Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT111728.1 TSA: Strongylocentrotus purpuratus WHL22.651538.2 mRNA sequence CTCTGGATGAATCCATGACAACCTAAACAGCTTACGAGAAAAATGGCGACAAATATCTTGTTTTGACGAG AAGAATTGCTTCAAACTGTATAATATGGATAGAAATTGAAGTTATAATTTGTAGAATTTGATACTGTTGC ATCCAATTTCTTGCATGAATTCTTGAATGTGCTTAGACACATACCGGTACCATGCCTACTGGATTGGAGA AGCAGACCGCCCAGCGGGCAACAGACTGCGGGGAAACACCTGCCTATGACAGCAAAGTGACAGCTCCCAG GAATCCAAAACTTATACGAGGGCCTAAAGAAGAAATAAAGATGACCCCTTCTTCATTTATGAAAGAAATA TCGCAAACAACAGAGGAAAAGCTGGCAAACACACACTTGATGCACATACCCAAAATCATTGAGCTTATGG ATATGGGTGATAATACTCACCAAAAGTTCTCCAATGTTGATATAGATGAGCCTCTGTTCCAGCCATTCCC ATCAGAGGTCACATTCCAGCAGTTTGAGCCTCACATCATCTATGAAGTCCCTCTTCTACTCAGAAATAAT GACAAGGTTTCCAGACTGGTCAAGGTATACCAAGCAGACTCACCGTACTTCAAGATCATCAGTCCTCCAG ATGTGACTACCAAGGTTGCTCCTGGTATGGCTACCATCTTCAGGATACAGTTCACACCATCAGAGAAAAG GGACTACATCCACGAGCTAATCTGCATGACGGAGAGGGAGAAGTTTGTAGTCCCGGTGAAGGCCATCGGA GCCAGGGCCATGCTGGACTTCCCAGATGAGGTCAACTTTTCAATGTGCCCGGTCAAGTACCCTAGTACCA AGACCTTACTGGTCAGGAACATCGGCAACAAGGAAGCTCACTTTGCTCTCTATACTTCAGGACCATTCTC AGTCTCCCCAGAAAATGGGTCCCTGGCAATTAACGACAGCCTCCAAGTGGAACTGACCTTTCAACCTATG ACCGTCGGAGATCACAACGATAACCTGGTCATCAACTTTGACTCAGGTGAAGACGTTGGTGTGAATCTCT ACGGAGGTGCTTACGACGCCAACGTGCGACTTGACAAGAATTCACTGAGGATCGAGAACACCTACATCTC CATGGCCAATCAGAGGACAGTAATTGTTGCCAATCGCAGTGATGTCATCGTACACTACAAGTGGAAACAG TGTGCTACGGCAGAGGAGGAGGAGCAACAAAAACAAGGATTTTTTGGTCACATAGAATCCGAGGAGTCAA CAGAGCATGATGCCTTCCTTCAAGAATGCATCATGGACCCTACTCTAAGGGATCGTATGGCTATCCTCAC ACGCACGTTCCAGAACAGACGCACGCTTGTTCGAGGTGACGAACTGTTGTTCACGGACGATGCCTTCAAC ATTATGCCCCAAGAGGGAGACATTTGGCCTAATTCAACCTGCGAGATCAACGTAGTCTTCAAACCTACCG TGGCCAAGGCCTATAACCAGATAGCCTATTGTGACATTGTCGGTCGTGAGACCAGGCTCCCGCTCAGACT AAAGGGAGACGGGATCGGACCGCAGGTCTTCTTCTCCTATGACACCATGAACATGGGACACATCTTTATC AACTCGAAGCATTCATACGAGGTGGTGCTTGGTAACCGTGGGGACATCGATGCTGCCTTCCGCCTGGTGC CCTCCGACTCCACCTTTGGGCCTTACTTCAGCTTCTCCCCCAGCTCCGGGGTGCTGGAGCCAGGAGCCTT CCAGGCCATCGATGTGACCTTCTCCTCCCCTCACCTGGGGGACTTCAGTGAAGACTTCTTCTGGGAGGTG GAAGGGCTACCGTACCAGCACAAGCTCAACTTCAGGGGCTGTGTTATAGGACCCACCTTCCATTTCGATG TCCCCCGCCTCAAGTTTGGCACCATTTCTTATGGCTTCAAGAGCACCGAGGTAGCCACCTTGGTGAACAC GGCCCTGGTACCCATGGGTTTCAGCCTGAGAGTGCCTGGGGACGGGGAGGGTGATGTGGTGTCTGCTACC AGTGGTGAGGTGACCCTGGGGAGGTCCAACCTCAGCACCCCTGCCAGGGAGTTCCAGATCGTTCCATCCT CAGGCACGGTGGACCCTCAGAGTGAAGTCAAGATTGAGGTTGAGTTGACTTCCAACTCCCTCAAGAAGTA TGATCTTGCCCTTGTGGTCGATGTAGACGGAGTGGGACAGGAGCTGCTCTCGCTACCCATATCAGCAAAA TGTGTAGTGCCTTCCATCTCTGTGGTAACACCAATCCTAGACTACACCCGCTGCTTCCTGAACCATCCTT ACGAGCTAAGCGCGAGGCTGTGTAATGACACTGACCTTCCTGCTAAATATGACCTCGTTCCACAAGAGGT AGATGAGATGAGCCCTATGCTGTTCAGCAGTCCAGAGCCGACAGGGATCCTACCCCCTCACACCACCCGC CGTGTACCCCTAGTCATTACCCCTCAAGGACTGGAGGAGCTGGAAACCTATGCAGAGTTCAGTATCTTTG GTAGCATGGAACCTCCTCTGCAAGTGGTGTTGAAGTGCATAGGAGAGGGGCCAGTGGTCCACGTGACCCC TACTGAGATGGACTGGGGTCAGACCCAGGTTCTGAAAGACATCTCCAGGATCGTGACCCTGTCCAACGAG TCTCTCATACCAGCCCCATTCACATGTCACATGGTTCGTCCCAACACCTCGTGGAAGGTTGAACCAAGCG AGGGCGTGATCCCACCAGAGGATACTGTGGAAGTCACACTCACTGTCAACCTTGATGATTGCATCAGGTT CCAGGATAAGCTGGCCATTGATTTTAAGGATAGCCAGACGAGGATCATCAAGGTCCAGGCCTATGGTCAT GGGTCCACCATAGTCTCGGACCCACCTATGACCCCCACCATTGAGCTAGGCCATCATTTCAGTAGTAAGC CCAGCACAAGGACCTTCACGCTGACCAACAAGGGACGTCGTCATCAGCAGCTATTCTGGACCACAGAGGG CTTTGCTCCGATCAAGATCAAGAGCAGAGAACCAGAGTACAACCCACTGGATGTCAAGTACCAGAAAATG CCTCCTCCCGCTCCACCTCCAAGACCTGTGTTCAGCCTGACGCCCTCTAGGTTTGAACTTGAGGCAGGAG AGAGTATTGAGGTCCATCTTGAAGGAGCAAGCTCAGAACCCAAGACAGTGAAGGAGAGGATGTTATGTCA TGCCATCATCGGCAGGACCAGTGGCAAAGAGAAGATCATGAAGACAGACATCAGTATCACCTTCATCAGC CCTGTACTTGAGTTCTCCTCCAAGCAGGTGGCCTTCAGAGTAGATAAGCATCCTGATGATGTCCTGACCA TGCAGTACAATGAACTGACCATGACCAACGTGTCGTCACTGCCCCTGCATACCACCGTCCAGCTGGAGAA GCCCTTCCAACTAATTGAAGATGGGATTGAAGCCCTCTCCTGTCTGGAGGTGCCTCTGGAGGTTGGTGAG AGTAAGCTGATGACCATTCAGTTTGATCCTGCCTATCAGAATGATTCACACAGCCGTATCGCTGAGAAAC TGCTGACTCTCACATACCTAGAGCATCCGCACACTGACTACGTCAGCCTGCGTGGCGAGGTCTTCTTCCC CAACCTGACCTTTGAGAAGATGCAGGTCAGCTTCGGTTGCATCCTCAACGACACGGAGGTCACTCGCTAC GTCAACATCACTAACAACAGCCCCATGGCCGTCAACTACCGCTGGTCTTTCCTGGAACCAGAGACGCCCA TCATGCTCTACCCCCTGCCAGTCCCTGCACCTCGAGTTGAGCCTGTGGAAGCAGAGACACATGTAGCCTT TGAGGAACCTCTCCTTGGTGATGATGATCACCAGATGGAGGAAGGTGAACAGACAGAACGAGAGAAGGGT GAAGGAGGAGCAGAGAGTGGAGAGGAGAAGATGGATGAGATGAAGAATGCTGACGACCAAGCACCTCCAG ACAACGTCATAGAGAAGCTGGACATTCAGATCCTCTCTCCAAAGCCTCCCGTCGATGAGACCGACAAGGC GACCTTGAAGTCCATCAGCCTTGCCGACGTGACCTCCGAGAAGGAGAGCAAGAAGGACAAGAAGTTGACA GCCAGCAAGAAGAGCCCTCGCAAGTCGACGGCAAGGAGCGGAGGCAGCAAGGCAATGAGTAAGACCAGTA TCAAGAGCGAGGACAAGGCCAAGCAGGATGATGAGGTTGCTACAGTGGACCAGCCCCTGAGTGACCGTGA CCCTCCAGTCGTAGAGGATGAGGTACCGACTGCCCGAGCTCCTAGCCCACTCACAGCTCTGAGGCCTGGT ACAGCAGCCAGGCAGAGGCTCAACAAGCTCCAGTACATCCAGGCCATCACAGAGCCAACTGCTGTCGGCA TTGAAGAGGTGTTTGACATCCTACCCTTGTACGGCACCCTGCTCCCTGGCGAGTCGGATACTGTGACCTT CACCTTTTATGGTCATGCAGAGATAGGGTCAGAGGCTAAAGCCCTTTGCAACGTGGAGGGTGGACCCTGC TACGAGCTTGACCTGCAGGGGGAGGCATCCATCGTCCAGTATGAGTTTGACCTCAAGAACATTGATTATG GCAGACAGATGTATGACCACGTCTGCATGGCGGAGATCACCCTGAGGAACACCGGCAAGGTCGAGTTTGA CTTCCGCGCCCTCAACATGGACCCATCCACCAGCAGTCGACCTCTGCCAGGGGTCCCCGTCATGGTACCT CACACCGGCCATGTGGAGGCCTACAGCGAGCATAAACTACTGGTCAAGTTCCTGCCAGGCTACCCGGAGA AGTTCCACAAGAGCTTTGAGATCCAAGTGGCCCACTTTGAGCCTGACTCCATCAACCTGTGCGGAGAGGG TGTGTTCCCACGGGTCTCCCTGGACCTGCCTCGCTTCCCCGATGAAGAGGGGCTCTACTGCTCCCTCATG AAGGAGGCCAAGGAGAACCTAGGGCGGGACATCAAGAAGAAACCCTTGATCCAGTCTGGATCCCCCGTTC CTTCACCTACTCCAAGGGATCCGTCCCAGGAGGATGCAAAGTCCATCATGTCACTGCAGAACGAGTTCCC ATCTGAGTTGGAATTCCAGTTGGAGGTTGAACGATTGCTGGTCAAGGAGTTTGCCATCGAGTATCAGCAG CAGAACGTCATGCTGGACACTGACCGGTCAGCTCAAGCTCTGGCCACTACAGGAGTCTTGATGGCCAGCG TCATGACGTCCAGGAGCAAGAAAAACGTCAAGGCTAAGGCTCGCCTGCCAGACTACATGCTTGATTTTGG CTACGTAGTCCTTGGCACTGTCCGAACACACATCATCCGAGCCACCAACACCGGCTTCTTCCCCGTCTCC TTCTCCGCTGACCGGATCTCTCTGGCCGGAACCGGGTTCAACGTGGAACTGGACCGGGTGCGTCACCTAC CAGGGTTCCCAGACCATGAGACGGTGGACTTCAGGGTCAGCTTTGACCCCCTTGGGTCTAACCTGGGACT GGGAGATGTGGAAGCGTTGATACCTGTCAATATCATCACTGGACCATGTGTGTTCCTGCGGCTGCGTGCC TGTGTCACTATGCCCGACATGGAGATCTCAACGGACTGCCTGGAGTTCGGAGACGTCCAGTGCGGTCAGT GCAAGGTGGTGACCATCCAGCTTCACAATCACAAGGAGGTAAAGTGTGAATGGTCATCACTACCCACTGA GAAGGAGAAAAAGCTGCTTCTGGAGAAACAAATGAAGGTCGACAAGCACATGCCTCTTCATCTGAGACGG AAGCTGAAGCCTGCGAGGTCCATACCTCGTAACTTTGAGATGATGCCCCCTACTGGTATGCTGCTGCCAG GTCAAAGGGTCAATGTACAGGTCAAGTTCATGCCTACAGAAGAGAAACTCTACTCTGAGCGTATCTCCCT GCGCATCAACCAGAGCAGCCAGCGCCTGACCATGATGGCCACCGGCATCGGCCTGGAGCCACGGCTGGAG CTCAGTCAATCGCTGCTGGAGTTTGGACCCATCCTACCACACAGCGCAGGAGATGAGAAGGAAGTGATCG TCAAGAACCCCTGCACCTTCCCCATTGAGTTCTACTCCTTAGAGTTTGATAAGCAGTATCTGACTGAGGA GAAGATGCTGCGCCTTATGAAGGACTATGACGAACACGGCACCCTGCTCCTGCCTCCTCGTATTCAAGGC GAGAGGCTCCCTTCAGAGATCCTGGAGTTCTACGAGGAGCAAAAGAGACGTCTGGAGGAGGAGGAGGAGA AGGAGAAAGCCAAGGTGGAGGCAGAGCTGGCAGCCAGAGCTACGGCTGCTGCTGCTATAGAGGGAATGAA AGGAGAAGGAGGTGAGGAGGGCCAGACTGCATCCCAAGCTCAAGGTGCATCAGCAGCAGCAGGAGGCGTT GCATTCACCCAGCCATCTACCACCGGTGCTGCAGAGGATGGCACGGGACAGGATGGAGAGAAGGACAAGA CAGAGGGGAACAAACAGGACGAGGATGACACACAAGACAAAAAAGACTCTGCCAGCACCGTTGGAGTTGG TGAGCTGATCGAGATCACCCCTGTCTCTGCATCCATCGCAAGGCACCTTGGCATTGACCTGTCCCCAGAG GGCAAGGCTGCCATGAGGCGTAGAGGGCTGGCCTTGGTGGTCCATGGAGCACCTCTCGCTGGCAAGACGA CCACATCTATCGCCTTGGCCAAACACTACGAGGCTGCCCTTCTGACTGTGGACAGCGTGGTACTGGATGC CATCTCTAACGGCAACACCCCAGCCGGCTTGAAGGCCAGGGAGAGGTGTGCCATAATGGCCCGAACCCAG CTGGCCAGGGAAGGGGATGGCATTGAGGCCCAGGCCCAGGGTACGGGCGGGGCTCTCAGCATGGAGGCAG TCTATCAGCACACACAGGGACTTGGTGCTGCCTCAGCTTCTGTGATGGGCGGCGCCCATTCTGTCATCAG TAACCGCAAGACCAGCACCATCTCCGGCCACAAGCCTGCGCACAGCATGGTAGCGGGCGAGGATGGAGCC CCAGCCCCGCCCCCGCCCAAAGCCGAGAAGGCGGACAAGAAGGACAAGAAGGGGGCTAAGCAGGAGGGTG ATACCACCACCCAGCTGTCCAGCAGCCCCCCTCCGGCCGCGCCCATTGCTAGAAGGTTGAGTGTGAGTGC TAGCGTGGCTGGGGAGGAGGGGTTGATGAGCTGTATCTTACCTGAGGGACTGCTGGCTGAGATCCTGGCT GAACGTATGCAGTTGAACGACTGTCACAAGGGTGTGGTCTTTGATGGCTTGGAGACACTCTTCAGTCCTA ACCAGACTGCTACGGCAAAGGCTCTCCTTGGGGCTTTCAACAACAGGAAGTACATCTACTTTGTCACCCT GAAGCTTGACCAGGTGGTCCTACAGGCCAGGGAGAAGAGACTACAAGAGGAGAAAGATGAACGTGAGAGG GAGGAAGAAGAGGAGGAGAGGCAGAGGTTAGAGGAGATGTCTGAGGATGAATACGATGCCCTGACTGAGG AAGAGAGAGCTGCCATCGATCGGAAGAGACTCAAGACCAAGAAAGAGAGGCTCCACAAGAAAGAAATGGT GGAGCGTCTTGAGAGGGAACGAAAGGAGAGGGAGCTTCATGCCTTGATGGAGGAGAAGAAACTGGAAGAT GATAAAGGCAAGAAGAAGAAGGGTGCCAAACCAGGAGACAAGGATAAGGATAGCACCAAGGGAGGACCAA GTGGAACCGCCCAGGCTAAGAAGGGACAGGATGGCAAGGTAGCCATGTCCTCCAGCCAGGCAACCATCAG GAAGGGGCCCCCTGACCCAACAGCTCCATCAGACCACGCCTTGAAAGGGGTGCAGTCCGTTGCCACGGAT AGACCAGAGTCACATGGTACAGCAGGCAGTGATCAGCCCCAAGATGAGGGAACAAAGAAAAAGAAGAAGG AGAAGGGCCGTCCCATTTCCAATGAGGTGGCGGTAGAGCCTGAGGTTGAAAGAGACCCTGCTAAGGAAGC TGAGATGTATCTGACTTGTCGCTTCAAGGCCTTTGAGCATGGCATGAAGGACATTGACAAGATGCTGGCA CGATGGGAAAGGACC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds