Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030975941.1 PREDICTED: Strongylocentrotus purpuratus cleft lip and palate transmembrane protein 1-like protein (LOC578454), transcript variant X3, mRNA TTTCGAGAACGTAGTGAGAACAAGTTTGGTGTGATAGGTGCTTGACTTGAACGTCTTGATCTGCAAAGCC TAAAGTGTTGAAGTTGAACGGGAATGAGGAATGGCGAGAACGCTCTGGGTTTTTATAACTCCGAGTCAGG ACGGCATTGTACACGCTCTAGGAGCGCGTTCGAACGCACTCAGAACGAGATGAGGAAGAGTTAAACTGCC TCTGAACAGGGTGGTCGGGTTAAAAACTAGTTAGAACAAGTGGCAAACTAGTTAGAATGGGTTTGGACGT ATGGGAACGAGGTAGAACTAGTTAATAATGGGTTTAAACTGACTACAGACTGGCAGACTACAGACGAACT ATGATCATATTATAGACATTTTTTACACATTCTGCCCTGACCACAACCCGTTTTACGATTTTCTAGGATG GTTCCAGAACGTAGTAAGAACTTGTTTGGTGTGATGGGGGCTTTAGTTTCTGACTAAGCTAATCAATCAT CAATGAATGAATAACGGCAACAGCAACAAAAGTTGTGATATTGATCATTCCAAATTCAATTACCGGTACT CTTCTAGGATATTCCTAACTTTTAGATCTACCATGCATCACTGATACTGTGATAGGAGTATTAGTAGATT TATACTGTCTTTGTGCACAATTTTTTTTAGACACTCTCTATTGATTCTCAAAATTCTCACTCTACAAAAC TTACCAGCAAGAAAATTCAACAATTCAGCAATTCATCTCGCACAGGCCCATGGTGACTCAAACAATTCAC CTTTCATCACCATGGCAACAATTGGTTCATTTGTCACCAATGTACTCATCGTTCTCTTTCTGGGATACCT GTGCAATACGGTTTACACCATGTATAACCTCTTCAACCCACCTCAGTGCGATGTCAACGAGGGTGTCAAC AAATGTCTTATACGACATGAACAAGGGAACAAAGGAAATATGCCTTATCAGCTAAGATTGTTTTCATCGC AGAGCAAGTCAAGATTTCCTCAAGTACACCAACTCACAGAAATTTTACATGTTCCAAAATTCAACATATC AGGGGAGCAATCATGGACAGTGAATGTCTCTCTCCCAGCAAGGACGTGCAAGAATGGCACACTGTACATA CATGTGTACCTCCAAGCTTCAAGCACAGCTAGGTTAGATCAGAGCATGGCCTCGTATCAGACCTCATCCC TTACCAAATACTCTCCTCCTAAGGTGGAAGCATTCAATCTACTGGGAGACAACAAACCTCAGGATGATTC TGAGCAAGTTGCCATCATACCCATATCACACTGGAAACCTAAACTACACCTCAGGGTTCTGGAGGAGCCG TTTGTCTTCCATAGGATGGAGGTTCCAGCGGATATCTACAAACACATCAGATTGACACCTAAAGGGGATT ACCTGCCTATCCTGTACTTACATGAGATGGCTCAAAAGCTGAGAGATCTTCAGCCTATTAATACCACCAG TAAGGAGATGCCACTGACCATAGAGTACAGTCCATTGTCAATCGGTCAACTAAGATTGTTCAGCAGTCTT GAAGAAGGCATGAGTACCATGTATCAGTTAGGTTTCAAGGAGAAGGATACAGAGGAGGTTATGTCAATAT TCACTGACATAAATATAGTACTACTCAGTGCAACAATATTTGTGTCCTTCTTTCATCTCCTCTTTGATTT CTTAGCCTTCAAAAATGACATTGCATACTGGAAAGCAAGAAATAGTATGGTTGGCCTTTCTATTAGAACA GTCACGTGGCGGTGTGTGAGTCAGATCATCGTCTTTTTCTATCTACTGGACCAGAATACCAGTCTCTTAA TAACAGTGCCTTGTGGGATAGGAGCTCTTATTGAGGTGTGGAAAGTGAAGAAAGCATTCAAGGTCAGCAT ATCCTTTGAAGGCTGGAGACCAACCTTAACGTTTGGTTCAGCTACAGATTCAGAGAAAGCAACAGCCGAG TTTGATACCACAGCTATGAAGTACCTCTCGTATCTGCTCTATCCTCTGTGTGCATTAGGAGCTATCTACT CTCTTGTATACGTCCCTCATAAAAGCTGGTGGTCATGGCTTATTAACAGCCTGGTGAATGGAGTCTATGC ATTTGGTTTCCTGTTTATGTTGCCTCAGCTCTTTGTCAATTATAAGTTGAAGTCAGTAGCACATCTACCC TGGAGAGCTTTCATGTATAAGGCCTTCAACACATTTATTGATGACGTGTTTGCATTCATCATCACCATGC CGACAGCCCATAGAGTTGCATGTTTCCGTGACGATATTGTATTTGTTATTTACCTCTACCAAAGATGGTT GTACCCTGTTGACAAGACTCGAGCCAATGAGTATGGAGTTTCATATGAAGAGGAGAAGGATAAGAAGGAA CATAAAGAATGATGGGAGAAACACAGCTTACCGGTACATCATTAGGTTTGCAAACATTTAAGTATCCAAA CCGTGCCAAGTATAAGTAGCAGAGTCTCTCCATCAAAGTCGTCATCAGTCTAAATTTATGCACATTCCAT AGAAATATATGTGACAATGACAATTATTGATAATGACAAGGACAACAATTTTTATTTCTTAATTGGGTCA GAGAAAAATACAGTTGACAGCAAACAAACTTATTTTATAATAATAAACATAGACATGAAAGTGTCAAAAA TTATATTTTTCGAGAAACTAGTGAAAGCAAGAGTTACAACTGACAAAAAGAATTATCTCTACTATTTACA TGATTTTACAATGGAGCATTAAACCAATTTTGGTTTTATGCATTGACAAAATAAAGAGAAAATAATTATC AAAGCTTAGACATGATGATGTTACAGAAGTTTGAAAGGTTCTTGTTGCCATGTCAGTCAGGCATAAGACA GCTATGCAAAAAAAACTACTTTTTATATACACAACATTGACATACTGGACAGGGTTTACTTTGAGGGCAT TTGTCAGTAAATCTATTCAGACTTATTCTGTTAGGATGGCGATGTATGTCTTAGAGCAATAAAACTGGCT TATTTCCTTGCCTTATACTGTAAAACCAAAAAGTTCTGTGGGCATTTATTTGTTTGCCAATTTCACAAGT AGTTCAGATTCACAAAGTTTCATGCCGCTTTAGTTTTTAGATTTATATCATGTTCATGTGCCTTTCTTCA TATGTCCATTTTGTAAAGTGTAGGACACCTCTTGTATCAAAATCATATTGAATTATTTATCTTGTGCATG CATAATAGAGCATATCTATAAAATAGTTCTCACCCTACCAATATTGTTATTATTGAGTATTGTTGTTATT GAAGGTGTGGATTTAAACTTTGACACAAAAATCTCAATTATTAAAGTTTTTTTTTCTCAGATATTCACAG TGTATATGACAAAGTATGATTTATATATAGTTACATATACATGGAATGTATTGCTCAGTTTCAGTCAAAT GTGATATAGTTTCCACTTGTGTGTGATCATCACTTGCCTATACTATAGCAGCCACTGCTTTCTAACTCCA ATAGAACTTGTAAATTGAATTGGACATCTAGGCTGAATTTGTAAGCAAACAATGACCACATTATTATCTC CAAACAACAGCAAAACTTGTGAAAAGGACCATATTAATGTGGATGTATTTCCATTTCTGAATTGACTTTA TATGAAGGGGACTGTATAGTGAAAGTGTGGTTTATAAGTTCTCTGAGCCGATATTTGTGGAATGTGATTT TAATACAGAGGAAGAATTAATTGGAAGTTTTTAGTTTACTAATGTCACAAACTTGGTGCCTTTAGTTGTT TCCTTAATGTAGCTTTTATGTAGGTAGCGGTAGTCCTAATTTTTCCTTGCCTTGTGTGAACACTGGTATT GTTTAAAACAATTAATGTTTGAAATGGGAATAGATTATTTTGCTTTTTTATGCGTTTAGAGAGGAAAGAA TGGCAATTCTTTATTGTCCATTAGTTGCCCATTTTTCCTGTCATTTCAAGTGCCAATTTTACCAACATTC CTTGAGTAAACACTCATCATTAGAATGATTCCGTACCAAGTGCCTTGTATTTTATTGATCACTACATGAT ATTTGTTTCATCTTTACATTATACTGTAATAAATAGAAAGTGTGAATGCTGTAGAAGATAAGCTGTACAC GAGAACGGAAGGAGACTTTCCTTCTGCTATCTGTCTACAAATACACCCTATAGTATGCTTACAAACTTCA GCACTTCAGTGTTGTTTACTGGTTGACATTTTAAGAAGATTCATGTTGCCTTATTTAAAAAAAAAAAAAC ACACATGAATTTCAAATTTTCATTTCTCATGGTGTTGTGAATTATTGTGCATTATTTGGCTGTAAGATTC CATATCGTCGAGGCAATACATTTCATTCCATCCTATCTGTAAGTACATGGATGCTCCATTAATATTTCAT ATTTATGGTGTTTGCTATCTTGAGTATTACTCCTTCTTCATGATGAAATGTAATTTTGAATGAAATTCTA TGAAAGAAAGAAAATATATTAAAAGATCTGCATGACATGGTTCACATTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds