Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030999856.1 PREDICTED: Strongylocentrotus purpuratus alpha-2 collagen (COLP2alpha), transcript variant X3, mRNA AGCCAAGAGCAAGCTTGCCGAGAGAAAAGTTTATCAGCAGCACTCTTCAAACTTGCTGTAGACCCGATTG CTCGCTCACTGGTCCGCCACAGAGATTGTACACCATGTATAGCTTTGTGGACCAGATTCGCCAGCATAGG CAGACACTGTTATTAATATTAGCGACAATAACAGTTTTCGCTGTAGTATGTCAGGGACAAGAATCATCGT TTTCACTTAGCATAAGCTCGGGAGAGCCCCTACTACCATGTGTATACCGAGGACAACCGTATCTCCACGC AGAATCGTGGAGTGTTGATGAATGTACGATTTGTAGTTGTGACAATGCCACCACGACCTGTGTGATTGAG AGTTGCCAGCCCGCCTTCTGTGTTGAACCCATCAAACCGGAAGGAGAATGTTGCTTCTTGTGTCCTTTCA ATGTGAAGGTGAAGAAGGTAGCGCCGGTGATCACCAGTACAGGCAGTATCTCAGAAGGCCGAGAGAACCG ACTGACTCTCAGGGTACCCATCAAGTTTCAGGAAGCTCAGGATACAACGGGTGTCGCGGGAGAAGGTCTC TGGAGACTCAGTGCCTGGGCCTCGCCCAATATGGATGGCAGGGGACAAAGATTCGGCTATCAAAGTCAGA CCCTTACCGAGGCCCAGCAGGCAAAGCACTACAAAAAGAAGGACTCCTTTAATTTCCAGGACGTGGACTT CAGACTCACAGACCCAATGGCCCAGTGTACTGACATGATGTACATCTGTACTCGATTGGACCGTGGCGAG AGCCCCAGGACCAAGGGAGGTCTGGACTACGAGTTCTCTGGCTTTCCTGATGATAATGCACTCACTGGAT GTACAACCGCTCCAGAATGCAAAGGAGTATTTGCCGAGGATCTTGAATGGACTCTGGAGCCTGTTGAGCC CGTCTTCCCTGGAGAAGAGAGCTCCGTCAGCCTTGACAGCACCGTTACCTTCCGTGATGGCAACCGCGAG CTGGTCGGCAGCGGCCTCTGGCGCCAGGGCCTCTTTGGCAGCAGGAACAGGGATGGTAGCGGAGAGCGCT TCAACTACAAGCGCCAGACCCTTGACAGGCCCCAGGCCAGTACCACCCTGATTGCCGATAGCCCCCTTGA AGTCCAGGATGCTATCACTGACTTTGAGATTGGAACCGTGGGATGCAATGACTTTAACTACCTTTGTCTG GAATTTACCGGAGGGGACAACCCCAACCCTGATTACTTCTTCCGAGTGATTGATGCCATGGACAACAGCG CCGAGGCTAACACACTCGTCAAGTGTAAAGAGCAGGAGTGTCTCTCTAAGGCCATATTCACCGACTTAGA GGCTGATCTTGGTAACCAGATTATCTATGAAAACAAGAGGAACCCACTGAGTGTTGACCTGACCGGCGTC ACCCATGACGATGCTACCAATGTCCGAGGAGACCAGCTATGGAAGATGGCCGTCTATGGCAGCCGCAGAG CTGATGGCTCCGGACCCAAGGCTGGACTCGAAGAGCAGATCCTGGATCCCACTGAAGCATCCACTACCCT GTTGGACGAGGAGAACCTCATGATGAACAACGTTAACTTTGAATTTGATATGACGGGCATTCGCTGCGAG GATGCTGAATGGGTCTGCTTTGATCTGGATAAGAACAACAGGGCTAGCGTGAACTACATCTTTGAGGCTC GCCCTGATGAATCAGTGATCACCGAGTGCATTGACATGAGGGATCGTTGCAAGGGTGTCACCGCTATTGA CATTGATTGGGAAGCTGACGTTGGTGATGCTCCATTCGGTCAACCATCTCCTCTTACCCTCACTGCCGAC ATCAACTTCGACCCACTGAGTCCCGATGTCAATGGACAAGGCTTGTGGCAGCTTGGTGTGTTCGCTGCTA CCAGACCCGACGGTGATGGTCCTCGCAGGGACGAAATCTCCCAGACCCTGGACCCCTTCAATGGGGCCAA ACCGCTCGAGGAAGGTGGACCTCTAGAATTTGACAACGTCTTGACCAACTTCCCAATTGACGAACTCGGC TGTGACGACTACCGTTACCTCTGTGTGGAATTCAAGCAGGGTGTGGCCCCTACCCCTGGATACAAATTCG AGACCCAAGCAGGAACCGATTCCATCATTTCTTGCCGGGAGCAACCCTGTAGAGGTGTTGAGGTTTCCGA ACTACATTCCCAACCTACTGAGACACTCTCTGACCTGATACTGTATGAAGGAAAGGATACTAATCCTATC CAGTACAACTCAGTTGCAACCACAACCCCTGATTCTGGTACCGTACGTGGTGTGGATCTCTGGACCCTCA GCCAGTGGGGTAGCGAGCGCGCCAACGGCAACGGACCCCAACAAAACTACCAGGAGGAGGTTCTCTCCGG CTATCATGCTGCCCTCCCTGTTATGGCTGCTGGTGATACTCTAGACTTTGTGCCCCTCGCCACCAACTTT GATATGACAGGCCTCCGCTGTCCTCAGGTCAAATACATCTGTAATGAGCTCAGCAAGGACCCAAGATCCA GACCTGATTTTGAATTTACTGCTGTCCCTGATGAAACTGTACTCAGGAGTTGCTTTGAGGTACCCGATGG AGCTTGCAAAGGTGTTGTTTTCACCGACTTGGATTGGGATATGAGCCACGGACCAGTATCTGCTGATGGC CCAGATGATGTGCGCTTCAACGTTGATGTGAGCACTCTGCCCGAGAGTGGTGGAGCCGATGGTGATGGCT TGTGGCGTATTGGTGTCTTTGGAGCCCAGAACCCACAGGGAACCGGACCCCGTCTTGATTACAAGCGCCA GATCCTGACCCGTGGCCAATCCTCTACCCCAGCTGAAGGTGAAGGCATGCCCCTTGAGCTGAACGCTCTG GAGACCGAGTTCGACCTGTCCCAGATTGGCTGTGATTCCGAGTACCGCTGGCTGTGTCTGGAGTTCGCCA AGGGTCTACGTGCTAGCCCTGACTTCGAGTTTGAGATCAATGGTGGTGGAGATGTTATCATCAGCTGCAA GGAGCAGCCTTGCCGAAGACCGGTAATGATCAATGATGTTGAGACCAATCCTCTTGGCAACGTTCGTGTG AACGAGGGCACCCGCAACAACCGCATCTTGTACGAAATGACAGCCTTAACCGACCCATCCAGTGGAAAGG CCCAGGGAAAGAACCTGTGGGAGATGTCTACTTTTGGAAGCAGCTTCCCAGATGGCCGTGGTAGGCGATT CAACCCCCAGACTGCATACACCTTCACCCAGTACCAGAAGGACAAATCTGCCTTCCCTGGTGAGAACATC CGCTATGGAGCTGTGGACACCAACATGGATATGACAGGCTTGACTTGCAACGATGTCAGGTACTTCTGTT CTGAGCTCCGCAAGGGAGATTATCCTAGCCCAGATTTTGAAATGATCGCCAACCCCACAGAAGATGTATT GACTGATTGCTTTGAGCTGAACTGTGAAGGAGTTTTGATCGACAACACCAGGCTATCTCTGAACTCTGAC TCTGAGCTGTCCGATGGACCCAACGACCTGTCCTTCGACTTCACCGTCAACTCCAACCCCACTGGAGGAG ATGCAGCCGGTAACAACCTCTGGCGTCTTGAGACTTTCACTTCCAACAACAATGACGGCTCTGGCAGGCG CGACATCCTGCGTACCCAGACTCTGGACCCTGCCGATGCCAGCTACGATCTTGATGCCGGAAACACGATG GTCTTCCGTAACCTAGAGGCCCTTGTTGACTCTGCTGATGTCAACTGCGAAGAAGACTACTATCTCTGTG CTGAGCTCTCAAAGCATGTTGCCGCTTCCTCGGGTTTCTCAATGAGAGCCACCAGAGAGAATGCTCTTAC TAGTTGTAGACTTATTCGTTGTGCCAAGGCTGCTCCACCTCCAGTGCAAGGTCGACCAGGACCTAAGGGA GCCAAGGGAGAACCATTTGACATCCCACCCGGTATGGTTGGACCCCCTGGAAGACCTGGATTGGCTGGAT CAGTTGGATACCATGGACGCCGTGGACCTAATGGACTCAGTGGACCTGCTGGACAAAGGGGAGAAGATGG ACGTGATGGTAACTCTGGTAACCGTGGAACCCCTGGACCCCCTGGACCTCCTGGCCCTCCTGGTGAGATG ACTGCTGCTGCCCAGCAGTCTAAGGGACCTGCTTACACTGCACCCATCTACAATACCGCACCTGGCCGTC CTGGATCCGCTGGATACAGTGGACACCGTGGAGCACGTGGACCACAAGGATTGACCGGACCAATGGGACC CCAAGGATCCGCAGGACCTATGGGAATGTCTGGACCCCGTGGAGCACGTGGTGAAGATGGAGAGGATGGC AATGATGGACAAAATGGAAGGCAAGGAGAAATTGGACTTGTAGGAATCAGTGGCCGACCTGGTCTAGGTG GAATGCACGGAATGTCAGGCAACCCAGGACACAAAGGATGGGGTGGCCGTCATGGAGCTCCCGGAGCAGC TGGAGAGAGGGGAGAAGCTGGAGAAGGTGGTAACATGGGCGCAAGCGGACCCGTCGGAGCAGTAGGAAAT CCTGGACAACGTGGACCAAGTGGATCTCGTGGAGGTGCTGGATCTAAGGGACCTATGGGAGATTCCGGAG AGCGTGGATCTAATGGAGAACAAGGACCAACCGGAAACATGGGACCTCTTGGACCATCTGGACTACCCGG AGCGAATGGAGCAACGGGAGACTCAGGTATGCAAGGAGGACAGGGATCATCTGGACCAGTCGGTCTTGTA GGAGAGTCTGGTTCTCGTGGCAAATCTGGTTCTGCTGGTGCCCCTGGTATCCCCGGATCCAGTGGAGACA GTGGAATTATTGGAGAAATGGGAATTCAAGGAGAGGTTGGAGGACCAGGCAGGAATGGAGCCCCTGGACT TCAGGGATCTATTGGACCCGTTGGTATTGGTGGAGAAAGGGGAGATGCCGGTCTCCCAGGATACATGGGA TTGACTGGAAGCCGTGGACCTGCAGGACCATCGGGAGCCCGTGGAATTGGTGGAGAACCTGGACCAGCTG GCAACAGTGGATCAGAGGGAGAAACTGGATCGACTGGACCTTCCGGACCTCGTGGACCAATGGGAGAACT CGGAATGGGTGGTGGACCTGGAATGCTTGGAGCCCCTGGAAACAGTGGATTCATGGGTGATCAGGGCGAG TCTGGTGAACAGGGAAGCCCTGGTGAGCCTGGATCGAGGGGAACTAATGGCGAGCCTGGTACCCCTGGAC AGACTGGACCCAACGGCGCACCTGGTGAAGACGGTCTTGCTGGAAACGATGGAAAGACTGGCGCAACCGG TACCCCAGGTAGGAGTGGACCTCCTGGAGCCAATGGTGACCGAGGAGGCATGGGACCCCCAGGAGCACAA GGACCCCCAGGCATTGGTGGAGAAACTGGATTCAATGGCAACACTGGAATTCAAGGAACCCCTGGAACCC GTGGAGAGGCTGGTGTTGATGGAGAGCCCGGTGCAGCTGGTCAATCTGGTCTTCCTGGATCTCCTGGTAA CCGTGGAGATTCTGGTACCCAAGGACCCGTTGGTATTGGTGGATCTCAGGGAGCCCCTGGTCAACCTGGA TTGACTGGAACCCGTGGAGCCCGAGGAAACAATGGACCTAGTGGACCCCGTGGAGGACTCGGTGTCTCCG GAGACGCTGGCGAACAAGGTCTGCGTGGAGCTGCTGGACTCCAGGGAGCCTCAGGTATTGTTGGAGAACG TGGAACCGAGGGACGTTCAGGACGAAATGGAGAAGTTGGACCTACTGGAATTGGCGGAAGCATGGGACAA CCTGGTCTTCGTGGATTACCTGGACCACCTGGTCTTCGTGGTGGTGTTGGAGGTCTTGGTGAGATGGGTA CACAGGGTGACCGTGGACCATCTGGACCCTCTGGACCCTCTGGAAGGACTGGTGAAGCTGGTGGCTTGGG ACCTTTGGGACCTATGGGTGTGACCGGACAACGAGGAGACAATGGCAACCCCGGAGACCCAGGACCAAAC GGACCCTCAGGACTAAAGGGAACACGCGGAGCTGGCGGAGAGAAGGGATCAATGGGATCTCGTGGAATCC CCGGAAACCCTGGACCTGGTGGCGCCCCTGGTGAACGTGGACCTAGTGGCTTGAACGGAGAGAAGGGAGA AGCTGGACCTTTTGGTAGCCAGGGTAGACCTGGTAGGAGCGGACCTCAGGGTAACATGGGCGCCCGTGGA GAACGTGGTGAAACTGGCAACCAAGGAGCACTTGGACCTAGTGGATCATCTGGAATGAATGGACCTCCAG GAGTCGTTGGAGAACCAGGACCTACTGGACCCGTTGGACCAACTGGCCGCTCTGGTGAAGATGGACGTAT GGGAAGCCGTGGACCTCAAGGAAACCAAGGAGTACGTGGACCCCCAGGAGTCCAGGGATTGATGGGATCT CAGGGAAGCAGCGGAGAAGATGGACGTGATGGACATGTGGGACCTCCTGGACCTATGGGAGCCATGGGAC AGGCTGGAAATCTAGGAAACTTGGGATCTCATGGATTCATGGGTCCACCTGGACCTGCCGGACCCCAAGG AAGACCTGGAGTCAGTGGCGAAGCTGGACGTGATGGAGCCAATGGAGAGCGTGGAGAAGGTGGACGCATG GGACCATCCGGACCTGTGGGAGTCCGTGGAATGCCAGGAAGTGATGGCCGTGATGGTAAGGATGGACCAG CTGGACCCGTTGGACTTGTTGGTGGTCGTGGAGACACCGGAGCCAAGGGAAACAACGGAATGAACGGACT TATGGGACCACGTGGACCTTCTGGAATCATGGGAGCACAGGGAGAACGTGGAAACCGTGGCAAGCAAGGA GCACAAGGATCTGTCGGCAACGTTGGAGAATCTGGTGGCACTGGACCCATGGGATCTATGGGACCTGCTG GAGCCCGTGGTGAAGTTGGTAGCCAAGGAGCCACCGGACACAAAGGACAGAATGGTATGCCCGGTATGCC TGGTATGATGGGAGTTGCTGGTGAGCCAGGAAACAATGGAGAAGGTGGACCACAGGGTATCCGAGGTATC CCCGGAGTTGTTGGAGAGGGTGGAAAGTCTGGACGAGGAGGACCTCGTGGACCCCCTGGACTTCGTGGAG GCAATGGAGGACGTGGAGAGCGTGGAAACCTTGGACCTTCAGGACCCCCAGGCCCAGCTGGACCCCCAGG ACCACCCGGTGAAGTCTCAATGGCCGCTATGCCACGTATGCCACAACAACAACAATCTAAGGGACCTTCT CAGTATTCTCACTACTACCGTGACGAGATCCCCAAGACCGTGGAGCAGCTCGACAGGACCCAATTCCAGA TTTACCTTGCCAAATTCGAGAGCGAAATCCTCTCCCTCATTGAACCTCTGGGAAGCCGTGACCAGCCCAT CCGTAGCTGCAAGGACCTCTTCAAGTGCTACCCAGAAGCTGAAGATGGTAACTACTGGATCGACTCCAAC GAAGGATCCGTCAAGGATGCTTTCCTGGCTCACTGTGTCAAGCGTGGAGAGAGTGGCAGCCCAGAGACTT GCATCACACCACGAGTGGACGAGATCTCTCGTGCAAGATGGTATGAAGGTGCATCTGGATCAAGATATAT CACCGAAATGGGTCTAGAAAAGTTCTCATATGAGGCCAGTGAAGTACAACTTACCTTCCTGCGTCTGCTG TCCACCAAGGCTCACCAGAACGTGACCTACCACTGTAAGAACTCTGTGGCTGTACGCGACAGGCAGACTG GATCAACAGAGCAGGCTCTGAGACTCATGACAACATCAGATGTAGAGTTATCACTTGATGCACCAAGCCA GGAGCAATACGAAGTTATTGAAGACGGATGTCAAGAGCGTTCAGCAGAATGGAGCCAGACTGTTATAAAC TATTCCACCAGGAGAAATACCCGTCTCCCAATTGTTGATGTTGCTCCTTCAGATATTGGAGGAGAAGGTC AAGAATTCGGTATCACTCTGGGACCAGTCTGTTTCTCATAGAGTCTGACCCCTTTCTAAACTATCTTGAA CTGTCTTTGAAATTACAGCAGCAAAAAGAAGAAAAAAAAATGATAAAATGTTAGGACTATTTATGATGTC CTCTGGCAGCCTCATAAAATTGGAGCAACCCTTTTCTCGTCTGGTGTGTGTTTTTGATCTTTGAATACTG AAATTCTTGCCATAGTGTTTGCGAAGCAATAATGAATTATTTGTAGGGAAGTCTCTAAATTTGTGGCTTG AAAATTTATCAAAAGAATTAAAAAAGAAAAGGACAAATTTGAAGACTCCAGTGACACGAATTTTTCTGAA GGCTGACCAGAAAGTGAAAAACTTATTTGAATACATGATGTTGTACCTCACCAATCTATTCAATGATATG AAAAATGTGCCTTATAAGATTTGAATGACAAGTCAAAATATGATCAAAAGATAACCTATTTTTTATACTC ATCGTATACTCCTTTATATTCTTCAAAATTGTGGTGTAATGTTAGTGCTTTTCCATCTTATGCATGTCCT TGTTTCCTTGATGTTGGTGTGGGTGTACATGGTGCACTTTCACGCCTCTTTCTTTATTCTTTTATTGATT GACTTGCTTTGAAATGGTGCTAGCTCTCTAGTCTGTCAGATAAAAGTGGACTCCCTTTGCGCTGATTCCC TTGCGCTGACTCGTCTAGAAGCCTTTCTTAGTAGAAATAGATATTAATGTCTCCTATTGTGTCTTGGACC TTCTTGACGAAGGTTCTTTGTATTGTCTTTCGTATGTGTTTACTGATAGTTTTTCACCTTGTGAAAATTT ATTGTACAAAATTTTAAAAAAATTGTCATCAAATTGATTAGAATAATGGACAGTGAAGGAAATAGCCATA GAATTACAAGCAAAGCTTTCCAATATTTCTACCTTTTAGAAAAAAAAATCAGGAATTTCTCATCTCTTTT CACAACGTTTTAATGAAATGTTCAACTATGCAAATTCAAAGATATTATATTTTGTCATGTTAAAGAATTA TTTTTCTAATGCTACATTTTATACTGTTGAATAGATTGGTTGATACAATGTGTTGTGTGAGATTATTGAT TAATAAATGAGCTTCCCTATGAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds