Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030976049.1 PREDICTED: Strongylocentrotus purpuratus zinc finger and BTB domain-containing protein 24-like (LOC115917914), transcript variant X4, mRNA TCAGCTGCTCATAGCCATTCTTTGCATGCGGCTACACACCGCTGTATTTCCCCGACCGCTATGGCTAGAA ATTGACAAGGAAGGCGAGCGCCACTACTCGATCATAATAACAGAGAACCATGGATGAAAACACAGATCAA CCTGGAAGCCAGACAGAAGAACCTGTGGCACCAGCAGACCAGGGGGAAGCTGAGGGAACTGATGCGGCTT CCATGAACGTCCTGGAGACCTATCTTCAAAATTTCAATGAGGAGCTTTCATCAGGTCCTGCCACTGCTGC TGGTGCAGTTCAGCAAGCAGCTGCGTCAACTGTTGCAGCTACAGAAGAGGATGACACTGAATCCCCACTG GCTGTACATGTAGAAGAGGTGGCTGATGCAGAAGAGGATGTGCAGCTTGAAGAAGGAGCTGAAGGAGATA ATGTTGCAGTGGTAAAGCAGGAGATAGGTGAAGAGGAGGAGATGGAGGAGGAAGTGGGCGAGGCCAGCCA ACCCGCACCCGACCAAGCCACCATTGACATCACTCACACATTACAGCTACTAGCCAATGCCTCTGCAAAC ATCAGCAATCCTAATGCCTTACAGGAAAACCAAGAGGGAGAGATGGGGACAGAGAACACTTTCATGCAGC AGCTTGATACCTCTAACCTAGTTGATGAGAATGGAGCCAAAGTGGACCCGAGCAGAATAGCAGGTATACA GACAGTGAATGGAGAGCAGGTGGTGATGGTACATAACATGGAGGACGGCACATCAGGAATAGGACAACAA CAGGTGCTAATGGTAGCCATGCAAGACAATGGTCAGTTATCGTCTATGGATCAAGGTGTGGCCCAGATTG CTTTCTCAGGAGCACCAGTCAATATGGTGGGTGATAACATCGTCTACCAAACCACGCAGAACACGCAGTA TGTTCCAGTTTCACATAATGGCACTACACAACTAGCTATGACACAATCTGGAGGTGAGCCTGGTACTGAG GTGTACACCATCCTTCAAACAGTAGATGGTGCAGAGACAACCACTATTACCACGCCCACAACGATGGTCG TCTCATCAGGTGGCGTCCACCATCTTGGTGATGAGCAGACCCACGTGATCGCAACGACGTCGGGCGATCA TCCTTCCTATGCAGAGCTACAACCCGTCTCAGAGGATGCCGCACAGCAGGAAGAGGGTGCCCTGCAGATG GCAGCAGCAGAACACGAAGAGGTGGCCTTGATTGTGCAGAAGCCTGTTAAAAGGAAACGAGGACGACCAC GCAAGGATGAAGCAGCCAAGATGCAGACCCAGATCGTCATTGTCAGGGAGGTTGTAGAAGGAGAGGATGG CCAAGATCCGTCCGTCTATGACTTCTACGCAGGAGAGGACGACACAGCACCGGTTGCTGGAGGTGATGAG AAAAGTGGCATAGAAGTTGGTGGAGCCAAAAAGAAGACCAGGTATGTGGTGCCCAAGTTTGATGATGGCC GTCTACTTGATCAAGTTCTTAATAGAGCCAAGAAAGGGGGTCCTGGAAGGAGACCCAAGGTGCATGAATG CCATCTTTGCGGTCGCATATTCCGCACATCCACCTTGCTTCGCAACCATGAGAACACTCATTCTGGAACC AAGCCCTATAAATGTGAGCTGTGTCCAAAAGCCTTTGGCACATCTGGTGAGCTTGGGCGCCACATGAAGT ACATGCACACCCATGAAAAGCCCCACAAATGTCCATTGTGTGACTACCTGAGTGTCGAGGCGTCCAAGAT CAAACGTCACATGCGTTCCCACACCGGAGAGAAGCCATATAAATGTACTCTGTGTGAGTATGCCAGCACG GACAACTACAAGCTCAAGCGTCATATGAGAGTTCACACTGGCGAACGTCCTTTCAACTGTTCTCAATGTG ACCAATCCTTTTCCCAGAAGAGCAGTCTCAAGGAGCACGAGTGGAAACACGTTGGAAATAGGCCATCTCA CAAGTGCGATCACTGTGACACCACCTTTGGGAGATATGCCGACATGAAGACCCATGTCCGTAAGATGCAC ACAGCTGGTGAACCCATGATTTGTAAAATCTGCGAAAACGCATTCACTGACCGATTTACGTATATGCAGC ATGTGAGGGGGCACAGGGGCGAGAAGATTTACAAGTGCGGGGAGTGTGGGTATTCTGCACCTCAGAAACG TCATCTTGTGATCCACATGAGAGTCCATACAGGGGAGAGGCCTTATGAATGTGAAGAGTGCCACGAGACC TTCAAGCACAAACAAACCCTCATCAACCATCAACGTAGCAAGCACAACCTGATCCAGGAAGCAGATGGTA CCAAGAAACGTAAAGCCACAGATGAGATCACAAGTCCCAGCAAGAGGATAACAAGGCGTCAACGGATGCA GATCCAGGAGGAGGAGGAAACGGAAGAAATGGTAGAACCTCATACCTTGACCACAGCTGACGGCAACACA ATCCAAGTATCCATGGCACAAGGTGGCGAGGGCACTGTTCAACTTGTGCAGACCAGTGATGGCACCATGC CTGTTATCCTGACGGTAGGAGGGGACGGCCAGAACGTGGACGAAGCACTCCAGATGATGAATGGAAGTCT GGCTGCGGTCCAGGGCCACCAGGATGGGGAAGGACAGCTCATGATGGCTGTACCTCAGGGAGACGGAGAT AACCTGCACCTTGAAGGTCAGCAGGCTTCCCAGCAGCTTCAGACCTCGGACGACATCGTGGACGACTCCC AGCCTCCGGAACTGCAGCAGGAAGGCCAAGTTCAAGAGGTCTCTGCTCCACGGGAGAGCTCATCCATCAC GCAGGAGCAAGCTGCCGCTCTACAGCAGCAGATGGTCAGCCAGGGCATCATCTCGGAGGGCTCCGTCATC GCAGCAATGGAAGAGGATGAAGATGGCACCGGAGATGGCACAATATATCTATTCGTTGAAGAACAGTAGC GAGAAATCACCCACCCCTGGTGTAATTATTTTTAAATTATTCTATTATCTCTCAATTTTCAATTAATTTA AGAAAAGATAACATAGACCTGAAATGAGATGCCATAATCGTTTGTTTTGAATGTGTCCTCACATGTTTCT TTTATTGGTGTTAATGTCTTTGTTTTACACAATCCCTATATTTTTCATGTATCTTTGGGAAAGAGATAGA TGGGGACGGTTTGTTGTCACTGGAGTGTATTATGAGACAAAATATATCCGTAACATACATGATTGTGTAT ATTTGTTTAGCCTTGCACTTCATCTTCCAGATGTGAAAGTATTTAAATCCACATCGCTCCTGTATTTTTA GAACATTTCTGTTCACCGTTGTCAGTGCTCCTATGATTTATTATGGTATTTCTTAATTTGTCTATGTGAA CTAGTAGCACTGCATGTATTAGGATCTGTAATGTAGGCCAACTGTAATGCAATGCACACCTGATAGGGGC AAAGTATTGTCCATTTCTAATGGTCTAAAATCAATGATTTTCATACATGCCTTTTTCTATGTCAATCTCA CAAAAAAAAATTCTCCAGACATATTGAATGGGTAATAGTATCAACAGCATATTGCTTTAGACAGAAGAAA TTTGTCAATTTGATAGAATGGCTGAGTTCATTAAGTTCAGTGAGAAGGTATGTGAAGTCATATTTCTCTT ACATGCAGATGATAATTTTTTTGTTAATACATAATGAATGAAACTGGTAGGATCTATTACAGAGTTTCAT CATATATTTTTTGTACCTCACTTATTTTGTAGTTTCTTAGTCTGTTCTCTTTGTAGCATGCACCAATGGA ATACTCTTGTTTATTTCTGGTTTATGTAGAAGTACATTACATTTCTTTCTTGGGAACTTGGGAAGACAAT CAATTTTGTAGAACTCCAATGAAACTTTGATTAAAATTTAATCTTTGTTATGCATTTTATGTTCCAGACT AGCTTTTAAAGCAAAATACTTTTTGTATAGAAATTTAAAAGTTTAAGAGCTGAATCTACCTGAATAGTAT CAATTATCAATCAGTATTTACCATATTATCTGTACATGTACACTGGTAGTAATGCATGAATGCAAGCAAG ATAAATTGGTATGCACTCAAAAACTTCTGGAAAATATTTCAAAACATAATTAAAGGGAGCCATGTACAGT ATGTATTTCTAGACAAATGTTTCGATATTGGTGACAAAATTGGCAGGCAGCTTTAGGTTTTACATTAACT TTATTCTTTACTTAATCTTATTACATGTAGTGGCTCCACTTTATATTGTAAATATTATGGATCTTTGACT TGAATGGCACTTTGTATGAATACTGTGTATAATAACAAAAAGAATTAAATTGTGTATATTTTCTAACTAC TGAGAGCAAGAAATTTGAGGAAGCTCACTGATGCCCATATGTAAGTTTTGTCATTCCTATATGTTGATTT CCAGATCTGCTTTGTGTATTATAACCACAGATAGTTGCAAATTTGGCATATATTTTTAGTGTTTTGGTAG ACGGTGTGTACCATTAACCTCACAGTTTGTATGATGTTTCACAAATACGATGATCATGCTTGTTCAGTCT GCCGAGACTCAGAGGGGCGTCGACCCATATTCTGCTTATAAATGTACATGAAGTTAACGCCCTTCTGTCT CTCGGCAGACAATAATAGGGACTTTTAGACAATGTGACGCCCTTTTAAGGCACCGGCAGTGCCTTAAAAT GATGTCACACGTAGCAGTCCACTATGTCGGCGTTCAAATCTAAAAGTCCCTAAAGTCATTTTGTAAACTG TATCCGTCAGGGCAGTATTTTACTTGAAGGATTACTCTGTATAGCTTCGATTTCTTTTTAACTCGGTAGG TTATTTGTTTTGAAATGAAATGCCACTTGGGAATCTGATTTGGAGTTTACCTGATCAGCTCAAATATTGT GATTAAGACAAAGGTTTGGTAGGTACTAATCACACGTGCGCGATGGATGAATACTGAACGCAGCTGTGAA TGGAAAACTAACGTATAAGCTTTGCTGTGTAAACTTCTTTCAGACATAATAAACTTCAAATCCTTCAAAC CTGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds