Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011682689.2 PREDICTED: Strongylocentrotus purpuratus activin receptor type-1 (LOC590282), transcript variant X4, mRNA TTAGTGAGTTAGCGAGGGTTAGGTCATTCATTCGGTCCCTCATTCAGTCTTAGTAGAGCAGAGCATGGCA CTTGTTTGCAGGTTCTATCCTATGGGAGTCTGCTCTCTTTCATAATTTCTCAGCCTTTATCTGAATTTCT ACCGAGGATTTTTACCCCTTTTGGATTTACAATCATGAGTTTGCCTGGTCATCTTACAGGTGTGTCGACG ATGCGAGCTAGTCAAGATGTCTACGTGGCTGACCTAGCTCACCAAGTCAACAATAGTGTGACTCTACAGT GCAATTGTGATGACTATAGCTGTGAAGGGACCAATCGCTGTGAAGCACTTCGGAAATGTTTCTCATCAAT AACAGAAGTAGATGGCATCATCATGAAGAGAATGGGATGTGTGAATACAGAAGAACAGTTCAACATGTTT TGTAAGATGCATCCTTATCCAGACATCTCTGTGTTGTGCTGTAATCGTTCCTTCTGTAATAATGATCTAC AACCAACGTTCTTACCAACAACTACACCTCGTATCACAGAAGAACTTGGTCAAAAGGTCCCTTACAACGT GACCTACACAGTCCTGGGTGTGGTGGGACCATTGATAGCCTGTCTCATTGCACTGACCATTGCTGCATAC TGCTTCAAACGTCGTCATCAGCAACGTATGGATGAGCTAAGCCATCAGGAAGCTCAGTATAGACAGGCTC ATGATATCAGGGCTGTCCCTGCAGGAGATAGTACATTAAAGGACCTGTTTGATCATTCTAATACATCTGG CAGCGGATCTGGGCTTCCCTACCTGGTGCAGAGGACAGTAGCCAGACAGATCAACCTGCTTCAACAAGTC GGTAAGGGTAGATACGGTGAGGTATGGATGGGTACATGGCAAGGTGACACTGTAGCCGTCAAGATCTTCA GTTCCATTGATGAGAAATCCTGGTTCCGTGAGACAGAGATCTACAACACCGTCATGCTTCGACATGAGAA CATCTTAGCCTTCTTTGCATCAGACATGACCTCACGTCAATCCTGCACTCAACTCTGGCTTATCATGGAG TACCATGAACGGGGCTCCCTCTACGACTACCTCAACCGTCATGTGCTTGATGCAAGGCAGATGTGTCGCC TGGCGCTGACGGCCTGCAGCGGTCTTGTTCATCTTCATACCGAGATCACATGCAACAACAGCAAACCTGC CATCGCTCATAGAGACATCAAAACCAAAAATATTCTTGTCAAGAGGAACTTAACGTGTTGTATCGCCGAC CTGGGATTGGCGGTCCTGCACACGCAGAGGGAGGATAATATTGATATGGGAACGAACACTAGGGTTGGGA CAAAGAGGTACATGGCACCAGAGCTACTGGAGGAAACCATGGATGTCAGGTGCTTTGAATCATTCAAGAG GGTCGATGTATATGCATTTGGCTTGGTCATGTGGGAAATTGCTAGGAGATGCGAAGTAGGAGGTATGGTA GCAGATTACAAGCCTCCGTTCTTTGAGTATGTACCCAGTGATCCAAGCTTTGATGATATGAGGAAAGTTG CTTGTATTGAGAAACTCAGACCAAATATACCAAACAGATGGACCAACAATACAGTGTTAACATCAATGGC CAAGTTAATGAAGGAATGTTGGTGTCCTACCGCTTCAGCTCGACACACCTCACTCAGGGTTAAGAAGACT CTCATGAAGATCTCTGAAACATGTCCCAAGCTAACTGATCCTTATCATTGGGAAAAGATCATCGCCTAAA ACATCATTCATACATTCTACACTGTCATGAAGATCTCTGAAACATGTCCCAAGCTACCTGATCCTTATCA TTGGGAAAAGATCATCGCCTAAAACATCATTCATCATACATTCTAAGAACTGCTTGCAATTCCTTGTTCA GAAGGGTAAAAGAAGTGGTAGGTTTTTACAGAGAGGACAGAGAAGTGACGATGAACATGTTCCTTGAAGA TTTGCGAGTGATAGGAGGCAAGAATTGTGCTAATATTGTTGTCTCCTTGTATCTCCTGTATGTAATGAAG AGTGAACTCTGTTTGGCATTGGATGTGCCGTCATAGAGTTTCAAGCTAGATGAAAAGGTTTCATGATTGA ATCATGAAGAGAACAAGCTTGGTAGCGCTATCATTGCTCTTTGGCTTCATGTTCCCAGTCCGGAGGTGGT AACTCAAAGTTCTGAAACTATCTTTCTTTTTTAGTGAGAGGTCTTTTATTTGTTACAACAAATCTGAATT ATGATGAGTCGTTGGTTAATGACTGCATTAGGTGACTGCATATGTTTGTAGTCATACAAATATCAACACA AATCAATATGAAATCAATGATTCATTGTGATTTCAAGTTGTTATGACAATTCGAAACCCCTTAATTTTGC AAGTTTTTTGATCCGGGACAAATGCTTACCCAAAGCTGTCTTTGCTGAAGCATGTACAGAGAGATATGCA GATGATATGTCAGGCTACAAGGATTATGTTTGGAAGGAATGTGGAAAACACAGTAGAGGGAATTAACTGG GCAGTAATAACAGTATTGAGAAAAAGTAAAGAAAACAGGAAAGTTAAGTGTACAAAATGTATTCAACCTA CAGTGACCCAAGCAGAAATGTTGGAGAGGATGGAAGGCTAAATAGTACACTTGCCTAAGCTCAATCGCAT TTGAGTAATGGATCAAACGGTCACCTTGCATTAATTACAAAGTTTATCATTGATATATTATCAGAGTAGA ACCTCTGACTGACCTGTCTATATATCACAGATGTGGCATGTCTTTTTAAGAATTGATGCCTGTGTTTTAT ATAGAGTCCTGTAAATAGAGTAACCTTTGTATATAGACCAAGAAATTATTGCTGAATGTAAAATTTGAAT TCTTCAGAGGGTATTATGTTGCTTTGTACAGCTAATGTAAATGCATCATGTATTGTTAAATGTTTTGGCT GTTTGGAGGGAGCTATTGCTTCTATCAATTTGGCAGTGAATTGAATTATCAAACAATTATTATGTGAAAT GACAATTACCAAATTCAAAATATAAATGTTAGTATCAGTTGAAAATGTGTAGTTATGAAAGTTGAGTGTC TTTTTCAGACAATGTAATCTGTATTTTTGGTAATTCTCAGAAACAGTACCCATATCTTCGGTTATTTTGA TACTGCATCAATATAAATTTGTGTGGTTTCCAAACATTTCACTGCTTGCTAAACACAATTTTATTCATTT TTTTTCCCGATAAAACAATCATCTCTATTTCTAGTATAGCATCTTTGAGGCATAAATAGAGTTACTGAAA AAGAAAGACTTCATTTGAAAAGAAGTACCTTAATATAAAATGTGAAAATCACATCAGAATAGCAGCAGCA GTGTAAAAAATATTGTTGCTAGAGTGGTATGAATAGAATATTGTTTTAGATGTAATGATGGATTATTGTA TGGATTCCTTGTTATATCAGAGATTATCTGTGTAGTGGAAGTTGATCTTTTATTTGTGCCTTTCTTTTTA TATCATTTCATTTCATCAGATGGCATGCATTTCTGGGTATTATGTACATGCTGACATCAGTTTTTGTATT TATTATTGTTACTTGCCTTTCAATCTTAAAAAGCCAGTCATGGAATGTGTATTTATGTGTTAAGTGAAGA TGGAATCTATCCAAGTAAACGTGAATGATATTTCTTCTTTGGCATTACTTAGGTGGTCAATTTCAGCTTC CTAATCTGTGACTTTTCATTTTCCCCACTCAAGCACAAAACTGCCCCTACTTGCTTGTAAGAGGCTTTCT TTTTGGAATACTTGCTATCAGACAAATAATGCTAGTCAAAGTTTCAAGATGACTTGTGAAATACTGAAGC AAGTTTTTAAGGACTTTATTGAGAATTTTGTTCGATGGAAGTAGTAAATATACAAGGATCATGTACTTGG AAGACATGCTCTGAATTTCTCACTGCGCATGAGCAGAGAATTGGGAGGTATGCATGTGGATGTGACAAAT GGAAAGTCACAATGTCCTCCTGGTCAAAAAGCTAGGACTAATTAACAAATAGCTTGCTTCTCTTTTCATG TATGACTCCCCCAATGAGGACATTATTGGATAATCATTCTGGTTACAGTATTGCTAGGTATTCTATGCTT TAGGAGAACTTTCTCAAATTCATGTGACTCTTGTGTTTCTTTCTGTCTCTATTTTCTCTGACTCTCCATT TCTCTGCTCTGTCTTTCTTTCACTCCGTCGTTCTCTTTGTCTGTCTCTGTCTGTCTCTGTCTGTCTCTCG TTCTGTCTCTCTCAGTGTCTCCTGCTCTCTGTCCTATGTCTGTTGTATGGACATGGAGACTCCCACCTGT CCCATCTTCTCTATCAACATGTCTTGATTGGTCACTAATTGGTTGAGGTCAGTTTGCTTTGAGAACCATT CTCAGGCCGGCCAAGAAGAGTTCCACACTAATTAAAGATATGGCATTCCATCATCACTAGAGATTCCTGT GGTTCGGTTCAAGAAGGGTTACAGAGGCTGATTAATTATTAGAGTAGTTAAAAGGTATGTTTTTGTATGT CTAGATAAGGGTTTATCAAACATGTTACAAGCAAACATCAGATCAATTTCTGAAATGGGAAAGTTTTAAA CGGGATCTAGGCATTAAAAGACAAAATCAAAGCAAAACAAATCATCTAAAGAGAACAGGTACATCGAGTG CAAGTGTTGATGTATCCTGACTTTTAATTTATCAGTTATTGGCATAAGATACATTTTTATACAATATCTG GTTTTTGCAGAATAGTAAGTTCAGAGAATAATGTGCAATTGCTTAGTAGTGTAGTTGGTCATAATTTAGT AAAAATCTTTATATCCAGAATATAGCCCTTGAGGTAGGTTTAACGAACTACTGCCATGCTTGTAGTAGCA ATGCTTGCATTATAACATTGTGTTTGAAAAGATACAACCCTTCAAATTTGCTAAAGATTTGAGAAGCATT AACAAAAACGATCTCTTATCCAGGAATTAGTTGGTCTAAATGCCTCATATGTGGAAATATTTTGTTGATG TGGATTTACAGCAACTGAAGATGCTTCTGCTTCCTTGTCATGGGTTTACATGTTCTGTACAAGTTTATAC AGCCCTCTCTAAAGTCTTAGACAGAGCTAGGATAAGGGTAGAGTTATATATGGATGGAGATGCTCTATTT AAGATTTCAATTGCTGTATATAATGAGTTTGCATGTAAAATGAGTTATGAAAACACTTTTCATACATGCA TGTTTCCTCACTGATGCAGTAAGACATGGAACTCGAAGCTATCTTGTTATATAATCTTGCACTGAGGTAT TTCAGCTATTGCATGGTGATACGAATCAATCTCAGATATGATATGATCTATTTTTGTGACATGAACAAGT TTCACTTTCTTGTATGGAAATATCATGGATATATTAATTTTCACATTGATCAAACTTCTTTGTAAATTGT TCTTTATTATATTACTGTTGTTTAATATATAAGGAGAGGAAATCTTTCTTATTCTTGTTTAAAGTGTTAA GATCGTGATATGAATTGTGTATGTATGATATATATATTTGTAAATAATGATGCTAAAATTTATAATTTTC ACGTAAATGTTTTGTTATTGTTGATATGTATCTATGGTTATGTCATACTTTCATTTGATTTCTTTTTCAC ATTTGTGATATTCAGATAGATAAAATTTTGCAGATCAGTATTAAAGGCATATCTAGGTAAAACATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds