Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030974080.1 PREDICTED: Strongylocentrotus purpuratus double-stranded RNA-binding protein Staufen homolog 2 (LOC582369), transcript variant X1, mRNA CCACTTGATTTTTTTTTCTATCACAGGGAACAAACAGAAGAGCCACAAAGCTTGCAACCATGTCGACCCC AATGTCTCACTCTGCAAACCAGTCAGCTGCTCCAGCTGTTGCCACTTCATCACCGTCTGAGGCTCATCCC ACTGGCCGGCCTGCAGGGATCCTTCCCATGCCCGCCCAGTTGCTTGCAGCCTCTCATGGTGGTGGTGGTG GTGGTGGCGGTGGCCCTCCTGCTGCCTCTGCTTCTGCTAGTCCAAAAGGGACGCAGCAAGACTCCAATGG CGGTGTCGCCGTGCCCAGCACGGGTGGCGGGGACAATGCTGCACAGGGGCCTGCGCAAAATGAAGCTAAC AACATGGCAAATACCAAAGAGAAGACATCGATGTGCCTGCTCAATGAGCTGGCACGCTTCAACAAACTCC AACCCAAATACGAGCTCGTCAGCGAGAAGGGCCCTCCCCACGAGAAGATCTTCTCCGTCTGTCTGACCCT TGGCACTCAGAAATACGATTCGTCTGGCGCCAGCATCAAGAAGGCTCAACACGGAGCCGCAGCCAGTGCC CTGGAGAAGTGTGGGCTTCCCCATCCCGTCCCTAGAAACCAGCCCAAGAAGTTCAAGCACAGGCCCATGA ACACCAACACTGATGCCATGACCCCGACCGTCAAGCTCAACAGCCTGGCCATGAAGACAGGCAAGCAGGT GCACTACATGCCCCTCAACCCTGTACCCCAGCGCCCCTTCTACGGAGGTTACCGTGGCCCCAGGAACCAA GGTATGCCCCCTCCTAATCATGGTGGTATGCCACAGGGTCCACCACCGCAAGGTCCACATCCCAACCAGC AGCAACCACCTTCCCCACCACAGCAGCCACCAGCAGCCCAACAGCAAGGTCAGGGGCAGCAAGGGCAGTC TGGACCGGCTCAACCCCCTCCTACATTCCACCCTCCTGGCCCTCCACAGATGCCACCACCGCCTCTCCAA CCACAGCAAGGGCAAGTTGCCCCTCCCCCAGGCATGGCTCCACCCCAGGGGATGCCTCCCCAGGGCCCAG GGGGAATGGAGCAGCAGGGACAGCAGGATGGGGCGCCACCACCTAATCAAACACAACAACAACATCAGCA TATGCCCCAGCAGGGAGGCCCTCCATATCAAAACAACCATAACAGGCCCTACTATCGGTACCCACGGCCA TTTGTGCACTACATTAAGGTCACCGTCGGCGATCACGAGTTTGTGGGGGAAGGAAAGACACAGAAGGGTG CCCGTCAAAACGCCGCCTTCCGTGCCCTGACCGCCCTGGAGAACGAGCCTGCATCTAAAGTGGACATGGC TACGACCACCAACGTGGTTGTGGACGGCAATGGGGATGCCCCTAGTGGTGGGGAGGAGAGGAATGTCAAG TCCGATATCAGCCTTATCTATGAGGCTGCAAACCTTCATAATCTGAATGTTGTTTTCAAGGTTTTGGATG AGCGAGGGCAGCCCCACCTGAAGATCTTCAAGCTGCAGTGCACTGTGGGAGAGTTTAACACTGAGTCTGA AGGCCCTTCCAAGAAGGATGCCAAGCGTAAAGCCGCTGAGCTGATGCTCCCTAAACTCAAGGAACTCCCT CCTGTCGCAGCTAAGCAGGTTGTTATCCAACATCACATGATGCAGCGCAAGCTTTGGGTGCAGGACAAGA ACAAGAAGAGGAAATCCAAGTCTCTGCTGAAGACATCCCCAGAGGACCCCAATTTTGGCGCTCCAGGCCT TCACCCTGTCAGCAGGCTTGTACAGATTCTTCAGGCCAAGAACGAGCGTGAACCTGAATTCGCTGTGACT GAGGAGCGTCCTCTGATGGAACGAGCAGGAGCTCACATGATACGAAGACGGGAGTTTACCATGCAGGTGT CTGCTGCATCCAAGACAGCCAGCGGTAAAGGGAAGACCAAGAAGGATGCCAAGAAGCAAGCAGCAGAGAA CATGCTGAAGCTCCTTGGCTACGCCCCTACGCCTGAGGAAAGTAATGGTGTGGGCGCAGGACAACCCTCC AAGTCAGCCCTCAAGACTGGATCCAAGACTTTAGATCAGGAGGGGGACAGGAAAGTCACTTTCAAAGATG AGAAACAGAAGAAAGGTTTAAAGAAGGACGAGAAGAAGGATGGCTCTCCAGCCCAGGTTAATTCTGTGAA AGGACTTGCTCCTGGATTGCTTCCCATGATGCCAGGCATGGGATCACAGCCGTCACAGATCTTCCCATCA GGCCCTGCTCCAGCGGGAGCTCATAAAATGCCCGGACAAGGTCTAAATCGTGCCCCTGGTGCACCTGTCA CAGGCTCTAACATGAAGGTCTCCCCAAAGAAGAATTCCCTGCGTGACATAGCCCAGGACCTTCTTAGCCT TGGACACTCCCCAACCGCCGAAGCTCTTCTGAAGGGAACATCTGGACCTCATTCCATCCCCAACCTCTCT AGACCAACTCAGCAGCTAGAGTACCTTGCCCAAGTTGGTGGTGTCAGCACCAAGTTTAACGACTTCCCCA AGGGAAATAAACCCGAGTATCAGTCTGTGGTGTACATCTCTACGGAGCCTCAGTCGGCCTATCGTGGTGT GGGTGCCACCCTGGAGGCAGCTCATGATGTAGCAGCCATCACTGCCTTGAGATCTCTGGCTGGCATCACT GATGGGGGCGACGCCAACAAGAATGGCAGTGGACGATAAGTATAGGAGGTTTCCTTGGCATAACCTGTGA TGTTAGATGCGGAAACGAAACAGTGATGTAATCAAGTATATTGGGAACGTCAAGGAGAAGAAAAGAAAAT GATTATAAAGTATATTGATATAAATTGATGATTTTATGTCATTCTCATTGCACTTTTGTTTTGACTTTAA TTTAATTCTTACACACTTTTGCATGCAAACACAAGAATTTATTTCATTATATTTTACCCTAGTTTTTTAA ATATAAATCTCTGTGAGGCAACCACGAGGTTTAACTCTTTTAATATTTTAAAGATAGTTCTTATAAAAAG GTGTATTTGATTGGTGAAAGGAAGATTTTATTAGATGATATTACAAAGAATAAATGTATGTATATTCTTA ATGTTTGCATGCAGAATCTGTCTCAAGATGACTAAGAATAACATTGAAAGTACCTAGAGATTATTAGGTG TGGTATTGTGAATATTGTGAATCAAAACTAAAAATTGCTTAAAAGTTCATGTTTTATGCTTATGGATAGA AGTTGCTTGCATGTAGTTTTAATGATAGTTGGATATTTGAACTGAGGCCAAAATGGTGGGAAAACTAATC TTCTTATTTTCATCTTCTGCTGTATTATCAGGATTTGAAAGCCGCAAACTTCATCTCTATCTACGTTTGC GGCGTTATATCAATATGGAGACGATGGAGGAGAATTTTGATTTGGTTTGCCATTAAGCTTTATAAAACAT GTATTTCTAAATGAGTCTGTATATATATTCACACTACCATGCTGTGTATACTTAGAAGAATTAAAAGTGT AATGACAATTAGATTGATGATACTCAAAGTTGAAAAAGCTGTGGTAGGTTCATAAAATGGAGAGGGCCCT TCCATTGCTTTTTATTTGAATGAAAACCTTTGTTTCACAATGCAGTAATTGTTCAAGGATTTTAAAAACT GAGATGCTGTAAAAGTCAGCATTTGTTACAAAGTTGGCAAAGTGGAAGCAGAAAATGAAAAGGGAATTAT TGAAAATGAGATAAATCATTGAGAATATCTCAAACATTCATTGAATTTCTGCTTCCACATTAAACAATTT GTATACACCTTTAAAATATAAAGGTTTGTACATTTATTATGATGTTACATTATCATAGTTATCTTTTCAG TAGCTGATGCACCAAAACAAAAGTTTGGAAGGAAAGAAGAATAAATACTGGTAACATTGTATGAAGCAAA GGTTTTGCTACAAATGAAATCTTCAATTTATTATACATGTGTGTATTTGCGTATAAAATGTGCTTTAAAA ACGGGGCGGATTCTGCTCCTGCATCAATTACCTGGTGTATAGTTCTTTTATATCCTGCCTGGATGTATTT TTAAAAAGTATTTTTTGTATTCTTTTGCTACACAGCTAACATTTATGATATGTATGTATTTATTTAAGGA ACGAAAATTGGACCTGCCTATTTTATGAAGCAGCCTGTCAAGACTATTCAAAGGCATATGCGTGTATGTT ACACGTGGTCCCATAGATATTTTTAAATCCACCATAGTAAGGATCCACACCTTTCTTTGAATTGAATTAT TTTCTACTTACCCTTTAAGTAATCTCACTGTGCCATTTTCTGTTTACCTGCTATGTGTATGACATACAAA TGTATACGTTAATGGCGTTTCTTCAAGATTGAAGTAGAAAATCTACAACTCGTACGTTCATTGGAAACAT GGTTGATTCGCCAAAAGATTTTACAGGAATTATGGAAAGACCCATATCTTATTATTGCACGTTGGATTAT CAATATTAACTTGCATCACTAGACTTGTGATGAAAATATGATTTATGTTTCTATGGTTACGGATGATTTA GAGGAATCATATCGAGACTTGTGCTGGGAGCCATTTTTGATGGTTTCTTCTGCCATTCATCATTAAAAAA ATCTCTTGGTTATGCAATATATAGTATCCCCCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds