Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT120688.1 TSA: Strongylocentrotus purpuratus WHL22.642379.2 mRNA sequence CGACCTTTCACTGTGAAGCAAGATGGCGACCTCCATGTTCATTTTTGTGGTGTGAGGCACGTGATTATAC TATCCAGTTTTTCCGTGCAGACGATGATGATGATGAGTTAGGATTCTTACCAGTGCTTTTGAAAATGTAC TGTAGGTATACAAATAAGAATATCTTTACAGAAAAGGGTGTTATTCTACCATTAGTTTGATCTCTTAGTG GCGAGTTTGTTCACCAGTCCCACTTGCGACGTCTGGTGTTGTATTCTAAAGTTGACATTCAAAATCGTAA AGGAATTCAAGCACATCGTTTCTGCCTGGTAAGAAATCTTGTTCATCAGGACCACATCATGCCGAAGAGA AAAAGCAAGAACTCAAACCATCCTCAGAAGATCAAAAAATTTGCACATGAGCAGCAGTTCGAGGGTGTGG AGTACTACTTTGAAAATGGATTAAGAAAGATCAAGCCGTATGTTTACAAGTTTGAATGTTATGCTAAAGG ACGATGGTTTGGCAGCAAACTTCTGGATGTCTTCAAAAAAGAGTTTAGGTTGGAGTCAGCTGAATATTAT GAAACAGCGATCCATGAAGGACTGATCAGAGTGAACAAAGGCAAGGCATCCCCGGATCTGATCTTAAAGA ACAATGATTTCATGCAATCTAAGGTTCATAGACATGAACCACCGGTATCGGGAGAACCAATCCAGATCAT AGCAGATACACAAGATTATCTTGTCATCAATAAACCATCTTCGATACCGGTTCATCCGTGTGGGAAGTAT AGACATAATACCATAGTATTCATCCTGGGCAAAGATTATGGATTCAAAGGCCTTCATACAATTCACCGTT TGGATAGACTCACTTCTGGACTCCTTCTTTTTGCAAGAACGCTTCAGGTATCTCATCGCCTAGATGCCTA CGTCAGAGAAAGAAAGCTAGAGAAGACTTATGTGTGTAAAGCCCATGGAGAGTTTCCAAGTACACCTGTA GTCTGTGAGGAACCAATCTTTATAGTATCTCACAAGATTGGTGTTTGTAGAGTAAAGGAGGATGGGAAGC CTTGTAAGACAAGATTTGAAAGACTCAGCTACGATGGAGAAACCAGTATCATCAAATGTCATCCCCACAC TGGTCGTATGCATCAGATCCGTGTGCATCTTCAGTACCTAGGCTTTCCCATCATCAATGATCCTCTCTAT AATAACACTGTCTGGGGTCAGCATAGAGGCAGGGGAGGAAACAACCAACTTACTGATGAACAGCTTCTGA AGGACTTAATAGACCAGCATGACATAGATATAGATTCTGCGTTGGAGAAGGCACGACTCCAGGCACTCAT CAACAAACCAAAGGTTACCAGCCACATAGACACAGCTATACCTGAGGATGCACCCCTCACTCCAGGATCA CAGGAACCATCAAAGGATGCGGTCATCAATTCAAAGGATGTTAGGACATCAGGCACATTCATTCCAAGCA CAAATGAGTCTGACCAAGTAAATCTGTCAGTAGCAAGCATAACACACTGTGCAACAACTACAGAGGAACT TGGAGAAGATACTGCAGTGGAAATCACAAGCAATAGCCATGTAGAATGTAGTCCACTAGGTGATCCTCCA GCAACCGTCAGCAGCTCTATGGGTGTCACTGATGAAGGAACCAAGGCATGTCCATCTGATAAGGATGATA AGGGCATCGTTGGAAATGGTCGCACATCTATCAATAGCTCAAATACGGGTGACAGCAACATCTTGGGCAA TGCAGGAATGGTAGAGGCTTCACATGACAAGACCAGGGCGAGTACTGAGGAAGTATGCAGGAGCATGTCT TCTACAACCAGTGATGCTATAAAGGATAAGGATGATGATGCTGTGAGGGAAGTCCAAGATGTTGAGGGTA CAGAGACGAGGATGCTTTCGAATGTTAGGAATATCAAGGATGACTGTAACGAGGAGAGTTTGATTGATGA GAGGACGGACAAACTTGCTGTTTCTCTCTGTCAGGAATGTCGTGATCCGATGCCAGACCCTGAACCTGAT GAGATGTTGATCTACTTACATGCTCTCACATACAAAGGTCCAGACTTTGAGTTCAGTGCTCCTATGCCAG CTTGGGCTCAAGAACACTTTGAACGTACAGGCACTAAATACTCCTAAAGGGAAACACTATCATCACGTTT GGGAAACATCTTTTATGAGCAGGAATGCCATTAAAAAAACAAACTATTACATCATTTTCTCCAGGTGCAA ATCTTAATGGTGCATTTGACGTATCTGTGATCACAGATGTCTTTGACATATGAGAATGATTTTATGAGAA CTGCATTTAGTCAACACTAACAGGTGTCCAGGACTCAATTGATATGAATCCACCATTCCACACATATAAA GAAATAATTGAAAGTTCTGTTACTAGCACCGATCTGAAACATGCTCTTGATAACCTGTATGTTGAGGAAG CACTCTAGCAGCTGCCTAACACAATGGGCATGAAGCAAATGTGTAAAGGGGGGGGGGGGGGTCCTTTCAA ATTGTGTTTTTCTTACTCCAAGATGTAATGCATGTGTGTACGATATGTGAATTCTTGCAATATAGTTCGT ACAATTGTATTACTGTGTAATTTAATCCTCATTTGGTATACCGTCAAGTAGTGTAGTGGCACAAGAACAA GAAGATGCTTCTGTAACGTGATTGTTAGCTACCGTTTTATTGAGTGTAATCATAATCATAATCATAATAC AATGCTTCTCCCTGTATGAATTGACATGATTTTCCACAATATTCCTATCTGAATGCATATTTAAATACCA CCAAGCTGCGTTTGTACTTAGTTTTGTCCAACATGTTCATTTAAATATGCATGACATGTATTAATTCCTC ATAAATATTTCCTCCCTTTTTCCACATGTCTATTTCTGTTTGTTCTTTTTGCAAAAATATGAAATAGAAA AGATCAAATAAAGACTCTAAAACACCCCACAACATTTTCATAAATTGGTCATCATTTTAATTTTGAATTA TTGTCCATAACTTTGAGGTTCAAAGATTTATCAAGTACAATGGTTTGGCAGTATATCAGTCTTATACTTA TAATTTATAACATTGCTATAGTTTTTGTAACCTTAAACTTTTTACACCAGAAGCACTGCCAAAAAATGAA ATAAAAACTGTTTTTAATTATTTCAACTTTTTGACAGATCTTTAAAATAAAAAAGCAAATCTTTCCTGAG TTATTAAGAAAGACACACATGTAGTTTCAAATTAACTATTGATGGTATGTCGTAGCTGCAGCTATTTTGA GCTGTAGAGAGATGTCACTTTCTCCATGATCATACAAAAACTCAGAAATAAAAAAAACACTGAGTTGGCC CTTATTTGTGAAGTGGAATTATCAACTTGGTTCATCTTGGTTCACTGTTCTATAATGTCAAGTGCCAACT ATTGTATGATCTACATCCTGTAACAAAATAAAAGTACAAAATGATTATAGTCATAGAATGAAAACAGGAA GGACATTTTTATAAATGACTTGGTTTTCTTTTCTTCAATTGGTAAGAGATTAAACAAAAACATAGTACGG ACATTCACCATTGTGTAGATATACACAGTACATGCTTGCACTAATATTGACAAATTTACATTTGGATGGT TAAACTTGATCAATGATATGCTCTCTATACAACATATTGGACTGTACAAATGTTTTCACTAGTATACGAA CAGGCATTTAGTCAAAAAGATATGCTAACACAACATAATATGCAAATTACACCACACAATGCATATGAAT ATTTCATACACAATTAAGCCAATTGACTACAGAATTTTCTCATTATCCATAAGTTTACTACAGGAACTAC CCAGTTTCAGTACCAGTAGTCGATGAGTCTAATACCAATATACAAGATTTCATAACGGGCAAGAAAAAAG AAGCACCAAGGATAATACAAGATGTTATAAACACAAGGATAATACAAGATGTTATAAACACAAGGATAAT ACAAGATGTTATAAACACAAGGATAATACAAGATGTTGTAAACACAAGGATAATACAAGATGTTGTAAAC ACAAGGATAATACAAGATGTTGTAAACACAATAATGCAGCTCTGAAAGGAAAGAGGGTAGCCAAAATGAA AGCTTACCTTTAAGAAAACAAATTACACAAGCTGGAGTACATAGATATTAAAAACAAAATTAAAATTCAT ATAAAATAGTTGACATATTTCTTGCAAGTACACTTTAATCACTTTTTTTGTGTATGATCCTATGGACTTG GTTATAAAAGGAATGTATTAAAAGAGTGTATTTTGTGCTACTGACATAAATTATTTTGTATCATGTGATT TATTCACCCTTTTAAAGTCCGGTGTTCTGACTGGAGGAGGGGGGGGGGGAGCAGACGGGAGTAACACCAT CACCCAGCTCCCCTTTAAAAAAATATCTTTAAAAGCTTGTCTCTTTTACACCTGCATTGTTAGCTGTTGA ATCGTACTTAAGCAGAGTTTTTTTGTTCTATGATAACCTAGTAACCCTTCAGATCCTGATCATTAACAAA ACAAAATCATCATGAAAATATCTTTACAGGCCATTTCAAATATTGGTAACCAAACTTAATGCATACATCT TTGTGCAATGCTTTGATAGAACTTTTTCATTCACTTTTTTCAAAAAATGTATTTCAATAGAATGCAAATG CACGTATATGTATTACATGATGTTAGGTAGGTCACACGATTATGTGTATCCTACCTAGCAACAGCTCATA TAATTTGTATTCTGACTTCCAGATACAAGCACTCATAATGAGTGAATGAAATAATTTGTATCAAGGCATA TACATATGCATTAAATTGAGCTACAATTTGAAAATGGTCTATTAGATAATTCCCTCATCCTTGAAGGCAA TATAGTCACATCAAGTGCATTATAATCTTATACATTTATTCCCCCCCCCCCCTACACAATGAGGCAGTCA ATATGAATATAATTATAATCATTCAATCCTTTTCTATTATAACCATCACTTATATGAGGCAAATGCTTAA TGAATGTGAGACAGTAGGCCATATGCTCTCAGGCACAGTAAATATGCCATAAATAACAATTCTGTAAAAG TATGTTATTTATAATGAGTCAACAGAACCTTCAACATCAAGTACCATATTCAGATTTCATAGAGCTTAAA AAATACCTCTTAACTATTGTATAATGTCACAACTGCAGGCAGTTTAGCATTTTCAAAGTCAACAGTTTAT TCACAATATTCATTATTTCATTTTTAAAAACCAATGAGAAATTTACAATATGTACAAATCATGTATATAG TACTGTTTATATAGAAAATTGAGAATATAATATGTAATATGAAAAAATATATAAATATGTAGATTATAAA GTGAGCTATTTCTACAAAAAATTCTTACAAGAACATACATGTTTCAAAAATTTTAAAAAATCAATCAACA TTACAAATGATCAAAACATGAAGGCTGATATACATTCATTTCATTTTAACACAATGTAAAATTTACTTAG TATCTAAAATTTAAATATATACATCCTCATATATATCTCAGTGAAATGTAATGATTTAAAAACATAATTC CAGCCATACATGTGAATGTAGACCAAGCACATTCAGTGTTTTAAAATAATTATAATAACAAAATAATTTT CATATATTAGAAGAGTTGTAAAAATATTGTAATGGCAATAATAGTCTTTCAATTGAAATCTCTTTATCCT GATTGTATCATTTAAAAGAAGAGAAAAACATTCCTATCAAAATATTCCTATTGATTATGAAAGCAGAGTT GTATCTGTGATTAATATTGCTCATATACATCCTGTTGACTCAAGGTGTGTACCATATATACATAGTAAAT ATCACATGCTCCTCAAAGCAATGTAATACAATATGTAAACTTATAATTTTTGAGGTGAATACACAGTCAC ATAACATTGAAGAATGATATTTGTGATATAAACTGGAGGGTATTTGCTATGTTATGCTTTGCTCCTTCTC AAGTCATCCCTCTTGATTACATTCAGACTGCTTGCTTCAAAGGTGAGCCGCTATTGACAACCCAACCCAA CGGCAACCATGGATGTGTGCACACTAATGACATCAAAAATTAAAGCAAAATGATCGAACCTCAAGTGATT ATATTACAGCCGACACGATACATAATTACAAACAACCCATTTGCAGTATGCAGTACGAATAGGAAATCCA GGGTGGGGTGGTTTTAAGAAGCAGTACATGAAAGAATATTGCTTGCTGTTATCGAGAGTAGGCTGAATAC GAGTATTGAATGTGGATAGCTCAGATACCTTATAGTAATATCTGTAAGGTACACAAAGAGACATCTGCAA GAGGCAGGCCTTGGCAAAGTCAATCTTAAGTAAAGTTTGCTTCATTTATTTTCTTCATATTACTTTACAT TATTGAGGTGGACGGTTATATTGCTAGATGACTCCAATAAAGTTCGAAGCATCAAGTTTCGTTGATATTG ATGATCGACAAGTGTTCCTACAGCAACTCGCTGTACTGAACAGCCTCTGTAGGTGAAAGCATTGTAGTCA CATTGGTGAGATTAGCCATAGACATCTCTCTCTCGATGGTAATAGTCCTCAGGGGTGGTACAATCAGCAC TCGACACACAATGGCAAGTCCAAGGTAGACAAAACCAAGACATAAAAACAAGAAACGCAGCTGCGCAAGC TCCCACACCGATGTCTTTCTAGGTTTGTCCTTTGATGATTCCATCATTTTGGTAACCTCACTACTCACTG CGACATTCCCGTTTTGACATGAGCTATTATTTGCACTCTTGTTGGGTTCGTCGATACTTATTTCATCAGT CATGACTTGAAGGTATCCATTGAGAGCCACTGGCCGGATCCCGTCACACTGATCATCACCGTAGTTTCCT TCTGTGTTTGAACTGGCATCGGTGACAGCACTGGTCTGCTGAGAACTTGACAGGCCTTTCCTACAGTGTC CATCATTGTGCTCGGTGACCCTTTTAGTAGGGTGTCTATCGCTTGTTCCGTTGGGTGTTGTTTCAAGATC AGTCTGAGAGGCTGCATGATGACTTTTAGCCAAATAGTTGCGCCTCTCATCTTCATGTTCTTCCACACGT TCAATTCTCTTCTGCGCCTGTAAGAAATACACACAAAGAATGGATATAACGATAATGAGATACACCATAC ATGTTCAAGTTCACGTTAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds