Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030972878.1 PREDICTED: Strongylocentrotus purpuratus metabotropic glutamate receptor 3 (LOC579746), transcript variant X2, mRNA GAGTGACACTAAAGTGGAATCGAGGAAACCCACGAATAGGAAGAATTCAATATTATTTCCTCATCAATCT TCAAGAGCTCAACCACCTTGGCTCAAGCTCTCTATGGGACCCATCACTTTCAAGCGTTCACCAGCCTTTT CCGGCACTAAAATGATTTCTAGCGCCCACACAATGCTCCTAATCTTGACTTTACTGCTGTGTCTCGCTAC GTGTGCAAAGCTAGGTTCAAGCGTGAAGTCCGGTATTACAGCAAAGGTCATTGGAGACCTTATGATTGGA GGATTGTTTCCGATCCACGAGAAGGGTTCACAAAACGTGGGATCACTCGATGACGAGAGGTGTGGACTTA TCAACGAGGATAGAGGGATCCAGCGAGTCGAAGCTATGCTGTTTGCCATAGACAAGATCAACAATGATTC TACGATCCTACCCGGTATCAGATTAGGGGCAAGTCTGAGAGACACCTGTTCAATAGACACATTTGCCTTA GAGCAGTCTCTTGAATTTGTTCGGGTTTCTTTGACAACGTCGAATCCTGCAGATTGTCTAAATAAGAGCA CTATTGTAGCATCAACGTCTGCTGGCAGTGTAGCGGGTGTCATAGGTGGATCCTACTCTACCGTATCTAT GCAAGTGGCCAATTTACTGAGATTGTTTGAGATTCCTCAAATCAGCTACGCGTCTACCAGCGCTCGTCTT TCAGACAAGTCTCGATTTGAGTTTTTCGCGAGGACAGTTCCACCGGACACACTCCAAGCCAAAGCCATTG CAGACATCTTATCACACTTTAACTGGACTTACGTTTCAACTGTATGGTCTTCTGGAGAGTACGGCGAATC TGGAATGGATCAGTTTGAAAAAGAGCGGTTGCATAGGAACATCTGCATTGCAGCTTCTGAAAAAATCCCC TACTCACCCGATGCTATGACTTATGACATAATCATTAGTCGGTTAATCAAGAAAAAGGCAGCCAAGGTTG TCGTTCTATTTACCCGCGATGTGGATGCACGCGACTTGCTGGAAGCTGCACTTCGCGTTAATGCTTCGAA GAAGTTTATATGGGTTGCTAGCGATGGGTGGGGTGTTCAAGACACGCCTGTTAACGGGAGAGAGACTGTT GCAGAAGGAGCGATCACGATCGAGCTCCAAACTAAAAAGATAAAGGGGTTCGATCAATATTTTCGAGGTA TTAACCCAAGGACGAACACGCGGAATCCATGGTTCAAAGATTTCTGGGAGCAGAAGTTCCAGTGCCTATT GGAACCTGGAGATAGTGTAAATACATCGACGCCGTGTGCTGAAAATGTTCTGGATGAAGCAAATCATGCG CAAGAAAAGAAAACACAGTTTGTCGTGGATGCAGTGTTTGCCATGGCACATGCTCTACATACGATGCAAA CTGACATGTGCCCACACACGGAGGAACTCTGTGATAACATGCTGCCAATAGATGGAAGGAAACTTTTTAA GGAATACATTCTTAACACAACATTTGTAGATCTCGCAGATACTGAAGTTAGCTTCGATTCGCAGGGAGAT GGACTGGGACGTTACGACGTCATGAACTATCGACCAATCGAAGGTACTGATGATTATCGGTATGTGAAGG TTGGTGAATGGGCTAATATTCTATCTATGAACCTGTCAGCGGTTCATTTTCACCCGGAACTAGGGGACTA CAATTCCCATAATGTACCATACTCTCAGTGCAGCATGCCATGTGGTCCTGGTCAAGTGAAACTCATCCAG GATGATCAGATATGTTGCTGGATGTGTATCAAGTGTCAGCCTTGGGAGTATCTGCAGAACGAATATACCT GTCGACCCTGTGATATTGGCTACTGGCCGACTCCAGACCTCACAACGTGCTACAAACTAGCCAAGCAGCA CATGGATTGGGTATCCGTGTACACCATCGTTCCGATGTGCTTTTCACTGGCGGGAATCATCGTCACGTGT GGAGTCATTATCATTTTCTTTCAGTACCAGGACACCCCGCTGGTCAAGGCATCCAGCCGCGAGCTGAGCT TCCTTCTCCTTGGTGGGATCCTTATGTGCTACAGCATGACGATTCCCATCGTGACCAAACCATCGGTCAT TGTCTGCTCTATCCAGCGACTAGGTCTTGGGTTGTCCTTCAGCATATGCTACGCGGCCATGCTGACAAAG ACAAGCCGTATCGCACGGATCTTTGACAGCGCCTCAAGGTCGGCCCAACGACCGAAGTACATTAGTCCAT GTTCGCAGCTCGTCATATGCTTAGGACTCATCAGTGTCCAGATCTTCGGGGAGTTAGTCTGGTTAGCAGT TGACCCGCCCTCAACGGTTACCCGTTTCGCGGAAGATAGATCAGAAGCGATTCTTAAATGTGGAATAACA GAGATCAGCTTAGTTTTATCGCTAGTCTACGATATGTTTTTAATAGCAATGTGTACAGTTTATGCTTTCA AGACAAGGAAGATACCTGAAAACTTCAACGAAGCCAAGTTTATTAGTTTTACAATGTACACGACCTGCAT CGTGTGGTTTGCCTTTGTCCCGGTTTACTTCGTTACCAAAGATGACTTCAGACTTCAGACGACGACGCTG TGTGTATCCGTGAGCATATGTGCATCCGTGGCGCTCGCCTGTCTCTTCGCGCCCAAAGTTTACATCATCG TCTTCCAGCCTCACAAGAACGTGCGTAGACTCAGTTCCCATTCGTCTCGACGCTCGCAATACGACGGCAC ACGGTTCCGGGACGAGGTTCCGTCCAAAGACCTCGACCGCATGGCATCAAATTAACACCTCACGCAACAC ATTACGATAGCCAAGACACCGATGGAGAAACCAGTCAAGCCTATCTGTGACGTAATATGACTTCACCTAC CCATAATGCAATATATTATAAAACACGTGTCCAATCGAAGTCCTACAGCGACAGATTTAATCGACTCGGA TACCCAAAGAAGAGGAAATTTTATAACAGCGCCAAGATGAAACTAAATTTGATTCTATCGTTACACGATG ACATCTAGAATGTTGATGTTGATTCCGAGGAGTGTCATCGTTTCGCTATGTAAAGTGATTAAGGTAAACA TTGCATTGCAGGCAAACATTGGACTAACTTCATTAATGGCATATTCGGTGACACTATGTATCGGACTTAA CACCTAAGTTGAATAGAGCGAGTGAAATATGGTTTTATGCTGGTTGGTTGAGCAGAGGACAGCTAACGTG TCATCTTTATGATCATCAAACATAACCACTGCAGTTGTCCAACACGTGATATCTCACCCTTCATACAGAG TATTGCATATCATGTGGTTTCGTCAATCACTCAAGGGTTTCGCGATGGTATCACGACAATGCCCCCTCTC TAACCTCGCACCACGCGAGCTGTGAATATGGACTTACAACAACGTCAATAAACTGAAGTACGTTGTCTTT TCACGGAAGAAAAAAGTTTATCCTAGAGGGTTGTTTATCATCATAAACTACTTTGGACCGTTATTTTACT TGATGCTATGAAAACGACATCGATGGCCATCATTCGTCACCCTCACGAAAGGTCAAACCACTGTGTCACC ACGAAATATCACCTGGTTCATGGACGGACAATCACGTGATAAGGAGAGGGCGCGAACCGAGACCACGTGA ACACCCTGTAAAAGTGCGCCATTTTAACGCCATCAATCACTCTGCCCGTCATGTCATGATCAATCTAACC CATCGGTGACCCGGCACCAAAGGTGTGACAGAAATCAAAGGCTCATCGTGTATGGTCGTCTTCTGAAGCA TCGTGGAAAATCTAACACTGGTGAGGTACGAGATGGAGATAGAATTGTACATCTTGGGAAAGTGTCGTCA TGCCAATGGCATTTTGTGCTAGATTGTATAGGTTTTGATGCTAGCCGCTACATGAGAAAACAATAAAGTA TGTACTCAATCAAATCTTGTTTGTGAAAGAGACTGCACATGAAAACTCCCAAAACGCACATCAGGTTTTG GACTTCTAGATGAATGCAGCCAAGCACAATGATCAAATCTCTCTTCAAAATGTGATTGTGGATGCGATTT GTTAGGATTTGATTAGCGGCAAATAGCAAACTCGATCCAAATCTATCGAACCGCATGTGCATGTGATGGG CCTGAAGCTATATTAGTTGATGCAATTGTGAGGATTTGATGACAATCATCTTGGGGAACAGACCAAGTTT TTATTTCCGACAATGATCGCCTGTCACCCCCGCAGCGTCAAAAATGTGACGTCGACGCGATGTGCTCGCC GTTGAATCATTTAATTTTTTCTTTTACCAACTGCTACCCCATTGGGAAATCAATCTTGGATATCTGCAGA AAAATAACCGCATCATGGATACTGACGGAAAGCTGAATTGAATGTGCAGTGAGGATTTGTGCGTAAACAT ATTTTGATGGGTTGTGCGGGAGCGCAGGGAGTCTGGTAGGGTATCACTTGCTTCTTCTGGAGGGTGATTA TTTTATACCATGTTATGGATCTGATATGTGACAAGTCTTTGGGAAGAGGAAAACAAGTATCCAATTGGAT GTCATCCCTTTTGCGGAAGGCATCTTTCTCAGTGCAGCTGTGGTCCTTTGAAACGCAAAGTAACGATCCA CCTGTGAGCGGAAATCAATAGATCTACGGTAGATGTGTAGTTATGCTGCTGAACAGGAATATTCTATTCA GGATACGAAGCTTGCGGTGGGAGCATCGTGTTCTCCTTTTTAGAGCTCTATCAGTTGAGTCTAACGACCA CAAAGAGCAAAATAGACGAATGATAATGAATATCTCCAATATACTTTCAGGTGGTGACTCAATAGGCTGA ACATTGCAGTAAACTAAATTCATAATGGCATTCTTAAAACTGACACATTTTTTCTAACGATAAACACGAA GAAAAATAAGAATGAGTCCAATTGTACAAGAGAACTAATATTATTTTGCTCGAAACTCGAATATAAACAA TTTTAAGCATAATTTAGTATCAAATAATAGTATTAAACAGGTACTTAATATGTCAATTTCGACTTTAAAG CAAGTCAAAAACTAAATCACAGTGTTATTATTATTATTATTATCGCACAGATTGTTTACTACATAACATA CTACTCTCCCCCTGTTTGTTATCATCTACGACCTGGGAGGTGTTTCACAAAGACTAAGACGAACTTTAAG TTGGACTTAACTATGACAGGCTGTTCATTCCACTGCTTCCTCTCACTATTTACTGGCATTGGTCTCACAT CTACAGAATTGAGCTTTTTTGATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds