Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_775625.5 PREDICTED: Strongylocentrotus purpuratus death-inducer obliterator 1 (LOC575208), transcript variant X2, mRNA TAGCACTGAAAAATTTAGCACAAAAATTATGCACAAGCAAAGCTTAATTGATCTTTGCACGTACGTACCT ACACAACACATTTGGTCGTCGCATTCCAAGTAAAAACATGCAGGGTTGGGGAGTTGACCAGGCTATGTTG ACGCGGAGAGGATGTTAAAATTCTTTTTAATTCCGGATTTGGAGCTCGTAAAGACGCGGAGATTAATTTG CTTTGAAGTTTTTGCATCGAGAGATTTGTGGAACTGTACAAGCTAGCCTCCAGGATGGATGGTGAGGATA CACAGACCTCAAGTGAAGTTCCTCAAGGTGAATCTAAACCCGCTGTAGCAACACCCACTGAGGACGACAC GACCGGCCAAGATCCAAGCCCTGCAGCAGAAGAAACTCCAAGCCATTCTACAGCTTCTGGTACTGAAGGA AAACCCTCAGATGGTATTTCAGATGGGACAACTTCTGTAACTGTGGACAATGCTTCAGAGAAACCTTTAG AGGCACCTTCAGAGGAACCTTCAGAGAAATCTTCAGAGAAACCTTCAGAGATACCTTCAGAGGAACCTTC AGACAAACCTTTAGAGGCACCTTCAGAGGAACCTTCAGAGGAACCTTCAGAGGAACCTTCAGAGGAACCT TCAGATAAACCTTCAAAGGAACCTTCAGACAAACCTTCAGAGGAACCTTTTAAGAAACCTTTAGAGAAAC CTTTAGAGAAACCTTCAGAGAAACCTTCAGAGGAACCTTCAGAGGCACCTTTAGAAGCCGATGCAGGATC AGATGGCATTTCAGATGGAACAACCCTGTCGTCTGTGGACCAAACTGTGAAGGAGAAGTCCCCTGGAAGT AGTAGTGGGCACTCTGTGTGTGTTGTCAGCACCACGCCGAATGTTGTCGTGGAGAAGGTCGGTGGCGGGC TGATGTCGTGGAACCTGACAGCGACTGGTGGCGATGTCGATGGGGAGGGAAAGGAGACGGGAAGCATCTT TCCCTTGGATCTAGGCGGTGCCTCAACGATATTGACCCAGGACCAGATCCTCAAGATCGATGCTGCCTTG AAGTCCGAGCAGATCAAGTCGGGGCCCAACCCACTTCTCCAAGTCCCTCCTCAAGATAGCATCGAAAGCA TGGCCATTGAAGAACCAGAGGATCACCAAGAGGATCACCAGCAAGAAGAAGAAGAAGAAGAGAAGATTCA ACTCAACATCGACAGTGTGCTCAACATTGGAGCTGGAAGCTTTAGCACCAAGCATCTGATGAACCAGGTC ATGAGCAGTGAGATACTCATGGAAGCCATAGGTGATGATGGGATCATGGTTGCTGCAGCAGCGGTCGTTC CTCAGACAACCAGTGACGGGGAATCGGAGAACGGATCGACCACGGACTCAACGTCGGAGAAGAAGATGGA GGATAACCTCAAGAGAAGGTCTTCCAGGATTGCACACATAACAGCAAATGATCTGACCCTGAGACAGTCC ATGAGAGAAAAAGAGCAGAAGAAGAGAGAGCGACAGGAGAAGAAGCGGCAGAAAGAAGAAGAAAGGAAAG CAAAGGATTCTAAAAACGTGACGGTTGTGGAAAGTGGAAGTGACTCTCCAGATGCACCGAAGGAGAAAGG GGAAAAAGGGGCGGATATAAGTAGTGAAATTGCAAAATACCTGATGGTCATTGATCAGGAGATTAAGCAG AGTGAAGCTCAGAAAGAGGAAGATTTGAAGGAGGAAGATCCAGCAGTAAAGAAGGAAGGATCAACAGGAA AGAAAGAAGATGAGAAACAGCAGGAGGGTGGCACAGGGGAAGAAAAGAAAACAAGTCTTAATCTATTTGA AAGCCTCGGCAGGGATGCGTCAAAGAAAAAAGTGAAGGAAGACATTGTGAAGGAAACCACAGCGGGTGAC AAGGAGAAAGAGAAACCTGATGCATCTACATGTAGTCAAAGAACATCTGATGCAGAGTCAAAGAATGCAG ACATTGGTGAAGTGAAGGAAAAGTCATTAGATAAAAAGGATGAATTGGAGTTGGGAGAGGTGAAGGAGGA GAAGGAAACGGGTGAATTGTCCGATGATGAAGAAGCTCATGCTGAACCCAACACCAGTGTGTACTGGATG GACCATAGCTATGCTGCGAGTCAGGCTCTACCAACGACAAGTAGTGTACCTGCACCAGCCCCGGTGGATT CCCCTACAAAACGCAGCACTCGAAGAGATACCAGGAAAGCGAAGAGCGCCGAAGAAAGTTCTGTTGATAA TACAGAAGAAAAGAAAGATGAAGAAAAACCCAGGCGGTCTTCACGACGAGAATCAAAAGTGTCAAAAGAG AAAGAGATCAAAGAGACCAAGCAAGATAAGAAGTCTAAATCGAAACGTGATCACAAGGACAAGGAATCAT TGAGAAATAAGGACAAAGAGGACGGTCGCTCCAGGTCAAAAGAGAAAAGTAGCAGTAAAGAGAAGGAAAG GCATCGAAGTGAGAGTAGATCAAAGTCTGTGGATGACAAAGATAAGGATAAGAAGAAAAAGAAACATAAG GAGAAAGACAAGGAGAAGGACAAGGAGAAGGACGAGAAGAAGGACAAGGAGAAGGACGAGTCCAGAAAGA AGAAGTCTTCTAAAAGTTCTAGAGAAGTCAAGAAAACAAAACTTGGTGATGATGAACTGAGTGATATTCC ATTTTCATCTGAAGAGGAGGAGCATGTGGTCGATGAGGGCGAGCATGATTCAGGCAGTGATTGGACTAGT GACGATGATCCAGAGAAACTATGGTGTATATGCAGAAAGCCCCATGACGGAAAGTTCATGATCTGCTGTG ATAAATGTGAGGATTGGTTCCATGGCAAGTGTGTCAACATCACTAAGAAAGAAGGCAAGCGCATGGAGAG CGAGAACCTCAGCTGGATGTGCCAGAAGTGTACTGAGGAAGAAAAGAATGGGGCAGCAGACAAGTCCAAG GCAAAGGATGACAAGAGTAAGAAGACCAAGCAAGACTCAGAGGACCCGAGGGATGCACGCTCAAAGGAGA AAGAAAGAAGAAGGAAGAGCAGCGATAGGAGGAGAGAAGAAGAAGAAGAGGACGAGGAGATGGATGATGA TGAGGAGGAAGAGGAGAAGAAGGGGAGGAGAGGGAAGGTGTCCGATGACAAGAAGAGGAAAAGGAAGAGC GATGCAGGGACGAGGAAAGACTCTGAGTCAAAGAAAGAGCCCAAAGAGGAGGTTGCCAGCAAGAAGAAGC GACTCAAGTTCTTCCGACCCCCTCCCCCCAAGCAGCACTGCATCGGGCCGCGTTGTGAGAACTGGGCGCG GTCGGGCTCGGTCTACTGCAGTCCGGGCTGCATAGTGAAGCACGCTAAAGAGAGTATGCGCCTACTCACT GCAGAGAAAGAGAGGGCAACAGGGCTCAAAGCGAGGAGAGACTCTGCAGGTGGCTCTACTAGCAGCTCCA CGCAGTCACTGAAGCTGAGAGAGGATGAGCGCATATCTGTGATAGAGCGTCACACAGGGCGGCTACGCAC AGGGCTTACAGCACCGACGTATGAAGAACTGCCCTACTGGCTGGGTAGACATCCAACGTATGAAGTACTC AGGCCAAACATCAAACATGGATACACAACATCTTCATTCCACTCAGGTAAAGGATCGTCGAAGCACAAAC CTGAATCAAGGAGGCTCTCACACGAGGTCGTTGACCCTATCAGGAATGTCTCGTCCTCCGACACGGAGCG TAAGATAAGCACCAAGCAGATCACCAGCCCCAACAAGGACGGTGGAAATGCTGGGGCAGACAACCTTGAG AAAAGACAGCGAGAGAGGAGAGAAAAGGTTCGATTGCTCCTTGAGATGAAGAGACGGGAGGAGGAGGCCA TAGAGAGGGACCTGGAGAGGAAGAGGATGGATGAGAGCCGACGCAAACGAGAGGAGGAGAAGAGGGAGGA GGAGGAGAAGAAGAAGAGAGAGGATGAGAAGAGGAGGAAAGAAGATCGAGAGAGGAGGGAGAGGGAGAAG AGAGAGAAGGAAGACCGTCAGAGGCAACAGGCGGAGAACAGTAAGCTTGCAGGGCAGGCGTCCGAGAGTG TTAGGGTTAACGTTAAGAGGACTCTTCTGGATGTTCTCCTTACAAGGGTAAAGAAAGCTCCCGATGTGAA GAATGTAACAGCAGACGATGTGAAGAGGGTATCCAAGCAGGTGGAGTTTGAGCTCTATAAGCTCTTCAAT GACACAGGTGCCAAGTACAAAGCCAAGTACAGGACTCTCATCTTCAACATCAAGGACATGAAGAACAAGG GTTTGTTTCGTCACATCTTAAAGGGAGAGATCTCTCCCAGGAACCTGGTGCGCATGTCATCCGATCAGCT GGCATCACAAGAGCTCATGAAATGGAGAGAACAGGAGGCTAAACATGAGCTGGACATGATAGTCCAGACA GAGGAAGATAAGAAGGGGATGCACATGACCATCGTCAAGAAGACACATAAAGGAGAGGTAGAACTGGGAG AGGAGGACAACCTAGGAGAATTGGTACCCCATTCCAAAGACGAGGAGGGAGCTTCTAAGCAGTCCAGCAG CTCATCGCCGGGCACGGATCTCAAGAGCCCTTCCAGACTCTCCTTTACCTCTCCTACCAGTCATCCTGGG GGCTCCTCCCCGACCACGCCCACCTCCCCGACCACTCCCAAGATCATGCTCGTGGACACCACCGACCAAC ACAAGGCACATCTCTTTGATCTGAACTGCAAGATCTGTACCGGTAAAATACCGGCTCCTAAGGAGGACAA GGTCTCCAAGAAGAAGGCCATTGTGAGGAAAACCCCCAAGATCATCAAGAAAGTGGTGGTGAAAGAAGAA AAGAAGAAAGGAGGAGGAGCCGTCAGGGAGAAACCGGTCAAATTCTTTGGGGAGGAGATTGAGGAAAAGA AACCTAAAGAGAAATCCGTCACCGAAGACCTCTACGATGACCTGATGGAGACTGTTGGTGGTGGTGACGA TGACGACGATGATGACGATGATGATGAGGATGCTGCAGTGATCATAAGAGAGCCGGTTGATGAGGCCAAA ACACCCCCAGGTAGTCCTACACCACCTGCAGAAGTGCACACCGCTCCCAAACCCGTCAAGGAGAAGAAAG CATCGCGACCCTCGCAGGTCAAGAGGTCGATGTCGTCGGCATCAATGACATCATCACCGGCCTGGAGAGG GTTCATCTCCATGCAGGAAGTGTCAAAGTTTGTTGCCGTGGCGCACCATGTGTCCGGCCCCGCCGAGAGT ATACCCATGGACCTGCAAGACACACTAGAGGTGTGTGGTCGTATCCCCTACAAGATAGTATGGGACTACT TCAGCAAGCTCAAGCAGTCGCAGTCGACGGAGATGACCATCATGCGCTTCCATGTCTGGCAGGACGACGA GGAAGCGGCCTTCTTCTCGCTCTTCGACTACTTCTACACGCGGCAGCGCATTGGCGTGGTCGGGAAGAAC CGGCCTCACGTCAAGGACTTTTACCTGATAGCCCTGCCATCCAGCGACAAGGTTCCCCACCACATCCTGC CGTTCAACGGACCTGGTCTGCCAAAAAATCGACCACACATGTTGCTGGGCATAGTAGTCCGACACAAGGA GAAGCAACGCTCAATTAGCCTTGATGGAGAGTTGGCCCCAAAACCCATCGGCCAACCTCCCCGGGAGCCT CCAGCGCACCACGCCTCTAAGAGGAAACACCATCATCAGTCTGCTCTAGACATCACACCTCCTGAGAACA CCATGTCGTCATTCCGGTCCAGTGTCCCCACGATGCGGGAAATTTCAGATCTCATCACCCCTAAAGATCT CAAGACGAAGGAGATGTATGTGACCGAGGAGCAGCTGGTTGATCCTATCGTGGCGCAGTACGCCAACGTG GACCCGAAGGAACTTGAAGTAGAGTTGGAGGAACCGTATTCACCGACGAGGGAGGAGCAGGAGGCGCCGT ATGATCCGTCGGATCAGATGGATGACTGGCTTCAAGGGCGTAGCATGCCTTCTTCTGCTGTGATCCCTAA AGCTGCTTTCCCTCAAGTTCCTCCAGTGGTTATTCCAGAAGAGAAAAAGGGGAATCCCCTGAAAGGGGAT GGTGGTGGTGTAGAGAGCGGGGTGAAGGCAGCAGACATTGCCAGTGTGGCAGCCGATGCATCCCAGGACA TTCTGAGTGCATTCAGTGAACAGTCGGGTCTCACGGAACAACAGCAGCTACTGATCCAACTCACCAAGCA GGTGGAGGAAGCCAAGAAGGCCCTTCTGGACCGACAGATAGAGTCGCTGCAGTCGGAGATCAACAAAGCT ACAGGCAAATTAGGCAAGACCAATGAACAGACATCTGATGAAGCAGGTACCTCACCGGATGTCCGATTAG CCCAAGCAGATTCTAGTACAATGACTCCCAAGGATGATGTTACAAGCACTCCAGGAGGACCTGGAGCAGA TTTACTTCAGGAAAGGTCTAAGAGTAAACAAGAGATACAACCATTGTGCCCACCGCCCAATCTGCCTCCC TTTGCAGTGGGAGCAGTGTTGTGGACTGCTAATGCAGAAGCAGCTGCGCACAAACAAAGCCCGAATATGA ACCAACCGGAGCTGCAAGTTATGCATGGAGTGGCAACAGGTAGCACAACAGATAGCACAGCTTCTTCAAC ATCTCATGCATGGACCCAAGACATTAGCCATCAGCAACAACATCCTCAGCAACATCATCCTCCGCAACAA CATCCTCATCATATGATGCAGAGTGAGCAGCATACCGCTTATCTACAAAAAGACTTGCCAAGGCATCCTG ATCCATTGTTAAATCAGAACAAGCCACATTCACAGCCAGCTCATCATCATCCACATTCCATTGCCCCTCA CCACGCCCCTATAGGCCACTCTCACCCTCACCCTTCCCCACCCCAAGGGCAGCCCCCAGCACCATTCCAA GCCCCACCCATCTCTCAACATCCACCAGCCCCCCACCGTCCACTCATCCCTCACCAACCACTTATCCCAC ACCAACCACACCAACAACAACATCCACCTGCTCCCCGGCAACCACTCATCCCGCATCATCCACCACCAGC TGCTACTTCGTCTGTACCGGTCACCAAGAAACGTAAACTGGAGCCACCGCCTCCCGGGGAGGAGGGATGG AAGTACGGGGATGATGATAAGGGCGGGGTCGGGCATGGGCAAGATCCAGGCCCAATTGGTCAGCGAAGGC AACCCCATAGAGAAGTGGACTACAGGAGAGATGTAGACCTGCGGGAAAGCGGGGGCCATTTTGAGGACAT TGAAGAGAGGAGGCCTTGGGGAGAGGATAAACCTCAGGAGGCATGGGCAAGAGAACAATGGGAGCAGGAC AGGAGGGGAGGAAAGGAACCCTGGCCAAGTCAGCAGTGGGGGCCCACGGGGGGAAGGGGCAGGGGTAGGG GGTATGATGACTGGTCAAGAGAGGATAGTCATCCATATACAACTGATTACCAGCATAGACCAAAGGAACG GTTACTCAAAGACCCAAGGGTGGGTCATGATAGGCCTATATCAAGAGATTACGGACATGGGGCTCGACCA AGATAGTTTATGACCAAGACATTTAGTGGTTGCATTTAAGTTTTAATTTCATGGATATCATGTCAGGTTC TAGCTACGTTTAGGCTTTCAATTCAAATCACAAGATATACTAAATTTGTTGCAATGTGTTTGTTAACGTA TGGAACAAAATACTGTGGACTTTCTACAAGGATTGTTCTCATCAGTGACCCAGGATTGGCTCCTGTGACA CTTCCTATGAACTTCATCTGTCAAAGGTATAGGGTTAGTGTTAGGGTTGCAAAAATATTTTTGGTTATTT ATAGGGTTAGGGTCAGGGTTAGGGCTAGGCTTAGATATAGTGTTGAGTCCATGTCTGAAGTTCCAAATTT GACGAGTGTAGGGAATTGATGCAGAGTAATTTTTTTCGTAGGAGCATGTGTCAAACAACCATGTAGTTTG TCCTGTTGTATTTCTTATGCAAAGATACAGTTGAATGTTTTCCTCTTACTAAAATACCTCAAGCTTTCAA CCTAGGTATCCATGATCAAACAAAGAAATGCAGTCAAAGTTACACTTATAAAAAAATAGGTACCGGTGTT AAAAAATTATGGAATAATGGGACTGTTGGCACTTTCTTTTTCATGCTTGTAAAATTGTAAATAGACCTGA TATCTGTATAAAGTGTTGATACCTTTGTTATACTTTCTGTAAAATTATCAAAATCATGTACATCTTCAGA GCTATTTTTACCCTTTTTACGTGCTTGCCTTCCATCCATAGTTGTGGTCATGTCATAAAAGTAGGAGAAG CAAATTTGATTAATATGTTTCAAAAGTCTATTAATTAAAAAAATATATACTGAAGTATTATTTGTAATAC TAATATACAAAATAATAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds