Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030975021.1 PREDICTED: Strongylocentrotus purpuratus band 3 anion transport protein (LOC587119), transcript variant X2, mRNA GCCTGTAAGCTCCGCTTTACCAGCTCGCATTCATTCATATCAAGACAAGTGGAGCTAGAGCTAGATTGGG ATCTTCTTCTTCTTCGATGCAGTAATAGTATCTTCATTTGTCATTCTTCCCCATACAGTACATACACAGA GCCAGAGAGCTCGAGAGGGTAACAAACCCTTGAATTATCTAGAGCTAATTTGGTACATGAGAGTTACAAC CTTATTTAGGCAGTAAGGAGAATAACCAACAGCCAAGATGTCACAGAATGGCCGTCCCGCTACATCAAAG GAGAAGAGTGATGCAAGTCTTAATCTTCAGGTTGAGGAGCTGTTAAAGCCGCCTGAAAAGCTCCCTCTAA CAAGCAGTCCCTTGGATGGGGAGCCAGAGACTCACTTCCCTCAGTTCGGAGAGAAGGATTATGAAAGCCA TCGAAGCGAAGATGTCCTAGTCCACCACCAGCTGGATCCATTACCACAGAGAGGTTCTTCCAAGAGTTTG AAAGATCATGATGCACAGCACCAAAAGATACGCACCAGCCACTCCAGCAAGAGCATCGCCGAGGCAACGG AGGAACTCATCACCAGTATTGCTGAAGAAACTATTGGAGATAGTGTGGATGGGGGAGAAAAGAGTACACC GAAGTTCATCATTGGAGAAGACGATGGGGCTGAGACACCAGTCCGATCTGAAAGTCAGTCAGATGAGAAG GGGCTTCATGCAGAGGCAAACTCAAAGTTCAATGAGAAGCCTGGATCTCACAAGCACCATCGTCACCATC ACCACGGCAAGAAGCAGCGCAATCTGTCCGATGACCCCAACGAACGTCTACGACAGGGTAGCGATGTCAA TCTCAAGATGCACGACATCTCCATCAAGATCGGCGGGGATGATGATGAGGAGGAAGGAGAGATGAATCCA TCCATTAGGGAGACCATGGCTGTCCATCGTCTTGGTGATATGTCAGGTGGAGGACGCCACCACCATTCTT CTCGCAAGCACAACGTGAGCTCCTTTGTCCATGTGCGCGGGAGAACACCCTCAGGGGAGAAGAACACATC ACCGCGAAAGAAGAAGGAATACGATCATCGGCCCCACGAGGTCTTTGTGGAGTTGGATGAGTTGTACAAG GAGGAGGGCCATGAGATGCAATGGAAAGAGAAAGCTCGCTGGATCAAGTATGAGGAAGACGTTGAAGAAG GGGCGCAGCGCTGGGGTAAACCTCACGTCGCTTCCCTCTCCTTCCACAGTCTGGTGGAGCTTAGACAGTA CCTAGAACATGCCACCGCTTTGTTTGATTTGGAGGAGACCAACCTCTCCAATATCTTCCACCGTATCGTT GACAGCATGATCAATGCCGATCAGATCAAAGAAGAGAACCGAGCGGACATTATGAGGGCGCTATTGCTCA AACATAAGCACGTGAACGATGGCGGCAACAGTATTCTTCGAAACTTCTCCACCATTTCCCTGGGTTCCAT GGATGACAAGAAGGGTGAAAGACACAATGAGAAACATCATCACCACCCCTCTGGCATCTTGAAGAACCTG TCATCGATCAGTCTGACAGGACACGGTCAGACAAAGCCTGAAGCTGAGGTACGCATTCCGATGATCAACA AAGACGGCAAAGCCAACACCAACGGCTTGTCCAACGAGAACCAGAATGCATCGTCTGGTGCCTTCAAGAC CACACCCTCTTCAACATCTCTGATGAAACTTGCCCATAAGCTGGACCACAAGAAGATCGAAGGCATCATG CGCAAGATCCCCCAGGATGCTGAAGCAACCTCTGCCCTGGTGGGCGAGGTGGACTTCCTGGAGACCCCGG CCGTCTCCTTCGTGCGCCTTGCAGAAGGAACCATCCTGGATAATTTCTCTGAGGTGCCCATCCCTGTCAG GTTCCTCTTTGTGATGCTGGTGCCGACCCATTCGGACATCAACTACCATGAACTTGGAAGATCTTTCTCT ACCCTGATGTCCAATGATCACTTCCATGAGACTGCGTACCAAGCAGAGTCAATGAGGGATCTCCTGACAG CCATGAACACCTTCATCGATCACACCATCGTACTACCCCCGGGAGACTGGGACAGGGAACTGCTCCTTCC GGTACTCCGCATGCAGCATGAGAAGATGAAGAAGATGAGGGCCGAAACGCTAGCAGAGGAGGCTGATGGG GACATGACGGTCGTTGATATCTCTACCAAGCAGCAACCGTACTCAAATCTCCCTGATCCACTCAAGAGGA CAGGTAAGATCTTCGGAGGCCTGATCAACGATGTCCGACGTCGCTACCCCCACTACTGGTCCGACATCAG GGACGGAATCAACTTCCAGTGCGTGGCTGCTTTCTTCTTCATCTTCTTTGCTGCTCTCTCTCCAGCCATC ACGTTTGGCGGTCTGTTAGCTGATAAGACTGAGAACTGGATTGGTGTGTCTGAGACCATTGTTGCCACAG CGATCAATGGATGCATCTTTGCGCTGCTCTCAGGACAACCGTTGACCATCATTGGAGTGACCGGTCCTAT TCTTGTCTTTGAAGAAAATCTGTATTCGTTCTGCACCGACCGCAACATTGAGTACCTTCCGTTCCGGGTT TGGGTCGGTATCTGGCTCTTTGTGATCATCACCGTCATGGTGGCGTTTGAAGGGAGCGTTCTGGTTCAGT ACTTTACACGGTTCACAGAGGAGATCTTTGCGTTCCTCATCGGACTCATCTTTGTCTACGAAGTATTCAA CAAGCTTTACAAGACCTTCAAGACGCATCCTCTCTTGGAAGACTACTGCGTGGTTCCTGGAACCGATGAC CCCATGAACTACACTGAGCTCTGGACCACCTCCTACACTGAATACACGGATGAGAACGGAACTGTCGTGT ATGATCTTGCCACGCCTTCATACAACATGACTGGCAACATGACCGGCAACATGACTGGTATGGGTGTCTG TTCTTCAGCTAAGGTGGTGGTAGATGGCCAACCAAACACTGCTCTCTTGTCAACCATTCTTACACTCGGC ACTTTCTTCTTGGCTTACTTCCTTCGCAAATTCCGACAAGGACGTTTCCTCGGAAGGAGTGCAAGGAAGA TGATTGGAGACTTTGGAATCCCTATCTCTATCCTTGTCTTTGTGAGTGTGGACTTCTTAATCAAGGCTAC ATACACACAGAAACTGGATGTCCCCGATGGTCTGAAGCCCTCCGATGTGTGCAAGCGTGGTTGGTTTGTA AACCCTCTTGGTATCAACAAACCTCTTGGTATCGGTCTCATGTTTGCTGCAGCTATCCCTGCCCTACTGG CCTTCATTCTCATGTACATGGAGACACTCATCACCGGACTGATTATAAACAAGAAGGATAACAAGATGAA GAAGGGATCCGGCTTCCATCTCGACACGTTCATCATTGGTTGCATGGCTGTCATGAACGGTCTCTTAGGA TTGCCCCTGGTCTGGGCCGCCACCGTCCGGTCCGTCACCCACGTCGGGGCCCTGTCCGTCTTCAGCAAGT CCCACGCTCCGGGAGAGAAGCCAAAGCTCATGAAGATCATCGAGCAGAGGGTCACTGCACTTCTCATCCA TATTGTTATAGGTGCGTCCATCGCCATCTCCCCCCTCCTCCGGCAGGTGCCTCTAGCCGTTCTCTTTGGT GTGTTCCTCTACATGGGTGTGACCTCACTCAATGGTATCCAGATGGTAGAGAGAGCTAGTCTCCTCTTCA TGCCCGTCAAACATCATCCTGATACACGCTATGTCAGGGAGGTGCGTACATGGAGGATGCACATCTTCAC CATCATCCAGCTAGGCTGCCTTGCTATCCTGTGGATCATCAAACTCACTCCGGCCGCCCTGGCATTCTCT TTCTTCCTCATCCTCCTCGTACCGATCAGGAGTCAACTCAAGAGGATCTTTACCAAGCAGGAGTTAGACG CGCTTGACAGTGATGAGGTGGATGCTAATGAGGATGAAGACGATGAGTATCAAACTGTCCACATGCCTCA GTAGAGGTCAAAGGTCATCCGCTGCTTTCTGTCTCCAAGGGAGAGTGTTGTGTTGAAATCTTGCTGCCAA TAAAAAACGCACTTTCAACCCGAAATGTCTTCTCTGATTCCCCACCGAACTAATTCTTCAATATCATAGT TGTATATCAATCGTCATGAAAGGTTCAAAGGTCATGTAAGGTTAAAAGGTCATATTGGCCCTTTGTAACA TAATTAGATATCAACTTTGTTTGAGCCTTGTGTTGAGCTACTATTCTATTATTGAAGTTTATTGCTTCTA ACTGCCTTCCAACCTCTTGCATGAAAAGTGTGTATTGTTTGACGTCTAGCCCCCCAAAACACCACAAAAT GTAATTTGATTCCTAAACCTGTATATCAAGTAGCATATTGCAAACTATATGTAGTATGTAGTATGTTGCT AGCATTACCGTTCATGATAAATGGATGTACCCCAAAATACACAAAAATTTGCAGAGAATTATTTCTTAGG GTGCAAAAGAATTGTGCAGAAATATGTATCATTTACCATTGTAATAACAGGGTTTGAAAATCATTGTATC ACTGTTGGGTAACGGTATCTGTGCAGCACTTCACATTATTCAAATATTAATTGTCTTGATAAAGTATGAT ATTGTCAACGTAGAGCCAAATGGGTGTTTACTCTGTGTTTATGAGTTAATGCCCTTCTGGCTCTGAACAG TCAATATGTACAGTATGAAGAGTTGTTTCTGTCTGACAGTGTACCCACAGTTAAGTTTGCACCTTGGTAG GCACCGAGTAGTTCCGACGAAAGGACAAGTAGGTTAAACCCCCATGCTCTTACCCTACATGATATCTACA GACCATCGGCTCAGAGCCAGAAGGATGTTAACTCGTATCATTGACTAAACACCCTTCTGGCTCTCAACTG ACGATTTGTTAATTAATAGCTCATTATCAGAAAGACCTTCACGTTGAAATGCATTTATAGTGAAATGATA GATGCCTTTCAGCGTTCATGTATTCTCGCACAAACTCATGAGGATTAATCCAACTATCTGGCTAGGATTG CATTTATATATATGTTATTATTTCATGACTGCATTGTACAGTTCTATGGGACAAAATTTAATTGTTAACG TCATTGCATTGCATTTTTATCAAGTACTTTTTTTCTACTCTGCCTTCAGTACTATGCAAATGAATTTTGA AATTGAAAGAGCACTTAGGCTCCAACAGAGGCTTTGTAAAAAAATATATTAAAAAGTAGTGTAAAATATA ATTAAAAGATGTGTTATTTATCTTTCCATAGTGTTAATATTATAAAAGTGATTAAAAAACTATTTTGCCT ATTATTAAAGAGTACTTCTTTCTAAAAAAAATGATTTGATTAAAAAAAACACTCTTTCTTTGAGTTGTCT TTCTGTAATACCAACTTTATCACTATTTTCTCTTCGTTTTCCCCAGTCAGTGATAATTGAAAGAATGTAA GTTTGACTTTAATGATGTAAAAATCATCACTCTTTTGACTGAAAATGACACCAAACTGTACTTTGTGAGA CAATTATTGCATCGCTTTCTCCTCGCTGAAATGATGTTTTTGAAGCATTTTGTGGAGAAAACTGAAAAAT AGGTGTGAAGCTTTGGCGTATTTATAAAGATAATTCTGTTTGTGATTGTGTCTTTGAGTTGTCATTTTCT GTGTAGCTGTGAGAGTTTTCACATATTTTGTACAGGCTTCCAATAACTCAAAGTCTCTGTGAAATATTAT ATAAATGGTGCTTTCATTAAAGAAAATATATTTAATTTGTTTATATAAATCCATATTATTTTTATACCCT CCTAGTAATTCTCTGAAGCTTTACTGAACCTAAATATAATCCTATTTGACAAAGTTATCTCTCAGATTAT TTTACTATTTTCATCAAGACCATTGACCTTAAATAGCCATTTAGTTTTTGACAAATGAAATGATTATATT CTTGTTTTGAAATAATTGAAGATTGTTATGAGATTTAAATAGTAATTTGGTGATAGAGATTTTCATTCCA TTAACTGACAAACTACATTTTTTATCAATCTTTTTTCTAATATTTGTTATGGTTTTCACTGAAATAAGGC TGTAATTTGTAAGTGGAGATACAAACAAATTACACAAACAGAACTGAAACACATACCTTTGAATATCATT ATCTACTGAAATTTAAATATTAGTATTTTCTTGATGTTTCTATATATTGCTTTAATTACTTTGGTACTCC TTTTATAAATGGAACATTATGGTAATTTTGTACTGCTTTCTTTGTTTGATGAAACACGTTTCTTTTGGCG CTACTAAATGATATCTACTAAACCTTGTACTTGTATGGAAAGCCTTTATTTCAACATGTATCCTTGTGTA GGTATACAAACAAAAATTGTGCTCATTGTTTGCATTGTGACATTTGCTGATTTTGTATATGTATATTGTG TGATTCACATGTCTATAAGCATGAGAAGCGTTAAATTACAGTCAAACCTGTCTATAGTGGCCACTTTTTC TGTTTCCCTTGGGTGACCTTAATGGACAGGTTTGACTGTATCTCATTCTTCACTTTTAGCAAAGATGGTT GATTATATGATTATACATGACGGAAAAAGAAATTTGTTTAACAATTTTGTATGCAAGACGTTAAGAATTG TGCAGCTTGAGGTTACATGTATGGAGAAAAAAAGATTTTAAAAATATGACATTTTATGGCTTGTGTGTGA TGAATGAAAAAAGAAATGGCTGGAGGGAGCATTATTTACATGGCTGGAGGAAGCTTTATTTTAATGGTGC CAAAGTTTGCATTTTTGTACTTTATCAATCAAATTTATTTTGTTATGTAATACTTGTATATATGTAGAAA ATATCAATTATCTTGTTCGGCAGTCCATGTTATGGGGAGCGAAATATTTTGTGTCTGCAAAGAAAAATAC TGTATATTCCTGCATATTGCACAAAATTGTAAAATAGTTCAAAGGTTTAAAGAAAGGAAAAAAAATCAAA ATCAATTTTGCAGTTTTTATTCTACAGTAAAAAAAACTTTATCATATGAATTTTGTGATAATCTTTTAAG ATGAAAAAAAGGCACATTTGCTCTATATATTTGTTAATATTATGTGTGGGTTCTTTCTATCTCTCTTTCT TTTTTTTTCTTTTTTTTTATGAGACTGCATAGATGCTATTTTTGTATGTTAGTATATTCACGGACATATT GTATACCATGTTTTATGTATTGATGCAAGTAATGTATGATTTTTTTTTACAAATTGATGTTGCTTAATTG GAGTTAATTGCATGGGTTTGGAAAATTTCATATTCACTTGTTCGCAATATAGTGTTTGTCTGTGCTATTT TTTTGTTGCACAAGATTATTAAAAGAAATGGAAAAAAATTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds