Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110313.1 TSA: Strongylocentrotus purpuratus WHL22.680784.0 mRNA sequence TTTTGGCTTCATGGAATCTTTAAGAATCTTCAAGGTCTTCTTTTAATTTCACAATCTGACAATTTGTTTG TTTGTGTATTCTTTTGTCTGTCAACTACTACTCTTCTACTCTTTTTGTTGTTGTTTTTTCTTTATTTTTT TATTGTGTCTCACACTAGGAGGGGGCGACCAAGCTCTTGCGCAATGACCTGCGTATCGCATCCAGCATTG ATGATGAGATTACTGCTCAGGAGTACAGGAGTAAGGCATCCCCACGATCAGTCCTGAAAGCCTCCCCTCG ATCAACAGGTTCCTCACCCCGCGGGAGCTACGCCAGCAATGGCCCTCCAGACACAGAGTTCCTCAACTCT GAAGACATCTACGACTCACTGCGCCGAACCACCGCCGAGATTCAGAACTATATGCACAGCAGCCGCGACG ACCTGGACCATGTGGCTGTCACCAAGGACACGCGGGTGGACAGTGATGAGGGCATAGCAGATACCATGGG TAGAATGACAGTGACCGACGGTAATTACGAGGATGAGACTTTCCCCGAAGTAGATCACCAAGATATTCTG GTTCCTCTTTTGACTGAGCTGTCCAATCATAATGGAAGGTTTGAAGAGAGAAAGAATGCAATGATGCAGC TAATCCGTCTCACCCGGTCTGAGAGCCTCTCGCTTTGGGATGATCACTTCAAGACGGTGCTCCTTCTTAT GCTGGAGACATTAGGAGATGTAGAGTCATCAATCCGAGCCATGGCACTGCGTGTCCTTCGAGAGATCCTC CGGAATCAACCTGATCGCTTCAAAGACTATGCTGAGCTTACAATCCTCAAGATATTGGAGGCACACAGGG ATCCACACAGTGAGGTTGTAAGACAGGCAGAGGAGACTTCAGCCACCCTGGCTATTTCCATTGCTCCTAG CCAGTGTGTCCGAGTCTTGTGTCCTATCATCCAGACAGCTGACTGCCCCATCAACCAGGCTGCCATCAAG ATGTTAACCAAGGTTGTTGAACTGATGTCAGAAGCAGACGTACTGGAAATCTTACCCGAAGTGATTGTAG TTCTACTCAAGTCGTATGATCACACTGAGAGTAGTGTCCGAAAGGCCAGCGTCTTTTGCCTGGTGGCCAT CTATAACATCATAGGAGATAAACTCAAAGAGAAGCTAGCGGACCTACCCGGGAGTAAGATGAAGCTGTTG AACCTGTACATTAAGCGTGCTCAAGCCGAGAAAGAAGCTCAGACGCCCTCTCCAAGTAGTCCTTCAGCTT TATCCACTGGCAGCAGATAGTAGCCGTCCCAATATCAGACTGTACGCACTAACAAACACATGCCCCTGTG GATGGGACTGTTATTAGAGACCTGAGCAAGAACTCTGAATCGGTGCACCATCAGGATACATTTACATGCC ATAAGTGTGTAATGAATTCAATAACCTGCAAGCACTCTTCTCAAGTAAATGTATCCGCAATTAGCTGACC CAGAATCAGATTGTCACCCGCAGCACATATGGGAATCAATGGATGGGACTATTAGGAGAGAACTGATCAG GAATTCTCACAGGTAGTGCAACATCCATGACTGTAGTATAGGCTGTTAAAGTGTGATCTACTCAGAATCC CATCAGTTCTCTCTTCTGGTAGTAGAGAGTAGTGGATCAAACTATGTTAACTAACACATACTCCTTAGGG TGGGACTGTTAAAAAGACATGATGAAGAACTCAGCTACTTAGTCTATTATGACACTGCACTATATTTATG TGTGTCTAGCAACATCTTTGAAAGCGACAGGGAATTCTCTACAGGTTTTCCTTCACTGTCCGAAGATCAG ACTTTGTAAACCATCACACTCGCACGCCTGCACCCAACTATGGATAAGACTATGGGCAGAAGTAAGGTGA TTAGGGATTCATGTGCCACTGCTTAACATGAGACTATGCGAGCTGTCTGTCAGGATCTCTTAATAATGCA CATTCTAAATCAATGATCTCATCAGGATTTCAACCTTTGTTTAGCTCCCTCTTAAGAAATTAATCAGCTC ACCTGCTGAGAGCAAGAAGGTCACTAACTCTATGCAAGTGTATGTGATTAACTCCCTACTGGTTCTCAAT AGAAAATCCCTATTTGTCAATGCCACTATTGGCCATTGTTGGAAATAATGTCAATATGTTCTTTATGAGA GGCATGTATAAGGCTACAAGTCATCCTTTCTAAAGGCTTTTAAGGTCACAACACTTTGGAAAAGTCATCA AAAGTTCCTGCAACAATGTAGCCAGGTGCATACTTGTCAGTATACATTGTACATGAACTTATGAAAATAG ATCAATGCAGTTATGGATTACAGAAGATTAAGGCACCCTTCTATAAAAGTATTGAGTGCATGAGGTACAT CTGTACTTATGTAAGGTAATATTGCGCAAAAGATAGGACATTAGGTGGTATTGATTGAAACTTGCGACCC TTGGTGAGCAGTTGAATTTAGGTAGCTAACAACATTTTTGTATGAAATATTGAACCTCACTGCCATTTAT GTCAAAGCTGTGGTGATTTGAGAACAATCTCTTAAGGGAAGATGAACTATAGTGTTATTGGCTGGCCAAA GTTTGATCATTTGTATTCTTGATATTATCAAATATAAACTCATTATTCTTTCATTTTGATGACTTTTTTC TCAAGGAAACTTTTAAAATTGACTAATATACTCAGATTGAATTAATATCATTCACAAATTGAAGATTCTA GAAGCAGTGTACCAATTGAACACGAGAATTTAGATATTTGATAATAGTGAAAAAATTCCAATAGGATATA CAAAAATATATGACTCACAAATAAGGAGAGTGTTAGCGGGCAAGAAATTATCATTATTATTCATATTTAC ATAATGACAAACACATATCTTTGGGAAAAGGGGCCTCCTTATTATATTTTGTATGAGAAAGTTGGCATCA TTATTTGGGGGAATGAAAGAATTTTTGATTGATTTATTTGAGGGCCAAATCAGGAAATTGATAGAGCAAT GGTTTTCAGTCCAATGTAGAATGGTTTTGAATAATGTTGAATTCTGGTCATTTGGTTTTGATGTTACACG TATCTGAAATTAACATGTTTATGGTATAGACACCAGAAAGATAGATTGAAGGAAATATGTATATAATTGC ACAACGAAGAATGATTTGGGCACTTTTCGTCTGTTTGTTCACATACATAATGGTATTTTAGCAAGCCTTT GAAATGTCAAAATTGTATTTATTGTATGCTATGATAAAAAGTATAACAACTTGGCAAGGACACAATAAAT GTCTATTTAATCAAGAACAACTTCTTCATTCACCACTATCACAACCATTTGCCCAAATGGTATTGAAATC TGGATCAATTTAGCCAAAGAAAAACATGCAGCCCTTTTTGTCCCCTGCTCATATGTTTCAATGTGTATTG TTTATTTTGTATTATCTCTTTTTGGTCAGGAGATTCATGGTATAAATTCTACATAGCTTATTTTTAATAT GTGCCTTCACGGTTTTTCATCTCAAAGCATCAATGGACATCTGCTTAGGATGAAAGTAAATTTTCACCTT CGCCGCGATCAGCAATTTTTTGTTGGATTTTTTGAGAATTATATGCATTGCATTAAACCTGTTGATATTC ATCTCATGGTTATATTTGTTTTTATAAATAAAATCAAACAACATAAGAGAGGGTTTTAGAAAAATTCTAA CAGAATCCAACAAAAATCGCTGAATACTCATCTAAAACCCTCTCTGTGTTATTAGACTTTATGTATAAAA TAAATATAACCATGAGATGAACATCAACAGGTTTAATGTAATGCATATAAGTTGACATCCTATGAGGAAG TAGCACCACCTTTAATGGAAATACATTTAACAATGCCTTTAAAAAATACACTATTGACTGCCAAATGGCT CAAAATGGTTTGGAAATCACAATACAGATAATGATTCTACAATTAAGGTTTTCACCTGTCATTTGATACC CAAGGAACACTTTTTTTTTTATGGGGGGTGGGGGGGGGGGGGGGTGGGGGCTAAATCTAACTTTTTAACA AGGCAAAATGTTCAATGTTGAAGTGCATTTCAATTGCGATATCTATCCAGGCCAGATGGATATGATAATT TACCAAATATATCAATTAGTAGGCGGTTTCCCTGGCAAAATTTGTATCATCACGTATTAGTCAAAACATA TTGTTTCACATGATGGGTAATAAGAGCTTCCATTTCATTTTTTGAGAGGGGGCGTTTCCAAAACTGGTCT ATACCTTTAAGTCTGTGGACAATTCATGCACTTGTGAAGAAGAAAAAAATCATAATGAGGTCAACAAGCA AAAAGAATGCCAAACTTATTATTTTTAATCAAATTTTAGTTTGATAACTTGTACATTCACCACATCTTTT TCTCCAAAATTGATTTTGTGAGTAAAAAGAATGACAAGAAATATGAATAGACGTATAAACCCTTTAGAAC GGACAATAGGTCATTCAATAAATGAAGGCATGGGGGTAAAATGTTATTTTTTAGAAATGGTTGATAACCA GTCTGATGACCCTGCTGTATTTCATGATTTGGCAATGTCTATACTAATCTACTTTTTACATTTATTGTTG CCAAACACAAGGGAGAGATTTTAGAAATAGCACTCAGAATTTTTAATCCCATATATTTAAAGCACCCTAC TAAACTATGTTTGTGTGTATCAGGTAAGGGGAGCACATATTTAATTTTTATGTTTAGATATGCAAAAATT AACATATACGATAGGTTTCAGAAGTATGCTCATTACGCACTCAAGATAAAATATATCTCACTCACTAAAA AATCTCAAATTCATATGCTAAAACTTGACAGAGTTGTAATTTCTATTGCATTAGACTACCGGTACATTTG GTAAGATTAGAGGATATATCCTCTCCTTAAAATGTTAACTATTACCTGGAAAAATATGAGAAATACAACA TTCAATTTTACTAATGTATTTTGCCTTTTACCCATGTTATGATTTAAATTGAGGGGACCTTCTTTTCTTT TTAACCCCTGTCAAAAGCGTGTTTGTCTGGGTTTATTCAGGTGCACATAGAGATCTGTAATGTAGCGTAA GATGAAATAAACTTGCCTTCTTAATTGTATTTGTGTTTAAAGTAATCATGAATGCTCTGTTCATGCTTTT CATCACCAAATTGTACAAAGTGTAAATGAATGACATATTTAACATAGAGAAATTTTCAAATGATTTACAT ACTTGTATAGAGAAAGACAGATGCATTGTGACGTGAATTGCATTGTCTGAGGATTCCTGTTTTCGCCCTT GTATTAAAACGTATAGATGTATTTGTGGTCTCTGGTCTAATATGGAATAACTAAAATCAACTCAACTTTT TATATGTGTCTTTCAGTTGTACTTTAACAGGGCTTATTCAAAGATGTTTTTAGAGGTAGAGGTCAATGAC ATGTCAGAAGCAGTTAAGCAAGAAGGAAGAGAATGATTTGTAAATATGTTGATTTTTTTCCTTACGTTGC TGTCGGAACTGTTCAGAACTGTTCAGATTTACCCAAATTGATCTGTACATTGTATAATCATGTATTGATT TAACCTAATTTACAGAAGTGTCTTCAAACTTTTTTTATGTATAAATTGAATGATTGTGTGAGATTGAATT ATACATTGTCTACAGAAGTGCTATTATTATGCTTCCAGACTGAACGGTGTAATGAATGTAGGTTCTCTCT GTTTGCAAACTACACTTTACATGTTTCCTTACAGGTGCATCGATATGAAAGGTGGGAAGGGGATGAGGGA CAGATATACAGACAGGAATTTACATATATCAGGTGCTACTTGTGGCCCTTGTATAATGATTTGTTTCTGT TTTTCTTTTCATTTTGAAGGGACCTGTCATGTGTGGTGGTATTCTACCCACTTCTAACTATTTAGTTTAA TCAGGGACATGATAGAGAAGGACTGGAATCAAGCAGGCGAAACTCATGTAATTTATTTAACGCATTCGTG AGTTCTAAAGCGTAACAATGGGATGTGTTACATTCCACTCGGCTTTGAAGTTCCATGCTCAGAACTGCGC TTCCACTGCGGGGACTTTCAGAAGCCAGGCACCAGTTTTACATTTATTACAAAATATATAATTACCGACA AAATTTCAGTGTAAATCAAAAACTTTACATGGGGATTGTATTGGGAATAGTGCATCAACACATTTCCAAA TTTAGAACTCCGTCCTTCCTATAATTTTTGTGCCAGAGTTGGTAAAAGAAAAATTACATCCTGAAAAAAA CTTAATAATTTAGGATAATGCGCTAATTTGTGCTTTTTTTAATGTCCCGTTATTTGATCCATGATTTACA ATCTTCAATAAGTTTGCTAATGCGTGTTTTTGCGTGTTTTTTGTATTTTTGAAGTTACAAAAAAGGATGA AATTACACAAGTTTGTGTTCGCTTCTTCTACTCTTTACACATTCAACAATGGACGAGAAATCATTGAAAG GGACAGCGAACAGTTGCTGTGATACCATTTTCTGATATAGGAATTCTAAATCCTGAAATTCATGTGCTCT TTTATCTCACCACCTTGTCAGCAGTTGCAGATTAGCGCATAACTTTCCGGCGGCTCGGAGCATGGGGTCA AAGGAGAGCGGCTTGATTCTAGTCCTTCTCTATCAAGTCCCTGGTTTAATCATCAACTAGAATGAGAGTT GGTTCTCTACATGTGCCCATAATCAAGAACCTGAAGATGAAAGTAACATTTCCCCTTGTTTTTCTCACTT TTAACTTCTTTTTAGGGCATGTTCTCCAGTTATTGTATCTGTCTGAGAAGATTTATTGTAAATATTTGAA TGGGACAAGTCTAAAGCAAATGACTAGATAATGAAGTTGGATTTGTATATTGCTTTATAGATGTAGATAA GGGTACCTGAGAGTATGAAGAGAAAGAGAGTGAATGAGAGAGATGGATTAATACAAAGATAATATGTACA TGTAGAATAAATTGTCTACTGGCTGTGCACACCAGTTATTGCAGCCCATTGTGATATGGTCAGAGCTTTT GAATCTATCTGCATGTTTTTATTTTGTGTAGTTCTCGAGCAATTACATGCAAACATGTGGCAGTGTTTTT TGTAAACAACAATTGTTTTGTGTGTCCTGCTTTATTTAATATAATTCCTTGTTACAAGAGAATGCAACAT GATAAAGAAGAATGAGAGAATGACAAAAAGGACAGGTGATCTTTAGTTCTGATAAAGACAGGAAAATGAT ATACTACAGAAATGATCAAAATTTACACCGAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds