Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030975139.1 PREDICTED: Strongylocentrotus purpuratus alanine--tRNA ligase, cytoplasmic (LOC589790), mRNA ACTATTTAGAACGTACAGTAAAATTGTTGTACACAAGCTGAATGCGCGTGCATCTTCAAATGAGACAGCT GTCGTCGATTGCTGGAAATTGTACAGACGCTTCATACAGGTGAATTGACAAACTTGAGTGAGAATGGATG CCAGTCTGACCTCGAAGGATATCCGTCAAACTTTCATTGACTTCCATGTGAAGCTGAATGATCTGCCTCA TGACTTCTGGAGGTCATCTTCCGTTATCCCTCTGGATGACCCTACCCTCCTCTTCGCCAATGCGGGTATG AACCAGTTCAAGCCTATCTTCCAAGGAACAGTAGACCCTAACAGTGACCTTGGACGATTGGCCCGTGCTG TGAACAGCCAGAAGTGCATCCGTGCCGGTGGCAAGCACAATGACTTGGACGATGTAGGCAAGGATGTCTA CCATCACACTTTCTTTGAGATGTTGGGCACCTGGTCATTTGGTGATTACTTCAAGAAAGAGTCTTGTGAG ATGTCCTGGAAGCTGCTGACCGAGGTTTACAAGCTCCCTGCAGAGAGGATGTACATCACATACTTTGGAG GAGACCCTGAAGCAGGACTAGAGCCAGACCTGGAATGCAAACAAATCTGGCTTGACTTGGGCATTCCTGA AGAGCGTGTGATGCCGTTTGGCATGAAGGACAACTTCTGGGAGATGGGTGAGGTAGGACCTTGCGGGCCT TGTACTGAGATCCACTTTGATCGTATTGGAGACCGTGATGCTCGCGCCATGGTCAACATGGATGTCCCTG ACGTGCTGGAGATCTGGAACCTTGTATTCACGCAGTTCAACAGAGAATCTGATGGGGAGCTGAAGGTTCT ACCAAAGAAGTGCGTTGACACAGGCATGGGTCTGGAGAGGATTACCTCAGTCATCCAGGGCAAGTCATCC AACTACGATACTGATCTCTTCCAGCCAATCTTTGATGCCATCCAGAAGGCGACTGGAGTGCGTCCATACA CTGGGAATGTTGGAGCAGATGATGTTGATGGTATAGACATGGCTTACAGGGTAGTGGCTGATCATATCCG CACATTGACCATAGCTCTCTCGGATGGAGGCAGGCCAGATAATGTTGGAAGAGGTTATGTTTTAAGGAGA ATCCTGCGTCGTGCTGTCCGCTTTGCCACAGAGAAGCTGAATGCCAAGCAGGGTCTCTTTGCTTCTCTTG TCACAATCGTACAGGATAACCTGGGTGAAGCCTTCCCAGAGATCATGAAAGATCCTCAGATCGTGATGGA CGTCTTAAATGAAGAAGAGGCACAGTTCCTCAAGACTCTCAACAGAGGGCGTCGTGTGCTCGAGAAGACC ATCTCGCGGCTTAGCCCTGATTGCAAAGTTCTGCCAGGTCGAGCAGCATGGCTACTGTACGACACCTACG GGTTCCCTGTAGATCTCACAGGGCTCATGGTGGAAGAGAAAGGGATGTCTGTTGACTGTGCAGCTTATGA AGAGGCCAAGAAGGCGGCGCAGCTTCTATCTCAAGGTAAGGGCTCTGGTGTGGATGATACCATCGGTCTG GATGTCCATGCCATCAATGAATTACAGGAGAAGAGAAAGGTGCCTCCAACCAACGACTCCGCCAAGTACA AGTACGAAAGCAACGATGGCTCATACACTTTTGAGTCGACAGTGGGTACAGTGATAGGCCTGAGGAAGGA CAGGCAGTTTGTAGAGGAGGTCAACCATGGGGAAGATTGTGGAGTACTCCTAGACCAGACCTCTTTCTAC GCAGAGTCTGGAGGACAGATCTTTGACGAGGGCTTCATGGAGAAAGAAGGAGACAAGGATGTAGAGTTCC GTGTAACCAACGTGCAGGTCAAAGGTGGCTACACACTTCACATTGGAAAGGTGTCTGCTGTAGGAGACAC AACCAAAATCAGAGTTGGAGACAAGCTGAATCTCTACATTGATGAGGTGAGAAGAAGACCTGTAATGAGC AACCACACTGGGACTCATGTCTTGAACTTTGCCCTCCGCAAGGTGCTGGGTGAGGCTGATCAGCGAGGCT CACTGGTGGCGCCAGACAGGCTACGATTCGACTTCAGTGCAAAGGGAGCCATGAAGACAGAGCAGATTAA GAATGCAGAAGAGATTGCCAATCAGGTCATCTCTAAGAAAGAAACGGTCTATGCCAGGGTCACACCTCTC GTCGAGGCCAAGGCCATCCAAGGGTTACGTGCTATATTTGATGAGACGTATCCTGATCCAGTCAGAGTGC TCTCCGTTGGTATACCTGTAGAAGATATGACCTCTGACCCCGCTGGGCCTGGAGGTACCGTCACATCGGT GGAGTTCTGTGGTGGAACCCATGTACGCAATGCTGGTGACATAGGAACCTTTGTGATTTCATCCGAGGAA GCCATCGCCAAGGGAATCCGAAGGATAGTAGCCATCACTGGGCCAGATGCTGATAAGGCCAACGTGCGTG CGGAGGGTCTAGAGAAGCAGGTAGAGGCCCTGGCCACCAAGATCCAAGCCAAGGGAGCTAACATGATGCA GAAGATACTCTCAAAGGCTGTCTATGAACTTGGAAATGATCTGAATGTAGCTATTGTTCCTCAGTGGAGG AAAGACACAATGCGCAACAGGCTCAAAGAGCTGAAGAAGTGCCTTGATGACATGGATAAAGCAAAGAAGG CTGAAGTCATGCAGAAAACCAAGGAGGCGGCTAACGAGATAATTGCCAGCAACCCTGATGTACCCTTCTT GGTGGCCCGTCTAGAGGCTGGCTCCAACTCTAAAGCCTTGGATGCTGCTCTCAAGGAGTTCAAGAGCAAG TCACCCAAGACCTCTGCCATGCTCTTCAGTGTGGACCAGGAAGCCAACAAGATTGTCTGCCTGGCACAAG TACCTAAGGATGCTGTCGGCAAGGGACTAAAGGCCAACGAATGGGTGCAGGAAGTAGCAGGCATCATGGG AGGAAAGGGCGGAGGTCGTGACGTGTCCGCACAGGCCACAGGAGACCAAATAGGAGTTGTGGACCTGGCC GTGGAGATGGCACAACAGTTTGCTCAACTTAAACTAAGCAGTTAAGGCTAACAGTGATTTGTATTTTTCT TTCTTCATGTAAATCTATTATAGTTATAATGTTATTTTAATGGCTAAGTTTAGTTATTGCAAGTGCTGGG AAATACAATGAGAATCTACTCTTCTATTTGCTGAAGGCAATTTCTATAAAAAAACAAGGATATTAAATAT AGATTTTACCTTCGAATAAATGACTACATGATATGAGTGAATGTAAAAAACCTTTATTTAAATCCCAAAT ACAGATGATACTTGTGAAGTTGCAACATCTGTTTAAATTTCAGGTATCTGCAATAACCTGAAATTTTTGA GATTGATGTCTGGCACTTGCAATTAGTTTACATTGGCTAAAGATTGCATGCATATTAAGTACCGGTATAT GAGACTGATATGTGGAATGCATGAGAAACCATAGAGTGCCCTCATGTATCCTAGTCAGAGTTCATATAGA AGGAATGTCCTGTGAGAATCTGAATAGCCTACTTTTTTAGGAGGTTACATCTATGTAGAGTGGACCACAA AAAAGGGCTTTCGTAATACCTTTTTTGAAGTGATACATTATTGTTTTACAAAAATAAGTGCCCCACACAT GTGCAGCAATTGGTGTAGCGCTTTGTAACTGCAAGGAAAAGGCGCTATGTCAAATACTGTTTGGATTAGA TTGGAAACGATATGGGACCAAGGTTTCCAACAATTTCACCCATAAAGCCTTGTTAAAGGTAATACAAACT TTTGGTAATATTTCAACAGGATTGGATTATGAAATTTAAAATTTGCATTTTTATTGTGAAACCTAGTGTT GGAATAAGCAACTTTGAAAAAATTAGTCTGTAAAACGCTAAGGATTTTGAGGAATTAAAATATCAAATTT ATCGGTGCTCCAGACAAATTTCAAATAGCGCCTACGGCCAAACAACGGCAGCTGCAACCATGAAAGTCTC GGAATAAGCAGTTCTGATATATAGTTTCCAACCGGTAATAGAAAATTGATTGATTTTAGTCAAGAAACAT TGTTTTGAAGCTTCAAAGTAACATCAATCTTGAGAGGGAGCTATACAACATAAATATTTTATTATTCACA GTTGCATCTCTTGGACTTGATTTCAACCGCGACAACGATCATCAAATGTTGTAGGATTCATTCAATAGGT TCATTTGAACCAAATTCATGACCCCATACCAAAACTTTGTATTACCTTTAAGATACGAAGCTGTAACCAC AATAATTTTGTGGTAGTGGTGACGGAAGTAGAACACGCTTGTTTCAGGTGCTCCATTCTCTTTCATAGTC TGTAGGTCCCCTAGTTGTGTATGTACAAACATATATTCTCTGCTTTTGTTAGTTGTTCCACCCAAAACAA GCATAAAGTGTCAAGCCAAGATTTAAGAGAATTGGGTCTGTGCATTAGTTTATTTGATGGGGTAATGATA TATGTATGATATACCAGTATAGCTTGTGTTTGTTTTATTTTGTTTTCTTTTAACTTAATTATCAAATTTT TCTTTAGTCATGTAATGCAAACTAATCACGGCTAAATTTTGCAAGAAATTGAATATATTGGTATTCAAAA ATTGTTGAATACAGGAAGTAGTACTGATTAAGGATCTGAATAGTTGTGTGATCAAAATCAAAATGCAGGG TTATTTTTGATCTTTCCATGGAGGAGAAATTCCCTCTTGGTTTTAATCAGAAACAGTTGTACAACCGTCT TAAGACATACATCACTCCAGTACGTTGGCTATTTCAGGATCTTTCCAATCAAATGATAACTTTATGTGGA ATGCCTCACAATGTTAATGTTACCTCATGATCTTCCTATTCACACTCGGTCAATTCTTTGACATCTGGTG CATTGAAAAGGCTGCATGTTTCATATGTGCATGAGCAGAGATGGATTTCCACCAGCTATACAGCTATGAA TTGTTGGATAGTTTGATGTAATAAAGAATCCACATATCTGAGCTTGACTACCATTGAAGATGTAGTTGTC TTTTCTTGCCGCACATGCTCAAAGTAATATGAACACCCCTCGTGTGGATACAGGGTGTCGCAAAAGGTAT TCAATGTTGAAATCATAAAGTAGAATTAATTAAATTGTTATGTTTAACTACATGATAAAAATGTTGTGAC AAGGCAAAGTTATTGTTGTGTTTGATGAACCATGAAGAACAATTTTGATCTATTCTTTGAACTTGGCCCA CATGTTGATTACCGGTAATCCTTTTAGCTTCATTCATGTAGGAACGTTTCTTGTAAAAACAATACATGAG TAGTATGAGTATGTATGAGTAATGATTTAGGTCAAATATTTACAGGATTAATAGTGAAAATAGTTGATTT GAGCTGTGATATGCAAGGCTATGTTTCTACAGTAACAGATGGGTTTACCTTATAAAATAGGGTGAACAAA TATTAAGCTAGCCTTATTTTCTTAATTGTCATGCAACTTAAGTATGAATGTATCATCCAGAATTCCAGAC TAACATGGGAACATAAATTAAAGGATGTGGTTTAACTTTAGATGTACATATTCCAATTCATTGTACGTGT ATTAAGTCTATTTCAAAGGTACTGCTAAACATCTTTTAGGCAAATATATCATGTATTAAATAATTTACAT TGAGGTTCAGGATTACATTCAAGGTCTAAGAGTGTTTACATGTTGACTAAATGGGTGGGTTTTTAAGATT AAAATTGGCTGTTCATGTATTCCTCTGTAGTGTTTCACAGAGCAGTTAAGGACATTAATTTTGTGTAATT GGTATAAAGAAACCTAACCCTTAATTCTTTGTATAAGCGGTTAATTTTACTAAATCGCCAAAATATATTT ACAGCGATATTCAATGAAAACAACTTTGGTGATGTTCCAGCATGAAATTGAAACTGGAACTAAAGAGGCT TTCAATAATAATTTGTATGTGAACTAGAGGAACACAATTTTCAAATTAGATGTGATTATGTCAATGATGA GAAATTATTGAATGGTAATTGTAAATTGACATGGAACAGATCTTTATGAAGGTGTATGGTAATGCCATTG ATGTAAGTGATAATCAAATCATCATTCTTGCATTTTCAGCTGAAAAATTGAAATGTAAACATGCTCAAAT GTAATAACAAAACAAAAAAATATTAATTCCCAAGAAAGCATACTGTTTTGTTTTGCTTTTGTGTATTCTG TTGCAATACAACTTTTATTAGGCGTCATTCCATTAACATATATCATGTCTTTAGTGAATTCGACTCATCT GGTATTCAGAATAAACTGACAAATTTATAAGATAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds