Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT122364.1 TSA: Strongylocentrotus purpuratus WHL22.104331.0 mRNA sequence TTAGGTGATATATCCAATATATGGCCAGAGTTGAACCAGTCTTTCTCTCCAGAGATTGATGAAGAGGCCA ACAGCTACTTCCAGCAGATCTACAACCAACCGCCCAACCCCATCATGTCTGTGGATGATGTTCTTCAGAT GCTTAAACAGTTCAAGGATTCACAAGTCACAAGGGAAAGGGAGGTGTTCATGTGCATGCTGAGGAATCTG TTTGAAGAGTACAAGTTCTTTCCTCAGTATCCAGAGAGAGAACTCTTGATCACTGCTTGTCTGTTTGGAG GGGTCATTGAGCAAGGACTAGTCACATTTATGGCTCTGGGAATGGCTCTACGCTATGTTCTAGAAGCCCT GAGAAAGCCCCACAACAGCAAGATGTACATGTTTGGCATAGCAGCTCTAGACAAGTTCAAGCTACGTCTC AAAGACTTTGCCCAGTACTGTACCCATGTTGCTTCCATTCCTCACTTCAAACAGTTCCCAGAGCATCTCA TTGAGTACGTGACTTACGGTCAGCAATCTATGGAACCTCCAGTCACAAGCAGACCACAACCAACACCCAC AACCACACCGGCAACAGTAACAACGACAGCATCATCCATACTGTCAACAACAAAGCCCACACCAGCAACT ACCACCGTGTCAGCTATCAAGCCAATCGCCAAAGCAGCTCCAAAGCCTTCCATTGCTAATACCACCAACA TCGACACCCTCCTGGTGGCCACACCCTCGGAGGAGATTAAAGAACCCTCAGAACAGGTCCAGGACAAGAT ATTCTTCATCTTCAACAATCTCTCTCAGGTTAACCTGATCCAAAAGTGTGAAGAAATGAAGGAGCTGTGC TCAGAGGAACACCTGGATTGGATATCCCGCTACCTGGTCCTCAAGAGGGCTAGCATAGAGACCAACTTCC ATACACTCTACTCCAACTTTGTAGATCAGATCAAACTCAATAAGCTAGCAGACATGGTGCTCAAAGAAAC ATACAGGAACATCGGGGTGCTGCTAGCATCCAGCAAGAGTGATTCCAACTTTTCAGATAGGACACTCCTA AAGAACCTTGGACATTGGTTAGGCAAACTCACATTAGCAAAGAACCATCCCATCTTACAAGTGGATCTTG ATATGAAAGCCCTTATCCTTGAGGCCTACCACAAGGGCCAGGCTGAACTGCTGTACGTGGTGCCCTTTGT AGCCAAGGTGATCGAATCCTGCACGAAGAGCCGCATCTTCAAGCCTCCCAACCCCTGGACCATGGCTATC TTGAACGTCCTGGGCGAGCTGCACCAGGAGCCCAACCTCAAACTCAATCTCAAATTCGAAGTAGAGGTTC TCTGCAAGGCATTCAATGTCACTATGGACGACCTGAAGCCTGGCATGTACCTCAAGGATCTAGAGATGGT CGGTCTCATCCCCCACAAATTGACAACTTCCAAGAAGTTCATGGAGGGCGGGGCCTTCGGTATCTCCGTT GGAATGGGACAGGACAACCCATCTTCATCAGTGGGTGGCTTAGCGGCTGGCTTAGCAAGTGGCTTAGCGG TACCCCTCCCTACCGTTCCCAACAGTTCACTGGTCGGCGTCGGCGAGCAAGGTATTGCTTCGTCAGTGCC GACACCCCCCACTCCGTCTTTGCCTGCCTCACAGGCACCCGTTCCTCAGTTCAGCTTCCAAGATCTCAAC ACCTCAGCCCTGACAGGGATTGCTCCTCTCACTACAGTCAACGCACAGTTGGCCATCTTCCAGGCCCACC CTCAGCTGCGTAACTGTGTGCGTCCAGCCGTGGAGAGAGCCGTTCAGGAGCTGGTGCACCCTGTGGTTGA CCGCTCCATCAAGATTGCCCTCAGCACCTGTGAACAGATTGTCAAGAAGGACTTTGCTCTTGATCCTGAG GAGAATCGTATGCGCCTTGCCGCCCATCACATGGTGCGTAACCTGACAGCTGGTATGGCTATGATCACAT GCCACGAACCACTCATCTTCAGTATCATCAACAACTTCAAACTCTCCTGCATAGCAGCCCTCAAGGGTGG TACTCAACAGCAGAAGGAGCTGATAGAACAGGCCGCATCTGTGGTTGCCAACGACAATGTGGAACTGGCT TGTTGCTTCATCCAGAAGTGTGCTGTAGAGAAGGCCATCCCCGAGATGGACCGGAGACTCGCCACCGAGA TTGAGCTCCGGAAGCACGCAAGGAACGAGAACCGTCGCTACTGTGATCCGGTCGTCCTCACATACCAGGC AGAGAGGATGCCGGAACAGATTAGATTAAAGGTTGGAGGAGTGCCTCAGGGTCAGATAGCTGTCTATGAG GAGTTTGCTCGCAGCATTCCAGGCTTCCTACCCACACCAGAAGCAAACCAACCACCGGGTTTTTTAGCTA AACTTACCCAGTCTTACGCTGTCGACGAGATCACCCAGATCTACGACAAGTGTATTACTGAGATCGACCA ACACTTACAGTTCATCAGTCAGGTTATGCCTCAGTCCCAGCATATCCAGATCTTACATGCCCTCCTGGAG TCTGTCATGGTAGCCAGGAACTCCAGGGAGATCGTCACAGCACTTGCTTGCCTGCAGAAGGCTGTTGAAG GTCTTCTGGAAGGCTACACCGTCAGTTCCCTTGACCCCAATGCAGCCTTGCGCTATAGGGATGCCCACAT CCTAGTTCTCAAGTCACTCCAAGATCAGCGAGCCTATGGTCCACAATGGACAAACAAGCAGGTCACCAGA GTCGTCTGTGAGACGAGCAGCGAGAGGAAATACAACCTTGATGCCATTGAACAGCTGTTACGAACACACC TTGTCAACCTTCAAACCATTGACATGCATATTGCCACATCCATGGAGAACGGCCTCAACTATGCAGCCGT GGGGTTCGCCATGAGCGTCGTCAAGCGATTCCTCATTGATGAGAAGCAGAGCAATGTCTTGAATGAAGCT GATCTCTACAACACACTCCATGTGCTGGCTAGGATCGCCACACAGAGCCCGAATCCACCAGAGGGTTTGC CCCAGTTGATTGAGCTTGTCAGGCAGAATCATGACCCGGCCTTTCTAGACAAGGCACCCGGTGGTCCCAC CTCTATGATGCACTCGGGCATCTCCCAGGCTCGTGAGTTTGATGACCCGCCAGGCCTGAGGGAGAAGACA GAGTACCTCCTGAGGGAGTGGGTCAACATGTACTACTCGCCGGCTGGAGGCAAGGACAGCACCAAGGCCT TCTCAGCATTTGTCAATCAGATGCACCAACAAGGCATCCTGAAGACGGACGACCTCATCACTAGATTCTT CCGCCTCTCTATTGAGCTTTGCGTGGACGTGTGCTACCGAGCCTTGGCAGAGCAGGTACACAGCCAGGCA CTGACGCGAGCAAAGTGTTTCCAGACCCTGGATGCCTTCGTAAGGCTCATTGCCCTGCTGGTCAAGCACT CCGGAGATGCTACCAACCCAGTCACCAAGATCAACCTACTCAACAAGGTATTGGGAATTGTAGCAGGAGT GCTACTCCAGGATCATGAGGTACGCCAGACAGAGTTTCATCAGCTAGCCTACCATCGTATCTTCAGTATG CTTCTGCTGGAACTCAATGCTCCAGAGCAGATCCTAGAGGCAATCAACTTTCAAGTCATGTCGGCTTTTT GCAATGCTCTTCATGTACTGAGACCGTCCAAGGCTCCAGGCTTTGTGTATGCCTGGCTGGAACTGATCTC ACATCGTATCTTCATTGCTAGGATGCTTGGCATGCTTCCACAGCAGAAGGTAAGACTGGAGGGATGGCCA ATGTATGCAGGCCTACTGACAGGTCTCTTCAAGTTCATGACACCATTCATGCGCAACGCAGAACTTCCAA AGCACCTCGCTCTGCTGTACAAGGGTACTCTGAGAGTGCTGCTGGTGCTTCTTCATGACTTCCCAGAGTT CCTGTGTGACTACCACTATGGCTTCTGCGATGTGATCCCACCAAACTGCATCCAGATGCGCAACCTGATC CTGTCTGCCTTCCCTCGGAACATGAGGCTACCTGACCCGTTCACGCCGAACCTCAAGGTTGACATGTTAG CAGACATTGCCCACCATCCTCGCATCCTGACCAACTACGTCACTGTCATCCAGCCTGCATCGTTTAAGAA GGATCTCGACTCGTACATCAAGACCCGTAGCCCGGTCACGTTCCTCTCTGAGCTGCGCAGTCACATGCAG GTGTCCCAGGAGCCTGGCCAACGCTACAACGTCTCCCTGATGAATGCCCTGGTGCTCTACGTGGGCATGC AGGCCATCAACTACATCCAGAGCAAGGGTAGCACACCCTCTATGAGTACCATCACGCACTCTTCCCATAT GGACATCTATCAGAACCTGGTCGTGGATCTGGATACAGAAGGTCGCTACTTGTTCTTGAATGCCATTGCC AATCAGCTGCGGTACCCTAACAGCCACACCCACTACTTCAGCTGTACACTCCTCTACCTCTTTGCAGAGG CTAACACAGAGGCTATACAGGAGCAGATCACTCGAGTGCTACTGGAGCGTCTGATCGTGAACAGACCCCA CCCATGGGGACTTCTCATCACATTCATTGAGCTCATCCGCAATCACCACTTCAAGTTCTGGAGTCATGAG TTTGTGCACTGCGCTCCTGAAATCAAGAAGCTGTTTGAGTCTGTGGCTCGTAGCTGTATGCAGCAGAAAG GCACCGCCCAGCCAGGCATGGGGAGGGATAATGCAGAAGCACATGAAACTTAACCAGACCCTACCAAAAA CACAAAGGAATATTGGACGATACCGTAGTAACTTCATCCTATCCTTAGCACGATGAGCAAGATGTTTCTC CCAAATCTTCCAGTGAAGTCCAACAAAGACAGAACCAAACCTCAAATACCTGTATTGATGAGAATCGTAT CAAAATGTGTCAAAGGATACAAGGCCATTGAGAAACGGATATCTGTTGGTTTTTGTAACTATAGCTGAAG GACAAGTCTTTTTATTATGTTTAGATCCTGTTTTCAGAAGGATTTTGTATTATCTGGACATAACTATTAA AACAGTACAGGGTTTATCCCACCCGCGTGTGTATTACTTTTGAAACTCCAACGATTCTGTTTTACTTTCT TTGTTTACTTAGACCATGAAGCTGAAAAATCTTGTTATCAAAATTCATTTACATACAAGAAACCCTTCTG ACTGAAGACAAGTATGATATGAACATGGCAAGATTTCATTTAAAACATGGACTTACACCAGTAATGTGAC TGTTTACTTTACGTTGATGCTGCACAAGTTGTACCTATTTTCATGTACACAATCTTGTTTTTTGTCAAAA AATTATGTGATCATGCAAACCAAATATTCAGATTTTGTTATAATTTCTTCAAGTTTAATTGAAAAAGAGT GATAAAAAGCACTGTAATATCTCAATGAAAACTGTTTCAATGCGGTCCCCAATTTTAGTCATGTAAGACG AAAAGGGCTTAATGATGACTCTAAAAATATCTGGTTCTATTTTAAACAGTTCAAAAATGAACAAAGCACT ATTCATTACAGCAATAGCTTAGTTGCAACACTGTACTCGCAGACTGAAAATAATTGTTAGTCCTCTCCCA ACCCCATTTTCTTCGCTGTCAAACAAAGTGTGTCTTGTTGTGCCTTAGTTGTTACCAAATCCGAATCATA TCATTCAAGTTGACTAAATTTAATTTAATACTCTAGGTGAGACTAGAGTGATAATATTACTAATAGCTTA ATGATTTTTCCTTGGTACAACTATTCCTCTCAGTATTTTAATTGTTACTAAATTGTATTCATTGGCATTG TGTATGTTCATAACCAAGAAATAGTTGTAATGGGATCATAGTGCAGTGAGTGCTCAAGTTGATGGACTTT GCTGTGTGGAAGAGACATACACTATTTTTTGTTTGTTTTGGAATAGGTGTATAACTTTGGTGTATAAGGT GTATAATTGCCAATTTGAAGAAGGTTGGTTGCCAATTTGACGAAGATCAGTTACCATTCTTTTGCCCTTG GCCCTTATCTTCAGTATTTACATGGTGATTGTTTTTTTTAACACACATACATGTATGGTCTACTATTGTG ATAGTTCAATCATTTTGTTGCGATTGAAATCAAAGCAATCATGGAATGCTTTCAGGTTGTACCTGTTTCA CGTTACCACATCATAGCATTATTTATTGACTTGTTGCAGCCACATGTGTTGTGTCAACAGAGTTGTTGGC TTCAGCTGTGCTGGTCAACAATCAATATTGCTGGCAACAACACAAAACCCATTGAATGTAACACAATGGT CTACCAATTACCTGACAAAATAATTTGTGAATAGTATGTTACATATGGTAGAGGGATTGCTAGTATATAT AAAATCAACCTCATTTGATAGGTAAACGGTTAAGAAGTAAGAAGAAAATAAAGGATCGCATTAAACCCTT GCATAGGGCTCACACAGGACCCTGGTCCAACTTTGGGGGGTTTTTTTCTCCAATAAATAGTTCATCGAAA GCAGAACAAATTATGATATAGCAAGCTTTGTCAAGCTTATTGAATGAACAAGTATAATATATGGCTAGCT TTGATTTATTTTGTAATTTTATTGTCATAAAAGTGGAGAATTGGTGTATGCATTAAGCCCACAAATTGAA AAGTACAAATTTGATATCTTTATTTTTTGTTCCATTTCAGCAATAGAAACTACATTGATCTATTTGGAGA TTTTGGGATGAAGAATTCAAACGCTTGTACACCTTGCGCCAAAAAATAAACCACAAGCAAAAACTTGATT GAGTAAAAGTGAGAAAAAAGGATTTGGAGAAGGAAACCTATGCTTTATATATTCACACTTGTGCATTACT AAGATTGTATATAATAATATGTATGTAGCCGACATTCAGGAAAGCGAAAAATGGATCAGTTTGTTGAAAG ATTACGGCAACTCATCCTGCCGAGTTGGTCTCGGTCACAGTGGTAGTGTATTGCGATGTACTTTCATCAT AGATTTAGTCATTTCTAGTTGTAGTTTAATGGACTGCGTCATTTGAAACCAATTTGGCTGGATGAGAGGC CAAAGATTTGAACCATTGTATGTTGTAATTATTTGTAGTTAAAAGTGATGGGTATTGATGTGAATAAGCT GAAATGCAAGGAGGGGTGGTGATAAGTGTAATTAGGAAATGCTTGTACTGATGTCTTATATGTGTTTTCT GCAAATATTTGAATAAAAATAAAGGCATGTATATGAAACATGTAAAAGAAAGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds