Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT113988.1 TSA: Strongylocentrotus purpuratus WHL22.768987.0 mRNA sequence CCCATATCCATGCATGCTGCATATGTACACACGTACACGTACCCATGGGCTGTGAATGTTCAAATTGTAA CCAATATTCGTGATTAATCTATTTCTTTAATTACAACTGGAATCTTCATAGAGTCTATCTTTAATCAAGA GCAAGTGCAAAATGATGGACCAAGATGAAGAAGAAATGCCGCAAGAGCTGAACGATTACATCTCTGGAGA GGATGAAGATGAAGATGAAGATGAAGATCACAATGAAGATCAGGAGGATGATCAGGAGGAGGATATTGCC TTTGAAAGGCTGCAAGCTGAGCAAGCCGAGGAATCCAAAGGAGAGGGCACGATGAAGAAAACGTCCAAAC CAGGGATCGTCTACTTGAGCCGCATACCCCCACTGATGAGACCACAGAGGATCAAGAGGATATTCTCCCA ATATGGCGATGTTGGACGTGTGTTCTTACAAGCCGAAGACAAATTCAGCCGCAAAAGTCGGAAGAAGAAA GGTGGTAGCAAGAGCAAGCGTTTCACGGAAGGTTGGATTGAATTCATGGATAAAAAAATAGCAAAGAGCA TCGCCCTCACGTTCAACAACACGCCAATGGGCGGGAGGAAACGGAGTATTTATTACGAGGAGCTGTGGAA CCTGAAGTACCTGCATCGCTTCCAGTGGGGTCACTTGGTGGAGCGTCTGGAGTACGAGCGCCAGGTGCGT CAGCAGCGCATCCGTACAGAGATCTCTCAGGCCAAGCGAGAGACAAACTATTACATGAAGAGCGTCGAAC TCGGCGATCAGTTGGAGAAGATGGAGAAAAAGAAGAGAGAAAAGGGGAAGGAGTGGATGGCGAGGGTGCG TGCTCATAAACAGAAAGTGACCCAGGATGAGTTTGAGAAGAGCAAGCCAAGGAAGTCTGGAAAGGTGTCG AAGAACACTCTTGGCAAGATCTTCAAGAAAACAAACAAGTCATGACATGACATTCCATAAAAGAGGGGTT TGAATCAAGATAGTTATCAACAAATCCCTGTATGAACTTTGAACGCTATTTTGTAATGCCAGCGCAAACA ACTACCAGTATTGTTTATTCTAGCAAAAACAATTGTGAATATTGTAGTACTCTGATACCTTTTTATGACT GGTAGTGCTGTTAAATGAGTTTGTATTGTCTCATCGGCAATAAATGCTCAGCCATGTGCACTAATACATT AAATGTACTGAAGCCTGAGGGAAGCGGAACCAAACAAATGATCCATCATTTGTACATTTATATTCCATTC TTGAAAATCCAGAATCTTATCTGTAACTTTGTGAATGTTCATGTACATATATGGTAATTTAACAAATAAT GCAAGTCTCTTCGAAAGAAATATTGCTTAGTTCAATAGACTGTTGAAATAACCAAAACCAAATCCAAATT GGAAACATATACATGTAGGACAACCAACGGATTCTAGAATGTGCATACATGTACATAAACTTGTCTGCTA TGTATTGATAGTCATAATAAAACTTACTGGTTTTATAGCCTGATACTCGAGTCGCACCGCCAGACCGACG CCAAACAGACCGATTCTTTGCCATAGGATGTAATGTAAAGTTTGATCAGTCTGTTGTCGGTCTCATCAAT GTGACTGCGGTATGACTGAATGTTGAAGGCATTTGCATAGATCGATTAGATTCATTGCCAAAAAGTAAAG TGCATATTGTAATACACATAGGTACACTGTATGTAACTATATTACTATATAATAACAGTTTTTAGTTATC CATCTGTTCATATACATGTATGTAGGAAGTGAAGGTGATTTATACCAAAATTGTAAAGCTCACAGAGAAA AGTAACAGGATAAGTGTTCATGAAAGTAATGGAGTTCCTTTCAGTGTGGGAACTACATTGTAAGAGCTAT TCCTGAAGCACCTTTTTATATGCATTTAAAGGTACTATGTAGTGCTGTAGTCAAAAGTTTAACCGTCCGG TATCCGACTGCCCATGGCGGATTCCGTTTTTTATTGGACGGTTTCGTTTTCCCGTTTTTTTAAATTTAAA CAAAAAAAATTGTTTAACCGAAAACCGTCCGGTTTTGACTGGCGTTTAAACGGAATTGGAGATATCCGTG ATGTTACAGCACTAGTACTATGTCCCATTTGCAGGCCAAAAACATGAAAGGTTAAATTCCAACGGTATTT GAAAAATAATACCAATTTAGAACTTCCCTCAAAACAAAAGGGCTTGAAAATGTCTTTTAGTGGGAAAATA ACGAGCATTAGTTGTCGAATCGACTTTACTGATTGCAATCATTTTAGTAATAGTCTGATTTTCAGACCCT TATTCATGTACCATGCCAAATTGTCATACGTTTTGGGCTGCGCAAACATTCAATCAGTTTAATTTGGCAA TTACAAGTGGGTTATTGATGTAGGGAAATGCTCATGTACCCTTTACAGCTCATTTTATGTATGTTATTAC CAAAGAAAGAAAGAAGTCAGCCAGTCAATCAATAGTATCTAACAATGAAGTGTAAAAGTAAACTGGTTTC CTTGCATAATTTGAATACTAGGACACTGCTAACGTTTAAATTTCGCAGATAGGACTTTATATTCATAATT CCTGCAAAGTTCTACAGAATTTGATGTTGGCTGCAAGAGGGATACACTACCTTTAAGGGCTAGCACTACT CCGTGTTTAAAAGATTTGTGATAATGTTGTGTAAATAATTGCTGTGTGCTCAGTATCAAGCAGTCTACTG TGGTTTATGTGCGCGTGTCATAGGTAACTGTAACCTACATTGTACATGAAAAAGGGGATATGTTAAAACA ATGCATGCCAAGACAGCAACTCTTTGATAAGAAAAGACAAAAATAAAATCAAGAAATATTTATGAATAAA TAAAATAATTTTATTCTACCATTTTGTTATTGCATACATTTACAATCTAGTTAGACTTTGTCAACAATAT TCAATCTCTCTTATAGAAATCATAGCTAAGAAAAGTTTACGAGTAATGAGTATACAAAATAAGAAGATAT TTACATGTTTTCTTAGACCTGTGTAATGCCAAGTTAATTCCATTTTGAGAACAAAACTACTGTCAACTAT AGAGACATGTACATGTACATACAACAAACATTTATTTTACAAAGATTTGCTACCATAGACTAACCAAATT CCCACTTTTAATCCATGGACAAAACTCTGTACATCACATAACCATAAGAATAACCTTTAACCCGACCTTT AACCCGACCTTTAACCCAACTGGAGCAAAGGTCAAAGCAGACAATATTGGACGACCCAGCAATACACCAG TTCACTAACATATTCAAATTTCATGTGTAATTTTTAAACACAGGTTGTCCTTGACAACCTGAATGCTTGG TCGAGGCTTGCCTGACATAGCAACAAGTAATGTGCACTGACTGGATTCCAAGTATCATAGATCATTTATG AATAAAAGGTCAATAGAATAAATCGTCACTAGGGCCCCAGGAAGGAACATCCATACATTTGAATGTGTTG AATAGTAAACAGGTCTATTACTTTAGGGTAGCCATGTCAATCACATAAAAACAATAAATGTTTCATAGAA TGTTTAAGAGAACTTTCAAAGATCTGCAAAATAAATTTCATAGATACATGTAGCTGAATGAAGAACGACA GGAATATTTGAGTCTTGGTTCAGAATCCTAGTCCAGACAAAAAACACAATCCCATACAGTGTATGTGCAA TATGTGTTCTTGTTAATAAAGTGGAAGCAAAACATTTCCACTTTAAGCCAGCGATACTTATAAATTGGCC CCTTTACTGCATGCAAAATAAACACAAATGACTTTCAGCTAGACTCTTTCAACTGCATAAGTTGAGACAA CTTTTCAATTCATTTGTTTCCTTAAATATCATAATCGAAAGGTACTTTCAATTACATATTTGATATCTAT CAGTAGAACACATTTCTCTCCAATCAAGACACATGTATACTTACTTGTATAAATCAGAAATGAGCAAAGC AGTTCAGAGTTTCCTTATTGTTTCATAAAGCTGTGCATGAAGTTACGAATGACTTTGAATTTGAAGAGCC AAATGGGATGCCCAAAGTTTTTCCTGACATTTTAAGAAAATGTGACTGTATTTGCCATAATCTCAATTAA ATTGTAGCCAAAATAACCCTTTGCGTTAAATGTTGTGTAAATAATAAATTGTAAGGTTAAAATAATGACA TCTGCATATTTCAACTTTAGCTTATGCAATCTAAAGGATTTGAGAATCTCATTTAGCTCTTCATATTCAA GTCATTCGTAAAGTCAAGCGTGTAACTTTACACACAGCTTTATAAAACACCCCCCCCCCCCAGACTTGCC TCTCAAATTGGCAACATCTAATTTCCACTCTTTCATAATTAAAGAATAAAATGTTTATTACATGAGCAAA TGTGAAAGGAAATTGCAAGATTTAATTTGCTGTGTATGAAAAAGGTGATTTTATACTCTACACTGTGTTT GCCAATTTAGAAACTTTAATGATTAGTCACAATTAAATCGCTCTTAATCGAGAATTTAACTATTACAAGG TTCCCAAAATCCCTAATAAATAAATAAATGGTCTAGTGGGTACATCACCAGATTGTGGATCACATGGTCA GCAGTTTGAGTCCCGCCGCGGCACTAACATCCTTTGGGAAGACAATAATCTATATTTGCTACTCTCTACC CAGGTTAACTAAATGGGTGCCTGGGAGGAAGAAATTTCTTGAATGCTTTAGGTCCTTATCTTGGTGCCTC AGTTACAGATGGGGTAGCAATGTGATACTTTGTATTAAAGCACAGAAGAGTAGAGTATTTATAGAGTAGC TGCGCTAGTGAAACTGATATATAATTTATATAGGTATTTGGTACTACCATTTATGGGTAGAAGTATAATC TTGCAAATGCTGGGTATCCAATTTTTACAACCTTTTTTATCGAAACATCCGATTGCCATATGGGCAAATG AAAATGATGTGTATGTGTCAGCCTGAAGAATGATTTTAATTATTTGAAGTATAAAAAATACAATGCGAGT ATAATGCATTACTCCAGACAAAATAAGAAAAAAAAAAGCAATACCGGTAAACAAAAAACATCAAAAACAA AAATGTGATTATGAAGGTACATGTTGGACACTGGAAACTGCATCAAGGTTACAATACTGTGTATTGGCAG CCAATTAAAAAAGGTATTTGTTTTAGCAGCAATTTTCTTACGAACCACCAGAAAAAAAGGATATACTTCT CAAGTACCCTCAGATTAATTGAGACAAAGAGGAAGAAATGCATAAAGTGAAGACATAATTTTCCATTGCA ATTTTTCTAATAAAAGTCATGGAAACAATTTTTAGGATACTATAACAATAACCTTAGGAAAATGATCTAT AAGATTATCAAAATTAAGAAAGAGCAACCCAAATAATACAGTTATAAACCATTTTCACACTCTCAATACA CCAAATGCCATCTAATCATTCTGAAGTTCCAATTATGTACAGGCTAATTTGTATTTTTTTCTTCAAATAT TCAATTCAGTTTAATATTCTGATGTGGCATTTTATGAAACAAAGGTGGAGTGGCACATTTTATGCAGTCA ATACCATACACTTAAAGGTAATACAAAGTTTTGAAAACTGGGTGGATAATGAATCTTTACAATTTTGATA TATTTGGATGCCCCTGGGGATGTATTATAAGCTAAAAAAAAATTAGCCCCTAAAACACTTCTGTTTTCGA GAAAAATTGAATATAAAAATTTACTGGTGCTCCCGGTAAATTTTGATAAAATTCAAATAGCGCCTATGGC CGTACAATGGTAGCTGCGACCATGAAAATCTCAGAATATGTAGTTGTGATATATAATTTCCAAATGGGAA TAGCTAATCAGTCGATTTTAGTCAAGAAACTTTGTTTCATAGCTAAATTAATTAATTAATGTCTTGACTT TAGACTCGATTTCAACCGCGACAACGATCAATTAATATTGTGGGATTGCATATGCTTCCAATATGTTAAT TTGAACCAAATTCATCACCCCACCAAAACTTTGTATTAACTTTAAATAATTCTTGATTTCCACCCTGAAG AAAACACTATACCAAAGCTGAACCATAAACCTAATCTGAACCCTACCAGTTGGCTTTAAATGCGTTGTAA CTCCACCATAAACTTCTTTCTCCATATATTTCTTTCTCAAAATGTAATTCATGCCTTCTTCATGGACTTG GTAAATGTATAAAGATATCATAGCTGGATGGACAGAGCAAATCAGTTCCATCATTACACTTTCAAAAATG CTTTAAAGCCCCACTGTACTACTTGTAGCTACTTGTTCCCTCTATATAGAAAACTCACAATCGGTGCCTG TTGGTCCCCCATGATCCTCTTTTTCTTATGTTAATTGAGAGCCACCTGTCAGTGACCTTGCAGAGTGGTC TAATCCCCCCTGGCCAAACTAGTCCAGACGGGCTTTAAAGACAGAATACGTTGCTCACACATTGAGCTTG GACTCTGTACAGTCGCTAGCTTATTGATGGGCTAGTCCAAGCTACATGTATGTCCCATGCGTTACTAAGT ATCATAGAATTTTATCATTTGGAATAGTGAACATTTATTGACATATAAATATCATTTCATTTGATGCTCT GTCCCATTCAAGCTCTAGTAGAGCTTTCTAGCGAGTATCAAGAACATAAGTTGACATAAAAATATCACTT TATTTGATGCTCTGTCCCCACTCAAGCTCGAGGAGGGCTATAAAGAATCAAGAACATCAGTTGACATAAA AAATATCACTTTATTTCATGTTTTTGTCTGATTCAAGCTCTAGTAGGCTGCTTCATACAGTCATCAGATA CACTGAAATCTTTGATGTTGTCGATTAAAGATACAGGCTAAAATAATCTTTGGAGTTTCCCTGATACTTT ACTCTGAGCTAGATGAATCGTAGCATCTCTATCACTCATCATGCATTGAACACTACCGATGATGCATTAG CAGGGACTGCTGGTCCAACGTAAGGATGATGATGTTGTTGATGATGATGATGATGAGGGTGGTTAGAGTG TGGATGAGTGTTGTAGCTACTGTCTGCTCTTCTACTGCCAGGGATCTTGGAAAGGCGAAAAAGAAAGAAT TAAAAAAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds