTCAAACGACCCAGACATACCAGGATAGCACAGGGTATGGCTTTGAGCAGACTCCAAGCAC CGGAGCATTCCAAAAGCAGACCTACTATCAAGCCCCAACACAGCAGCACTCTGCCACGGAATCCTACTTC TCCCAGAGGGGGAAAATAGCTGCAGGAAAAACCGGTTCTGTGTACACCTCTGGTGGAGGATCAGGGTACG GCGGAGGAGGACATCAGTCCATGTCTCAAAAGCCATCCCAGCCCAAGGTGGCACCTGTTGTCACCTATGC GTACGCTGCCCAGACCACAGCTCCTACGTATGCTACCACCTCATCATCATCCTACTCTGGCCAGTCCAAG TATAGCGGAGGTAGTGGTAATAACAACAGTGGGGGAGGCGGGGGCGGCGGTGGTGGTGGAGGCGGCGGCG GTGGTGGTGGTCCCAACAACCAGTACTCGAGCTACGATGCAGCCATCTACTCTGCAGCCACCAACTATTA CCAACAGCAGCAGACTGTGAAGATGGGTAGTCAGTGGGGAGGAGGAGGCTACAAGGGAATGAAGAAAGGC CAGGGATTCCAGCAGCAGGGGGGTAACAAAGGCCCTGGTGGCGGCATGAAGGAGACCAAAGCACCACCAA AGCCTACTCAGCTACATTACTGTGATGTCTGTAAGATCAGCTGTGCTGGACCTAGGACCTACAAGGAGCA TCTGGAGGGTCAGAAGCATAAGAAGAAGGAATTAGCCAGCAAGACTGGGACTAGTGTCAACCTACCAAGC AGCAGGTCTGGGGTTCAAGCCTACCGTTGTGAACTGTGTGATGTCTCATGCACCGGTCTAGATGCTTACA ATGCACACATCAGAGGATCCAAGCATCAAAAGGTACTAAAGCTACACACCAAACTTGGCAAGCCCATCCC ATCGTCTGAGCCAGTCAAGATTGGTAACCAGGCCACCGCTGTTACCAATTCCACCGCTGGGACTGCCAAG ACCCAGACCACGCCTTCTAAGACTGCCCCCAAGACCGCTCAGCCTATCAAGAAGATGGTCACACCAAAGA TCACTTTTGTTGGTGGGTCCAAGTTGGCTACTACAGGTGATGCTGAGAAGAAGAATGAACAAAAGACTGC ACAAACACCTGCTGCTCCTGCTCCTAAAACTCCTACAACACCCGTCATTGCCCCGACTGCTGAAGATAAG GATGATTTAGACATGGAGAAGGACATCCTACCGGTCGGTGAGGACTACATCGAGGAACTGAAGAACGAGG AAGGCAAGCTTGTCAGCTTTAACTGCAAGCTCTGTGAATGCCAGTTCAATGACCCTAATGCCAAAGAGAT GCACATGAAAGGTCGCAGGCATCGTCTTCAGTACAAGAAGAAAGTTGACCCCAGCTACCCAGTGGACATC AAGCCGTCGGCCCGATCCCGCAAACTCCAGGAAGAGAAGCTGAGACGACAGATGGCTAAGGAGGAGTTCA TGAGGCAGAGGCAGGAGGAATTCCAGTGGAGAGAAGAGATGAGGCGATATGAAGAGGACATGTACTGGCG ACGCATGGAGGAAGAGCGCTACTGGGAGGAGCGAAGACGCTTTGAACAAGAGATGGAGTACTTTGAATGG CAGCGTCGCCGTGGCGTCCATCTGCCCCGCCCCCTACCACCCAAGCCGCCCGTCCCGGTCGATGCTCCGG TCATGCAGGTCAAGCGTACCGAGACAGAGATTGACCGTCATGTCATGTCCAAGCATGGCTCTATCTATCC TTCAGAACAGGAGCTACAACTTGTGCAGAACATGGTTAGTCAGATGGAGAAGGCATTGAAGGGCGTGTCT GACCACATTGCTGAAGAGGACCATCCTACACCACCTGAACCAGTCGTAGAAGAAACCAAAGAACCTGCCA AGACTGAACCAGCTACCAAAGAGGGTAGTGCAGCAGCAGATGAGAAGAAAGAAGAACCAGCTAAGGAGGC GCCCCTCCCACCTCGTGTCTTGAAGGGAGTGATGCGTATAGGTGTCCTGGCCAAGGGCTTGCTCCTCAGA GGTGCACTCAACATGGGTCTTGTTATCTTGTGTGCCGAGAAGCCCACTCGTACTCTACTAGAACGCATCG CCAATCTACTTCCCAAACATCTAACGGAGATCACAGAGGAGAAGTATGAGATTCGATTGTGCGTTGAGGA GGCCGGTCTGATCGTTACCAAGGAACCAGCCATGACCATGACGGTCTCCCTGACCTCCCCTGCCTTCAGG GACCAACCATCTCCTGATGCAGCCGATTCTGCTCGAGATCCTCCGGACGTCCTCTGCAGGCAAAAATGCC TTGAAGCTCTGGCTGCTTTACGACATGCTAAGTGGTTCCAGGCTAGAGCTGGTGGTCTGCAATCCTGTGT GGTCATCATCCGAGTTCTAAGGGATCTCTGTGAGCGTGTACCTACCTGGGCACCGCTACGAGGATGGCCT CTGGAGCTGCTTTGTGAGAGGGTGATTGCTAGTGCTGGTCAGCCCCTCAGCCCTGGGGATGCTCTAAGAC GAGTCTTTGAAGCCGTCGCTGGAGGTCTGCTCCTGCCAGGAGGACCCGGATTATTTGATCCATGTGAGAA GGATGAAGCTGATGCCTTGGCTCACCTAGCCCCTCAAGAATGTGAAGACATAACAGCTAGTGCACAGCAT GCACTGCGACTGATCGTGTTCCGTCAAGTCCACAAGGTGTTGGCCATGGAGCCCATGTATTCCCAGAATC GCAACTTCAACCGCAACCGACGTAACAACCGCAAGCGTCGCATGGAGGATTCAGAGGGTGGCGAGAATGG AGATGCAGAGGGCAAGAAAGATAAGAAGGAAGGCGATACCACTACCAGTATGGAGACAGGTGGCACAGAG GGTGCTGGAACAGAATAGAGGAACGCTGAGGGGGGCTACTTCACACCCCAAACTCAATCAAAGAGACTTC ACCTTGTATATATTCTAGTGACAGCCCCTTGCCCTCCTCAATGTTTATTACAATGAAGAAAGAGTACCTA CTAATGTGCTGGATTCTGATTTACTCCCCACTCTTTCCTTTACACTTGCTTTCAATCATGTGATGTACAA GTGTAGATATCATATATCCTTATTTTCCTTGATGTGGAAAAGCAAACTCAACAATTCTACTTGCACTTCC GTCTCGTTATTGTAAATGTTCATTTAAATGTCTAAAGCTGGCTTTCAAAATATTGAAAACGTGATAAAGT ACATCAGACCGTTGTTACCAAAGCCATATTGTTTGAGCTCTATCCATGTTTTCTAACTGTATATAGTATC ACTGTGACCTTGCTGAGATTTACTTGTTGTCCTTTGTAGCAAACAGGCTCTTCATTGCTCTTGATTACAC TAAATATGGAGGTTTTGTTTTGTAAATACATGTATGTTTTATAACAGATTCAATCAGTAATTGTAACCTG TTCTGATAAAGGGGATTTTTAAAGAAATTGCCTGGTAGAGCAAGGCTGTTTGTGATATGTTAAAGTCTTA TGGGGGATATAGGATAAAAATCATAATTACTTGTGTGTCTGGTCTAGCTGCTGGACGTTCTACAGTAGTG GGTGTAAGCCACAAAAACTAACAAAAAAGTAAAAAGAACTCTTGTGTTAAAGTCTCATTTTTAGATGTGG CGATGGATGAACATTTCTTCTGTACATGTCGTTAGTAGTAAGTCTTGAAGTAGTGTATTGCTAGATGTTT CATTGAGATATATTTTGTAATTGTCCTTCTTGTTATTTTATTTTTGCATCATTTTGTATTAGGTGTAAAT GATTAATTTATTCAATCACTATCCATATTCGATTGCTCTTGACATATGTAGGAGTGTTATTCAATTAATT TGTCATGATGTTGAAACAGGATTTGAGTTGAAAAGGAATCATGTGCACCGTAGCTTGAAGAGTTGTATCA CTTAATTGTGAGTGTTTGATTTCAAATTAAGATATTCATCACTCTCAATTAGACTTTTTGAAAGGGATAG AGTTTTATTTAGGCTGCAAACATTGGGTTAGGGAACAATTAAGCATTCTACTACATGTATATCAGATGTA ATCAGTTTTGAGTTATATAGCCATTCATTGAAACTAATTACAGTGTTTTTGTGCAAGTAGACTTCATTTA CAAGTTGTAGTCGAATATAACAATTTTCACAAGTTGAAAATCCTATACACATCATTGTAAATCCTTTGTG TGTTGAATGTGCATCCAATATTTTAAATTGCTAATAAACCTTCCTGCTACTAAATAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds