Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT109270.1 TSA: Strongylocentrotus purpuratus WHL22.59629.0 mRNA sequence TTTTGTCTGATGCGGTTTCGAGCTCCGTTCAGCTGTTAATCGTCGAGCGCGAGACAAGTTCACCTTCTAC ATGTCTAAATTCTGTTTTCACATAGCTAGACGCTGTACAGTTGCGAATACGACAGCTAGGAACAGAGGCC GAGCTGAGTGAACTTTTGGTCTGAAAGCATTCAAAATGATTATTTTCATCAAGAAACCGGATGGCAATGT GCTCGAAATTGAAGTTGGACCTAAAGCTGTTGGTCTAGAATGTCTAGATTTGACATGCTTGAAGCTGAAC TTGGTCGAAGGGGATTACTTTGGCTTGCAGTTCACAGCAAAGAAAGGAGAGAGGCACTGGCTGAACCTTC GAAACACCATCACCTCACAACTTCCCATTGGATTCTCACAACCTATCCGCCTGGACCTGAGGGTGAAATT CCATGTTGAACCACACATCCTACAGCAAGATATCACCAGGCATCTGTTCTTTCATGATGCCAAACTCCTG GTAAAAGAAGAGAAGATAAAGGCAGCCCTCAAAGATGCTGCCCGTCTTGCTGCTCTCTTCACCCAGGCTG AAAAGGGTGACTTTGGCGCTAGCAATGATGTGGAGCTGCTGGCCGGGTACTTTCCCCAGTTTGCAGACTC TGAGGAATTTAAGGTTACGGCCCAAGCAGAATATGCCCGTCTACGTAGCATGAAGGTGGAACACGCACTT CTCTCTTTGCTCAGGGAAATCTGTGAAATGGATTCTTACGGATTAAATACCTTCACTGCTAAGACCTGCT CCGGCCAATTATGTGAAGTGGGTGTCGGGGCACATGGAATTCTTGTTACTAATATTGAGACGCAGGATTG TGTGAAGATTCCTCTTTCATCTGTGAAGCGGTTGTCAGTTGAGAAGAGAGATTGCCAGATGCACTATGAG CTTGACGATGGACATAACTTTACAACAGACAAGATGGAACTTACTCTTCACACCAAGGAGATTGCTGAAG GGCTTTACCGCTCCATCACAGAGAAAGTTGAATTCTTCACAAGTGAGACCGTCAGCGAACCAGTCAAGGA CCAGTTTGTTCGAGACTTTCGTGGGAGTATTGTCTCCTTCTTCAACATCAATACAGACTTGGGGAAGAAG TATTCTTTTGATTTGCGCAGAACACAACAGGAGGTCCATGATGAAGCAAGAAGGAAACTTTTCAGGATGG GCATCTCGACACAGTCTGCAGATGCCGACTTGTCCTCCCAAGCACACAATAGGCAAGAAGGCACTAATCA GCTGGAACAGGAACTTCAGATGTTTCGAGACGCTGTGACATGTAAAGTCTGCATGGCATCCCACATGGAT ACAGTACTTTTACCCTGTGGCCATTTTCTCCTGTGTAGCAACTGCGCAGGCATGGTTTCCTCATGCCCTT CGTGTCGGTTAGACATTGAAGAAAGGAAGAAAATCTTCTGGGACAGACCTATGAATGTTTGCTAGAACAA GCCAAGCAGGTAAATGTATATCATATACATTGTAGGTGTGTAATGTATGTATGTAGAAGAACTCTGAATC AGTATTACAAAGATTGCCACATTTAACATGTGTTTAGAAAAGATTGAAAGAGCCGTAACTTTGACATTTT CCATCGGAGGTATGTTGTAGGATCCAATGCTTTCTGTATGTAATTGATTGATATTAGTAATCCTTTGGTT CAACGCTGTAAATGAAAAGAATAAGCTTTGTTCATTAACACCAGAATCAGAGTGAATGTGTAACTGTAAC ATGATGTGTTACTGATTTGACAGCGAGTTATTCCTTATTTGTACATTTATTGTGTAGATGGTATACACAA AATTTGTTGTACACTAGTGGACTAGGCAAACTTGCTTAGTGAAGTTACAGTAGCTATAGTTTGAATTGTC TATACTAGCAATCTTGTACAGTTTTTTGATGGAAACAAAAGAATGCCATTGCATTCACTCTTATTTGGAT TCTAACTTATATATTGTGTCATTTGTGTGATCAGATGTCGATATTAAATTTTGTAGATTATCAGAAAAAG ATTTGAACATGTATTTTTGATCGAAAAGGTCCACACATTTTTTTAAAGGAGAATGCCTTGAATTGTAGAA AGGAGAGAACAAAATATTTTTGTAAATGTTTGATAGCTAATAAGAAGTTGATACATATGCTTAAGTCAAC TCTTTAGTATTTTCAGTCAAACCAGTGCGTTGCATACTCCGATTGATATGTACATGTATGCCACTTTTTT TTCTCCTAAGTAGTTAGTACATTCCTCTAGTTCATCCGCAGTTGCCGGAATTTCTTTCTGTGTGTACATG TGTCCGTTTTAGTTTTTCATATTTTGCAAGAGATGATTTTCTTGTAACAGAATTAGAGCTTTCTGTGTGT GCATTCCAAAATCACATCAGTTCAAGTTATTTAGATTGTGCAATAATGTGTCTATGTAGAAAACTGATTT ATTTTCCTTCCAAAGTGCTGTACAATTTTATCAGTGTTTGTCTGTTTGATGGTTGTTTTTACATGCTAGA GTAGAGGTATATTTCAGGCAAAACAAAGCTACCTTTCCTCCCAGATTGTTTTGTATTTAATATGTTTATC CAGATGATTCACATCAGTAAAATGGGTGTAAAATGTGACAATGTTCGTATTTTTCATGGGGGGGGGGCAT AGAGTTAATAAAGTTTCAGTGATTCAAAAGCAGAAACAAGGTGATTCATTAGAGTACTTTCATTTACTTA TGGAGTTCCTGATAGTGTTCAAATAAGTGATACCCACGCAAAAGAGGTACATTGTCATTCACACATATTT TGCTTGAACTCTTTACCTCAGCCTTGCCATACATTTTCAAGTAAAGATCTATGAATTATTTATTTCTTGA TTAAGACTGCGATCTACTGTTTTGTTTTCTTTGTTACACAGTGTACTTATATTTGTGCAAATGTAACGCA TTCTTCCCTTTTCTGTGTGACATCATTTGTCTTAAAATCATGTTCTCTGATAGAAAGAGATTTTAACTGT TGTATGCAAACTTGCAAAGAGTGGTGCAACTTTTATTTTAGTGTGTTATTAAATGAAGCTACGTGTTATG CTATTGATATATTGTTTTCAAAGAAATGAAAGTCCTTCAACATCAGTGTGCCCATTTATCGGCATTGAAT TTACAACGTTCATGTTCTGCCAAAAGTATGTCACACATTATTTTATCATTTGATTTACGGCCCTTCAAAT AACTTTATTTTACAGTAATCATATTCTGAAACTGTGCATAACAGTCATATTTTGGGAGCTACACATTGTA CATTGATGTACCGGTACATGTATACATGTATTGTCCGCACGAATGCTACATGTAGATGCGTTACAAATCT GTTTTGATGAGTGAATACGTCTCTAGCATATTTTAGAATTTACAAATGTTTTGTTGAATGTAACATAAAT TGACAGCATTTCCATTATACAGTATGTTCTGAGGCTAACTTCAGAGGCTTATAAATGTGGACAATTATGC GGATTTGTAATCCAGTAAGCACAAATCTACAGGGTTCTTTGAACTTCATTGCAGCTGTAGTTTAATCAAA GCAGAAAGCACAGATTATATTGGCAATTGATAGCAATTTGTACATCTTGCTCAATAACAGGTTGTATAAT GTGTGTGTTCTGTTGATTCAATATATTTATTAGTTGTTACTGTACATGTAGGCTAAATATTATGGATAGA AAAGTGAGGAATTTACATGAATTTACACATGTACATTTTGCTAGCAAACATGTACAATATTCTAGGGCAG TAGTCTTTCAAATTACATTGTACATGTCATTGGCTATCACTTCCTGATTAAATGAACAGTGTACCGGTAC ATGTACATGTACTGTAGGTCTGTGTTTTGGGTATTATTATCTGGCCATTTTTTTCATCTGCTATCTGTGG TGTCCTACATGTACATTTGGTCTTTCACAGATTACATTGAGTGATAATATACATGTACATGTACACCCCA ATACTGGTACCCCTTTCGCTATGAAATACATTTTAAAAAAGAAATCTTTAAAATAGCAGTACATGTACCT GTACATACATATTTATGTACAGTGAAGAGAGGCAACAGAAGGTTATTCATTTCAACATCCTTTTTTAACT GATTTACTTACAAAACTGGAAATTTATTTTGTTTGTGCATGCAAAACATTTAGTTTGGCATGGTGCCAAA GAACAATAAGTGAAAAAAAAACAAAAAAAACTTAAAAGGTAATCCCCAACTCAATGTCTATTGTGAAGAG TTAGAGAAAACAACTTTCCTGAAGGTGACCTACCACTACTTTTATTGGTATTATGGTTTATTCAACTGTA AGAGCTCTTCTATTGTAATCCAAACCCATGGGCCTTTCTTTTGTACTTGCATCAATGCAAGAAGTGAATC TAATGACAAGCAGGTGCATAGCTCTGCATTTCTATGAGAAACAAAAGTATCAGTACATGTACATGTTTGC ACATGTCCGACTGTGTAACCCAGCTTTTATGACAAATGGATCTAATTTGAGATAAGGATAAGAATTTTTT TTCTTTAATAAGATGCCCAATTTTCATGCCCTTAAACACATTTTTGTTCCAGTAACAGACTAAAATAGAT ATTGAGAAAAATATTGTGCGAGTACATTTAGTACAGAAACTACAGATAAGTACATACATGTACATGTATA GTTCATAAAACCAGCTTCGACTTAGGTCACATTGACACCGTGGGTTAAAGTTCCCTTTAATATACAAACT AGTACATACATATACCCATTGAATTTTGAGCACACATACATGTAATGTACAATGTAAGTGATAGTGAATA TTTATTGTTTTACTTGCATTTAAGGGCCTGGCCTGTCATTTTCATAGCAGATTATAACTACATAAATTTT AAAAATGTAAATGTATATCCTTCTTTTTTGTGGTATTAAAGGGGAAGTCCACCCTGATATTTAGTTTAAA CATTTTTTTAAATTTTCATAACTTTTCTATTTTCAATAGGATATTGCTCAAACTTTCACCAATTTTTTCT CTCATTTGTTTGCATTTATTAAACCCAACTTAAAAGTCATGCAAAGTTTTGGGAAATTTTGAATATTGGA TGGATAGTAATTCTTTAAAATGTTGATATATTTTGATGCCCCTGTGGATGTATTATAAGCACTAGAAAAT TTAGCCCCTAAAACGATTGTGCTTTTCAAGAAATTTTCAAAATATAATAAACATTTTACTGGTGCTCCCG GTAAATTTAAAATATTTCAAATTGTACCTACTGTATGGCCATTCCATGGTAGCTGCGACCATGAAAATCT CAGAATATGCGGTTTTTATATATAATTTCCAAATGGGAATAGCAAATCGGTCTACCGGTATTGTAGTAAA AAAACATTGTTTTAAACCTAGAGTAATATCAGTCTTGAGAGGGCACTATACAACGTAAAGACTTTATTAT TTATATTTCTATCACTTTAGACCCGATTTCAACCGCGACAACGATCATTGAATATTGTGAAATCACATAT GCTTCCAATATGTTCATTTGAACCAATTTCATGACCCCAAACCAAAACTTTGTATTACCTTTAATATCAG GTTGGACTTGCCCTTATAACCTTAATGTCACCTTTGATCTACTTGCCAAGATATGGGGGGGGGGGGCTTT GTTGAGGTTACATTGCATATTCCTGTAAATTATATTGTCTGTTATAGGAACTTTATAATGTTTGTTTTTT CCTTTACTGCATTATCTTTGCATAATGTTATGAGAGAAAAGAAATCCAATTTGGGTTAACTCATCTGGAA CTCAACCCATTTTCACTGTTGTATGGAAGACCAAGAAATTTAATTTAATTATGATGGAGGGAAATTTGTT TCATTAATTTTGTTTTCCCTTGTTAACAGTGTGTTTCATTGTCCAAGCAGTGATGTAAACATATATTGTT CATTTAAACCCATGTGAAATAAATTATCAAGCATTTAATGAGATATAAAACAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds