Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030975724.1 PREDICTED: Strongylocentrotus purpuratus receptor-interacting serine/threonine-protein kinase 1 (LOC105436416), transcript variant X1, mRNA CTGCAAAACTCCAATCGCCACTACACTAGCCCTGCATGCTTGCACGGAGGCTTCAGCAAATTTCGAATAA ACAGAGCTAAATCCGAGTCAAAGTCAACGCCCATTGTGCTAGAAAAAGTGTTATTTCGAAGCACGATACT GGCACGAAGCCAAACTTAAAACAGAAATGGCGTTAGAAGCAGGCTGTGATGAAGTTGATGCAAGGTTGTC TGTTCATCAGCTTGATGAAATCATGATGGCGGACCTCACTGTTAAAGACTCCACTGGGCGAAAATGTACC TTCCATGAGAAGGAAGCAAGGGAGCATGAAGGCTGTCATTTGGGTGGAGGCTCTTTTGGGGAGGTCTACA AGGCTGTACATAAAGTACATGGTGATGTAGCTGTGAAGCTTGCTAAACCTGGTAAAGAAGATCAAGTGGT GCTGATGTACCAAAAAGAGGCTGGAAAGCATGTGCTTTCGCTCACATCTAACCACATCGTCTCCATCAAA GGGTTTGTGCAGTGTGAAAAAGCTGCATGCGACTGTGGTTGCCTTATTGGTATTGTCATGGAATACATGA AGCATGGATCTCTCTGGGACTTCCGCATTAGTAAATGGCAAGATCGCCCTGATCTCTGGCCTCTGACCAA TAGGATGGTCCATCAAATTTCGTCTGGAATGCATTTTCTCCACTCCAAGGATATCATCCACCGTGATCTC AAGCTGGAGAATGTTCTAGTAGATGGTAATCTTAATGTCAAGGTTGCAGATCTTGGCCTTGCAACCAATC TCCAAACTTCATTTGGTGATGAGCGTTGTGGCACGAACAGTCACAAGCCTCCAGAAGCTTTTAGGACAGA CTTACCCAACTCAACTAAGGTTGTTACTCCAGAGTATGATGTCTACAGCTTTGCGATGACTCTCTATGAA CTTCTGACAGGTATTCACCCATACTCTGACAGAGGATTTTTCATGATGATGCTATTGAAAGTAGATTCAA AACAATCTCCCTGTCTGCAACCTGTTCCAGCAAACACTCCTGAAGATCTGATAAGAGTTATGGAAGAGTC ATGGAGCTATGAACCAAATGATCGTCCAAATTTCAGAGAAATTACAGATTTGGTAGCGAATCTTGATACT GATCCAACTCATGAATCACTTGGATATTATTTAGGAGAGCAAAGGTCTTCCAAGAAAGAAGGAAGTGCAG ACAAAGAATCTAAGAGAAGAGGAATGGAAAACGTCACTGAACAGGATCAAGCCCCATCCAGACATCACAG TAACACTAATGCAGCAGTACATGATACTCAAACTGCGATAGACAATGAATCTGTGAGAATGGAAGGCTTA ACCCTGAATGATCCAACCCTTGTTGACCAGAGAAATGGCAATAGAGCAAAACCTATCACTGAAACAGTGA CACTACATCAGATGGAAGGTCAAGAAAGTCATCCCCCTCACCTTGGTCAAGATAATGTTGTTGCTCAGCC TGAGATACAGCATAGTCAACCATCATCTCAAGAGTCTTCTAAGCCTTCAAGCTATGGACAATTGAAAAGT CAGACATCTGGGTCACAATATGGATGCCATGATAATAACTTCCAGCCAACAGTGGAAGCAGAACAGTTGA TGGAGTTCACAGGTTTTGTTAGTGCTTCTACCGAAAATTCACCTGGCCCAAGTGTAAGCCAACCTTTACA GTCCTACAGGGAAGACAACAAACCAGTTCCAGTTGAAAGCTCACATGGGAACACTGAATATGCTGTGGGA CACATGGCAGGAGGACCTATCCATCAAGAGAGTCTTGTGGTGGCCGCATCTCGGCCTATCTCTACTGAGA GTCCTGGAGTGGTCCCAGCCCAGCCTAGCTCTACAGAGAGTCCTGTTGAGGCCCCATCTCAGCCTAGATC TATTGAGAGAGACCCAACTGTCATCTTTGATTCATCGCAACCTAGTGATGAAGATTTTGAAATTAAGGTG AAGGTGAGACTCAACATACAACCTCGGGCTTCGATGGCATCGAAACTGGACCAAATCTTCATCTGTCTGG AAAGGTGCAAGCATCGTGACTATTGGGACAGCAACAGCTCCCTTTCTACAATGTTCTCATTTAGTGATAT CACACTGAAGTCACTCCAGCTCCCTGCTACAGTTGACGACGATGACTTTACTCTCTACTTTCGTGTTTGC AACAAGAGAGATCTTGATAAGCTTCATGAATTATCAGAGAAGGGTCGTCTGCGGCAAAGCTTGTATGGTT TCTTTGTTGATGTTCATCTGAAGGAAGTATGCCTTCCTGGCGAACCAGATCTTAAAGTAGAGTCATGGGA GGAGCAGTTCAACAAAGGCACGGCACACTTTCAAAAGAAGGAAAAGGCTAATGAGAGCAAGTCAGACAGT GAAAGCAGTGAATCCAGACAAAAGCCACCAAACGAGATCAGATCAGGAGCTTCTTTCACTCAGACCAACT GCAGTGGAGCTACACAGATTAATACAGGAAAAGTTAGAATTACTATGAATTCGGCACCAAAGAATATGGT AATTGGAGACCAGTACAACTACTACAATCACTATCGTGGTTCTAGAGGGGCAGGAGAAGGAGCAGGGGGT CATTCTTCCGGTCGCCAGCCTCAAAAGAAGAAGCAAGGGGAGACGAAGCTTTGCGAATCCAGAGAGAAAG TTAGTCAACAAACACTACTAGATATTGAGCAACTCATCCCAGGAAATGATGTGAAATCTCTTGGACGTCA TCTAGGATTGAATCCTGTGCAAGTTGAGAATATAATGTATGAGAACAGATATGAGAGAAGCAGTGAGACT GCTTACAAAGTTTTACTGGAGTGGTTACAGCAGAAAGGTCGACAAGCCACCAAGGCGGTTCTAGCTAATG CGTTATGGAAAGCCAACTGCTATGAGGCTGCGAAAAGTGTTCATTGATAGAAAGTTGTTTGTTGTGCAAG TTATGCTTGAATAATCAAGGAACATGCAGCGAGGTCTTAAAGTTCATGTCAAATGTAGCTATTGTTGGCA TCATGTTTAACATAGCAGAAGCATACGAACTAAAGAATAGATAAGCCACAATCATGTATGATGTGTGTTA TGTATTTTACAATGTACTAGCCATTAAAATTATTTGTGATCCTCCTATAAGGGGATTCCACCCATGTACA GTACTAAAGGAAAGGTTGATAATTGTATTCAAGTTTGATATAAACCACCAGAAAGAAGCCATTACATGAA AATGCCTTAATTATAAGATGTGACCTTTCTTATTATTTTGTAAAGATTGTATCATCTCTTCTTACCGTAA TACATTATCAATGTAAATACAGACTGTGATGTTCCTAAATTCATATTGAATTATTAAATAATAAATACTT TCTATTTGGAAGAACTCTGTTCTATGTTGATATCGTCAGTTAAGAGAACCAAAAGCTGGATACTAAATCA TGAAGCATGAGTTTCATTTTATTGAAAATTTGTATGTATATCACTCTCTGCACTGATGGTATGCCTACAA GTTTTGTAGTTGAAAGAGGACTTTTGTAATATACCTTTGATGATGATTAACGAATTTGCATGTAATACTG GATAAAACCATATTAAAGTTTATTAAAACATTAATTGCAGAAGTGTACTTATATAACTAGATACAGCCTT ATTAATGTATAGGTAATGTACAGAAGCTTAATTACTCCTGAAATATGAACAGTATGGCACAGTGAGAGAT TTGCCAAACCCTTACGTAAAAAGGGTACCAGTTCTAACTCCAAATTAATCAGAGTCACAAGAGATAGACT AAGCCTTGCAAAATGAGTTGATTAATTGGTCTGAAATATTGTAATTTTTAGGGGCAGACTATTTTGGTCA GTCAGAGTTTAAACACATAAGTCAGAAAACTTATATGATAGCAAAAGAGCATGGCTATAGTGACCTTGAA ATTTGGAGAGGCAGCCTTTGTGGTTGTAGAGATGTTTGAAATCACCATGCCGGCCTTCCACCCTACACCT ACCCAAAGTATGAAGTGAACATAGATGTACACCAGTTTACCAGTGTGAATTTTCCCAAATCTGTGATTAT AGGCCTACCTATATGATTTACTGAAAATTTATGCCCCTTCTAATCCATAGACAGAACTACAAAGATCTAC AAATTATTTTGAGGATGAGCTCCCAGCATATTGTACATTATCTTTGACATGCATGAATTTGATGGTTTAG GAAGATTATGACATTGATTCAGTTACATTAGGATGACCTGACAAAGAAGTAAATCTTGTAGATTTAATCA ATTTTGTACTTACTTTCCGAGATTAGACTAGGGGGATTGAAATTATGTGATACCTCTTTTAGATTTAAAC ATTTTACTATACATGTGTGTATATAGCAATAAGAAATATACATTGGTGATAATGCATCTGACTTGGTCTT TATGTTATCATAAACTTATGATATTTGCATCAACCTTGATTATAATATATATTTTATCATTTGAGCAAAG CTCATTAGTGTGGCTTTTAATTGTTGTTATTTGCAATTGTTTTATTGACGTACGTCTTATAAGATAAAAT ATCACTCTTGTATTTTTATTATGACATAGTCAAGGTTGCGCGATCAATAGCTCAGTCAGTAGAGCAGTCT CGTAATCTGGTGACCCGGGTCCGAAACCAAGGCGATGCACTAGTGCCCTTTGGTAAGGCATTAATCCTCA TTACCAGGTCCCTCGGAGAGGACCTAAAGTCATCGGTCGTCTGGTTGCTTACTTACAAGCATTTATGTTT TCTTAGCAGTCAGGTACAATAACCATCACATCCATATTATCATGGCTGATGAAAAGTTCTAAAATTTGTG TTGCATCAGTCAAGCCTTTAAATATGCATACGACTGCTAGTTATAAAGCTATGATACATGGTAGTAAACA AAATGCAGTTATTACTGATTCTCATAGGTATTCAGAACATATGAATACATTTACAAAGCAGAATTCATTG AGTAATCCTGTAATGTGTCAAATCCATCAGGCAACCAAGTTTTCTAGATTGTTTTATGTCATTTGGTTTT CCATTTCGATAGTAACTGTAAATTGTTTCGTGGATGAAAATATGATATTGCACATCTCACGGCAGTTATT AATATGTTAAGAATTAGTCGGTCTAAGATTTGATATATTACTTGTTAAGCTTATGAGCTCTAAAACCTGG TTCACACACGATGCAGTTAACGGCATCGAAACACTCATCATACCAATCATATGCATATAAAACGCTTCTA TTTTGCTGCAGCATGTCTTTTTTTTTTCTTTCTTTTTTTGGTGTGCAGTTAAATGCATCATGTCTGAATG AGGCTACCAATCAGGATACATATACAGACTTAATGCAAAGCTGATACTGAATGTAATTCAGGTAACCATG CAACTGAAAATCATCAGATTAATTTGTACATATATAATCAATAATTTATCTTTTGATCTGATATAAATTG TATGTCTAAGTCATCAGAATCTTCAACAAAAAAATGTATGTCATTGCATTATGAATGCATTGAAATGATA TCATCACATTGTAAAAAACGTAATATTTTGATGAATAATTAGCAAAGCCGTATATTTGCAAAATGTACTT ATATATTTTGATTTTATGACATTATGTAATAAAGATATAAGCAAACAAATTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds