Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_003726917.3 PREDICTED: Strongylocentrotus purpuratus ras association domain-containing protein 1 (LOC100888845), transcript variant X1, mRNA TAGTCGATGATGAATATTCGAACTTGAATTAGCGAAGCATGGAGGAGAACCAAACAACTGACGCGAAACA CCGACTAAAACGATTCTAGGCCACCAATCTTTATCACCAGAGGAAGTGTGAAGTGTAGTAGCCTAGGCGC ACAGAGGTCGCGGAAATCATGAGTGCCAAGCGGCAGGCAGCCGCAGTTGTGACGGCAGCTCCAGTCGCAA CATCACTGCCAGCTGAAGGACCAGGAACGGTCACTAACGAGTCGGTCAACAGCCAACTCCCCCCAAGTCA ACGGGGCCCTATCGGCAACATAGCCGCATCTTCCTCCAACTTTGTTGTTAGTTCTATCGGGGGAATGTTC AGCAAGATGACAGAGTATTTTGAAATGCAAACAATTTCTGATTCCAGGGGATTTGGGGATAGGTCTACCT CAACGGACGATTTTGATGATGATTTTTACGACTCGTTGGACCATCTTGAGGGCCATCCTGTGTCCAACAA CACAAACGATAACGGCCAGAGAAGAGGAATTTTTGCTGGAATAAGCAGTTACTTTCAACCATCGAAAAAA TACCAAGCAGTGCCAACACATAACAATGATAATAACAACAGAAGAAGAGACTCCTCCAGTGTGGATGGAG ATCTCAGTAATTCATCCTTTTCATCGTTTCAGGACCACATGAACACATCGTTTTGCGAACCATATCCTCT GATTGACGAAAGTGTGAATGGGGAAGGGGTATATGTAGATGACGGAAGGGAAGGAGAAGGCGGAGAAGGA CACAAATTTGTGCCAACACAATTGTTGAATATCATCACGTGGTGTGATAAATGTGGAGAACTTATCTGGG GATTCTATAAACAGTGCCTTCGATGTACATATTGTAAATACACATGTCACTACAAGTGCTTGAATGATGT GGGACTGGACTGTATGGAGTCACCGGAGCTGCGGAAAGACACTCCAGACCACTCGCCGCAGCACACTCTA GTCTCAGTAGAGGACATAGAGAATGAGTTAGAGAGCTTTGTATTCCTGACGAGGGAGGAGTTAGAACCAA AGATTGACAAGTTCAACACGCTGAGGACTCAGAAGAGTGAATCACTCACACTGAATGAGGAAGGGACTCT GTTCAGTGGCCGAGTGACCGTTAACATCAACCTGGCCAGACCGGTTAGTGTGAGGACAGGATGCCCGCTA CCGGACATCTGTGTAAGCACGCTGAAGCAGTATGAGCACAGCATTGATACCAACAAGAGACGAACCACCT TCTTCATGCCAAAGGCTACCTCTCAGGAGCTGAACATTACCTGCTACACCACGGCCCAGGATGTGATCAG GAACGTCCTAGCGGGACTTCAGCTCATAGACAACCCCAGGAAGTTTGCCCTCTTTGAGAGGACAGAGCAC AATGGAGAAGTGTTCATGAGGAAGATGGTGGATGAAGACAGACCTCTCTACATGTGCTTGTCCTGGACTT CAGCCACCGGCAGTAAGAGGTTTGAGCTACGAGAGAACGAGACTGGAGTTATTGAGTGGGAGGCGTTCAC GGTCCCGGAGCTCCAGAACTTTCTGCGGATCCTAGACAAGGAGGAGGAGGAGTACATCCAGGCGGTCCGA CGCAAATACATCAAGTACCAGACTCTCCTACAGGACACTGTAGACTCCACCACCTCCACCACCACCACCC AGCAGCAGAAGCAGAGTGCTCCCATACACCAGAAGCAGATCAGTGCTTGAATGAATGAATGAAACTCATC CAGGCCAGGGAGCTGAAGAGGGATCCAGAAGGAGAACTCTCATCCTGATCCTTATCTTTCTGTAGCATCA AATGGCTTAGTTTATAGAGGCATACTGTAGATCATTCTTGGGGTGGTGATGGGGAGGTTGTATGTACTGG GTAAATAATAGTGCGAGAAAATGGTGCGGAGAAAAGGTGACTGAAAATATACATGGATAAATTCATGTCG AAATCCTTTTCTCATTCCTCAAAAAAAAAAAAAATCATACTAGGATATGGTGTAGGGTTTTAGAGGCTAC AATAAAAAAGGAGAAAAGTGACAAGGACGTAGTGGCACTTTGTGGAATTTGAGATCAGACCTAACAATTG AAATGATCAAAAAGATAGTGATTAGTTAGAAATAACAAAATAAAAAATGACCAATAGAAGCAACATCAGA GTCTTGAAAGAATTCTTGATGTGATGCAGGAATTGTTGGATGGACTTGTTGAATGCCTGCTACATTTACC AATTAAAATAGATTATTAGCAGCTCTAGGTTATGTGATATGGCTCTAGTTAGTTCCTTATCGTACTCTAC ATAGAAAAAACCCTGCTATATATACATTGTAGGTCTCTTCTCTCTCCTTTGTGTGCCACTTGGGGTCATT GGGTAAAAAAGGAAATTAGTTTGTAGTCTTTCCCGATTGGACCACTGGATGTTTATATTTTATCTTATCT TCTTGGAATGTGGAATGATGACAAAAAGCAAGGATTATCCCGAATTCTTTAAGAACTTATGAAATTAAAA AAAGCTTAATTTTGATGGTGTGTTGGATGTAATGCTGAGACCTTCAATACAAAAAAATTGAAACCCAGTT TACTGTAAACAAAAAAGAGAAGTCAAGTCTGCTGGGGTAAACAAATCAAAACTGGATGTATTAGCTCTTA AATGGATTCAGTATTTATTAAATTGTTACTCTTTGTTAAAAAAAACGAGGGACTGTACCTTACATAGGAA AAGAAATATTGAAAACTGAAGAAAAGTTCTTTCAGAATATAGAAGGAAGGATTTTCCTTGCTTTCTGCAT GCAGCTTGACTGCTTACATACTGTCATGAACTCATGATGATGTACATAAAATGTGTTGATAAACAAGATG TGCATATTCTATCACAACATATCGCAGAGACCAAAATAACATATGGTTGTGTGTACATAATGATCATCTT GTGCAGGACACAGATAACATGCCATCAAACTTGAACCAGTTAGCCCAAAGCTATCCTAAACATTCCTCTT CAAGAAACATCCACTTTAGAAGTAAGTCTCTTACTTTCCATCTGGGGAAGAAATAAGAACGGGAAGAATT CACAAAGTTTGTGATTTGAGGATACACCATAGGAATGATATTCTTTTAGATAAAGTTTGCTGTGTTAGAT TGCATTCTTCTGTATCAGTATTGTGTAGAGGTATCTATGATATCGTGCTGAGTTTGCTGCTATTCATACA AAGGCATTGTGGGAGTGCATGAATGACTGCACTCAAAGCTCTGATAACCATCATTATAATCCTCATAACG TCATAGACATAGTCAGGGATTTGTTGCCTGTCACACTGAGGATTTTCATGCCAGACTGGTCACAATATGA ACCCACACATTTATTGAAAGAAAAAAAAAAGAATATTGGGATTTTTATTTTTTAAAAGACCCCCTCTTTT TTAAATCTTTTTTTTTTAATCCTTGAGTGCAAGAAATAACAATATGGCAGTATCAAAAACTCTCACTTTG CCTTCATTGTGATATTAGCAGACCTCTTCTTTCACATTTTAACCAATCTGTAGTTTTTAGCACTCTGTGT ACTTGCTGTGTTTGTGTGAGGAAATCAAAGCCTGTTTGATTTTTATCTGTGTGTGGAAGGCTCTTTAGGG CTCCAATGACATAATATGATTGCAATTGTGTATTGAATCTCTTGATGACTATGTGTGTTTAGGACATATT GTAAGGATTTATTTTTATATTTTGTCAGGAAAGTGCATTAACTATTATTTCTGTAAGGTTTTAGGATATA CTATGTTGTATTTTTTAAGTTATTAGGAATTAAGGTACATTGACTGGAGACCAATGAGGCTTTTGTTGAG CATCAATAGCAGGGTGTCTAAACTTGAGCATAGCTAGCAGGAGAAAAGTGTTTCTTCACAATCTACTGTG ATATTTTACTTCTCTAAATATCAAAATTGTTGAAGATTTGTCCTGTTGGTGCTAAGTAGGATCAAAACTA TTCTTATATAGGACCAAGGCGGTAATATATTCAGGGATCTATTATGTGTTCAGACATTAGAAATATTAAG AGTTTATGTTTCAGGTTGACGTGCTTATACCTTGTATGCCTTTTCTACGAACTGTGTTCTCATTGCTACA GATCTTTAAGACATAGGTATCCATGTCATATAGTGTATGATCGGTGGATAGGCATTGTCTTTGGACTGTG CTCACTATGCCTGTGCAGCAATGGAGCAGTTTATAAGAGTATGGCAGTGGGGATAGCTCTATGTGCTGCA CTCAAATCACATTGTATACGGTTGAAGATGTGTTTTGATCATCTTTTTATGGGAGGAAAAAAAAAATGTA TTAATTATCTTGCCAGATGCATATCTTTGTTGATAATGCAAGGGGTTTATTTCTGAATTATATTTTGTAG TGAGTTAAGTTTATTCAGAAATTATGCTAGGATATTGATGTATTAAAACAGCAATGCAAATGGTTTAACC GTTTCTATTTAAACTTGTCTAAAGCTTTTTTAAACACAGAAACTCACTAAAAAGAAACAACATTTTGGGT TTGGTGAGATTTAGGTCACTTCAAGGAAAACATTTGCAAACCAGATAGTTGGATATGTTACAACAAAAAT AGTAAATATTACATTTCTACCAACTAATATAGGAAATTCCATGCCATTTGCATTGCTGGTTTACATCATC AATTGTTTATTTTTTTTAATTTCTAAATAGTATGGTGCTTTATGATACTTATTCTCCAATCTGCATATAC ATGTAGAGCAATAGGAAATATCTTTTTGACCTTGATTTTGAAGAGACATCTCAATGAATATGTATGCTTG ATCTTTTATTTAATGACAAATTATAGGTGACTATTTTCTCTTCTTGATTTTTATTTATGTATGTTAGGAT ATATAGTAAGGTTAAGTTCCAAATTGTGAGTACATTCCTTTTGTTGCGTAAACCCATTGTATATTTCATT GGGAAATAGACTAATGCCAAACTTAAAACATTACCAATATTGTTTATCCTGTAATAGCCCTTAAGGCATT AACAATCTTATGCATGCAGTCATGATCAGTTTATCCATTTTTCCTTTGACCACAGAATACTTGACAGGAG ACATTGAAATGAAATGAAATAAAAAAGCTAAAATTGCACCCCAAATTCAATTTAGGTTTATGACAGAAAA CAAAATCTGAACAAAATAGCAATTACAACAAAAAGGACAAATAATTTGGTAGATTTGTTTATAATGAATT ATATGTGTACACAAATTAAAAGAAGAAATTGATTTTTTATGCCACCTTAAAATATTACAACTTTTCTGGA TTAATTTAATATTTTTTGTGAGAGCGATCAGTATTTTTTGTGAAAAAAATCAACAATTTTTATTGGCTGA GACAACGCAAAGTTGTACAGCTGGATTAAGAGTTTATTTGATCCATTTACATCAAAAATTATAAAATTTG TTCATGCCTGTATGCTAAGATTGATTAATTTCTATTTATTGGGTGCTTTATAACTCCCAAATGCCATCCA ATACTCTTCTGTCCATGTATATATAAAGGTTTGTATTCAAGTGACTTGAAATGTATAATTTTGGTTTATT TTCAGACATTGAAACCTTGTGTAATCCTTATATAAATTATATATCGAGATCCCCTTATAGATGCATACAT CTCTATCATCTAGCTCCTGTTGCGAGCTCACTATCTTATATGATTTGTTAGGTCTGCTACCCCAAATATC GGTTCAGGTTTCGATTATATTGTATATCATGTTTTAAATCAGTATTAAGGAAGAATAAGTTATTCCAAAG GACTTGTGTATATGAGTATGGGGGGAGGTGGTGTGTAAAATAGGCTGTATATTTTGTAAGTACTAGGATT GATATTATATGCATGAATTTATTATGGTGATCAGGATGAAAACTTTGATGCTTTTTCTTGACGCTCTGAG CCTGAACACATGTCAGTATTGTAAACAAGTTCACCCAGTAAGGTTCATTCACACAAGATGCTGTAGACCG CCTTATAAAGAATGCTGTGGCAAAATAAAAATAATAACTCTTTGTGAAAGATGGCAAATGGACACAGGAA AAAAAAACTTTGAAATATAAGCATACACGTCCATCAGTGTGTGTAAAGATGCAGAAAAATCATATAGGGA CTTTTCATTTTGCTTCAGCATACTTTAAAGCAGTTTAACATGTTAGGTGTGAAAGAGGTTGAAGAGGGTT CACATATTTCTCTGAAGCAGTCGACTGTTTGAAAATGGACTGTTTTTTATTGGAAACTGGTTTATGACAG CAACTAAAAGTATTCTTTCTGTGAAGAATGGCTGATTTTTTTTCTCTGCAGCTGGTATAGATATTTTAAT GTATTTTTGGTCTTTGAAGAGAGGGCACAATACATCTCTCGTCAGATTCCTCATTTTTGGTGCTGCCTTA ATAGTTTGGAGCTAGAAGGACATTAATTCATATACTCCATCACACAGTTAATGCCCTTCTGGGTCTCGAC TTCTAAACACATTATTTTCCGTATTGCATTAGAGCATCAGAGATTTCATTCTGACCGTCACCAGAGTGAT TCATGCAGGCTAAGGTGTGTCAGTGACTCTTATTCGGGAGCTTTCTGTGCCCATGCCTCATGACATCGAT GGTTCGCTTTAAACTCTTCACAAACCAAGCACATTTTGAAGAATCTGATCCATTGGTAGGTTAATCAATT CAATAGAACAATTGAAAATCCAGTTTTTCTTTAATTGGTAACAATTTATAAGAGGGATTACAAAAGATAC ACCCTGTGTATTGTAGCAATGGTAGATTCTGAAATGACATGGCCATTTGACAACACTCATTTATGAGCCA ACCTTTGCTGAAGATGTTTATTGCTGAAATCATATGATGTCATGTTGGTATGAGATACAGAATGATTCTT GTATGTTATAGTTAATCCCTGTTTGGACCGGGACTAACTTGTTAAAAACTTCTATGCATTCTGTATAGGT ACATTGTTATATAAGGACATTTTCTATCGCAATCACAAATACGTGATTACTGTAAGTAAGGTATTATCTT GTAAATAAGGTATATATAAGGAACCAGATCATTACAGGTATTGTACAGGTGTAAGATAAAAGTTGTAAAA TAAGCCAAAAAGGTTCATATTACTGTAAATTTTAAGTATGAATCTGTTGTTCAACTCCTACCAAATTATC TTTATGTGAGCAAGATTTATATGAGTACTTCCAAAGAAAGTAACAAGGATGAAAATATGTTCCAAATGTG CTCTATATCTATCAAGAAATGCATGGCATACTGTATGAAAAGTGCTTGTTTGTAAGTTGTTTGTCTTGAT TTTTATTAATTGGGAGGACTTTTGTGTTCTAAAACAGAATGTTGTATTTTTGTAGAAGAAAGTCTTTTCA AAGAGAGGATATAGAAAGAGGATTGGAATTGAACTGATGCAGAATTTTTGTAATTGCTTGTAAATCAGTT AAGAGAAGTAGACGGAATGGTACCAACAAGTTATAAGCAAACAAGGATGATATTTTTGGGTCTGTCTTCT GCTAAATCAGATACACGACCCATGGTCTAAAATCACATTTCACAAAACAAAAATTTAGACCTCAGTGTGA CTTTCTTTGTTGAGCCCAATTTTGGGCTAATGCCTAAAACCAAGTGTCGGATTAAAATTGGATCTTTGAA ATAAATATCATGTTTTTGTCTCAAGACATGTGGCATTTGGCCCATTCACACACAAGAAAAAAGTGAAATT TTAAGGTTGAATCACAATTCAGGTCCCATGTTATGTGTGCTTGTTTCCATGTTGGATATATGAAATAGAT TTTCAGTATCTCACTTGTAGTGACTCGTTCTAGAGAGTGCACAGCAATAACTTCAGTGCGACTTTATCAT GAACCAAATCTTACGTATGAGTGAGATGTTTAAGCCGCCAGGTCTGTTAGATGCACATGAAAAAAGGGTG AGATTCTGATCACTGTTAAAAGAAAATGATTGTTGGATTTCAAAAATTGCTCTGTGTGTGAATGGCCTAT TGCTACCGATGACAAAGTCTGGTCGGTATTAAGACTTTTTGAGAGCAAAATGTCATTAGATAGAAAGGAA TCTATATTAATGCTCTTTGTAAATGAGAAGTTACAATATGCTGCCAAAGAAATGGCTTTATGTGGAATGA TGCAAGAGAGGATTATTGTCATGAGAAAAGTTTAGTCAGCTCTGATCTGAATTTTTAAACTTGGTTTCTT TGAACTTGGACATTGTATATTTGTATCATTGAGATAATGTGTGCTTGCAAAGATTTACAGATTATGTAAT CTGTAGCAACAAAAAAAGGACTGGTTATAGTTCAAAATATGAGTGCATTTAAAAAGACGCTGAAGGATAT ATTGCAACAAAAATTTGATCAGATAGGATTTATAAGGTAGGAGTTCCATGCAATGTGAGAATAGAAGAAC ATGACAGATTCGATTTGAAGGTAGGGATAATAATTATAGGGCTTTAAGGTATTGAAGGTCTCATGAAGAT GAAATCTAATTCAGTATTGTAAGAATTAGGATGATTTATGAAGGTTTGCAATTGTTGCTTTGTTTGACCC TGTATATGCAGGCACTTTATGTCATTGGTGTGTTTTCCCTCCAAGTCAGGGACAAAAATGAGAGAGCCTT TGTAATGCATGCTTGATGATAGTGATGATGATGACGATGATGATGATGGTGATGATGATGATGATGATGA TGATGATGATGATGATGAAAATATACAATTAAAAAGCATGTCAACAACAACAGATTTCATTGTCTCAGAA TGAGCAATGAAGGTGTTGATTGTTGATTACTAAACAACAAATCTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds