Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT116552.1 TSA: Strongylocentrotus purpuratus WHL22.248805.0 mRNA sequence TTATCTCAAGAAAAAATCTGATTGCCTCTGGATTTTCATGTTGTTTCTACAAATTCTGCTGTGAACGAAG ACAGATTATAAATATTTTATATAATAATATTACTCTCCTAATTGTATTTGATATAACAGAGATGCCTCCT GATACAAAAGCGCGTCAAATAGCCTTGATGGGCTTCCGATCGGTCGGAAAATCTTCCCTGACAATCCAGT TTGTAGAAAACCAGTTTGTTGATTCCTACGACCCTACAATTGAAAATACATTTGACAAGCCTTTTAAGAT AAATGGTCAGCAATACCAGTTAAAAATCATTGATACAGCAGGCCAGGATGAGTACTCCATCTTCCCACAG TCCCTATCTGTCAACATCCATGGTTACGTCCTTGTCTATGCCGTCACTTCTGCTAAAAGCTTCGAAGTAG TCCAGATTATTTATGAAAAGCTTCTCGACATGACAGGAAAAGTAGATATTCCCCTTGTTCTTGTTGGAAA TAAAACAGATCTTCATATGGAAAGAAGTATAAGTACACAACAAGGCAAGCAGCTGGCTGATTCATGGGGT GCCACATTTATAGAATCATCAGCAAAGCAGAACGAGAGTGTGGAGGATATATTCAAAACGGTGCTGCAAC TCATCGACGGGAATCCTCAATTGAAAGATGAAAAATGTGTCATCATTTAAAGCCATAAGGACAGAAAACT TTACTCCTTTTGCTACATCTGACACCAACTTTCTCTTCCTTCCCTTGAACCAGAAAAACACAAACACAAA CAAACCATCATCCTGATTATGTGCAGAACTATGTAGCTGAAGATGTAGAAAGGCAGTAGGCTCCTTTCTC TTCTTCTGGATAGTCATTTTATACTGTTTGCAGGAGTTACTGTGGTGCAAGTCATCCCTTTTTCTCTATC CTCCAAGGTTCAAGCTTGAGAATGGAGCAGAACATAAAAAAGAAGCAGCAGCATCAAACTTTACCCATCT CAAAAGAATATATTTCAAAGTTTTTATTTTATTTTGTTCTTCATGACCACCACAAGAAATGGCATTGTGA AACCCTAGTCACATCAATGAGACCGATACTAGACCAGCAACAGACCGAAGAAACTGTGACAGTAGCCCTA ATTGATTTGAAGTTGATTTGGAGTCGGTCTAGCAATGTGATTGAGGTATTATATACCAATAGATTTCAAG GTGTTTACAGCAATCATGATAACTATTTGGTATTTTTGGTTGTTGGTTCCACCATTGTTTTATGCTTGTT TTGATATGAACAGTAAAAGTAATGGAATGTTTTGATATATTAATACTTCCACTACATGCATTTGAACGTG GACACAGAAAATGAAGATTTGGTGACTTATCCCCAACATCTTGTGATCACTTTGAGCTGTTATTGTCCTG TGTAATTCATCCTTAAGAGGGGCATATGAATTAATCTTCCAGTACAGTCTATGCCCAAATCGACCAGAGA ATGATTATACATGTACATTTTGTCACATCATAATTTTCTTAACCTTAAAAGGTTGGGTCACAATTTATGA AAGGAAGTGTCAAAGGGTGTTTATTTAAAGGAAATAGCTGAAATTCATAGATTTGTATTGGATAAATGTA AACATTGTAAAACCATGACACAGCATTATGTACAAGTGATTAGTATTGCAAAATGACTGCGGGGGATATA CTGTAGAAATAGACTCCTTCCAATGTCTGCAGGTTTCTAAATTCTAATGTTATGCATATATACTTTTCAT GAAATAATCTCTTGAGAGTGAGGAGGGAGTTAACTAGTAGGATACCAGTTAATGTCATTCTGGCTCTCAA CAGATGATTAACGGCTTATTGGGCTGCTTGCTTGCTTTTTTCTGTAATTAATCTCAAGATTTGTTCGCTC ATGGACTGCTGAATTCCCTCACGTCCTTAGGCTTATGCAGGAATCTCTTGGTTCCTGTAGGCTAATCCTG TGCTTAATTATAAGGATCTATCTTTGTAAAAGTCAGCTTCATTTTTACAAACATTGACATATATTTAACA AAAATTAAATGGTCTGATCTGATCTCTAAGCAATACCATGACATAATTATGCATTTATAGTATTTTATCC TAAAATATTTTCTAGACTGACCGACAGTTTCTACTTTCTAATTGACCCAAGAGTCTATATAGAAGTCAGT GATGTGTAAATTACATAGACTTGGTCCTCATTGTTTACTTCAATGATTAAGGAAGATGAAGCATTTAATA CATGTAGACAACTGTTGAAATGACTTCATTGCCACTATACCAAGGGTATGAATCATTGATAAGTATGGAG CTTTTATGGATATGTATATAGTGAAAGTGAAAATCCTTTTGGAAAAAGGGTAATTCTTGTTTGGACAACC GGTTGTGCATCAAGTCTATAAACATTACTTGAATTACAGAGGTTTTAATGGCTGCCAATAAAGAAATCTT ATATGACACAATTTTAAAGTAATATTATTTCACTTTTGCTGGCTACTTGTAGGGAATTTCCATCACTTAA AAAAAAAAGTTGAGGCAAATGATGGAAATTAATAGTAAATAATGTTCTATCAGAGATTGTTCTATATTTT ATAATTAAATGAAATGTAAGCTTTTTGTGGTGTGGGGCTGTTTTTCAGTCAATGTACCAAGTCCAAGGTC CAATGGTACAAGTGAATTATATAATTAGCAATGATTTGCATTATATTTTTGTCAGTAAAAGTGAAAGAAT TGAAATACCATTTAAGGCAGTGAGATAATATTCAATTTCAAATGTTTTCACTTGAATGATGTAATATATC TGGCTAGAGATGGACAAGGATGATTCATTACACTGTTACATAATAGCAGCAATAAATAAAGTTGATGAGG CTTCATACCACCTCTTTATTGCATTGTTAATGTTAAACATATTAATTCTGGTATGTTGAAATAGAAACAA GTTTTAAACTCTGGACGCTCACACCATTCCATCAGAAATGTTTAACTCATCAAAATCGTTGATGCCTTTC ATTGTTTTCTCTCTCTTTCTTTTTTTCTCTGTCTCTCTCAAATATTAGTTCATTGAAGAGATATTCCTTG TAAAGATTGAAACATTTTCGTCTTCTGTGCCTACTTTGCTGTGACATTAGTTAATCAAAGCTATGTTTGA TCACAAATCATGAATGTTTATTTACAAAACTGAACTTATTTCTCTCATTGTTGATTGATTTGATTTGAAT GTCACTGCACAATGTATATACATGTAGATGTATATTTTTGAGTTAAGTGTTTAAAGTACATGTACCTACC TGTAGATTTTGAGGCGTTATGATTTTATACCTGCCGAGAACAGGTATTTTGCCATATGATTAAAGTCATC TTGATTTCACCTATAAACAAACAATTTACAACTGAATTATTCATACCCGTACCAAGTTTTGTAATTTTTT AATTACATGTATGTGAACAAATTGATTTGTCCCTATGTATGTTTCTTGAGAATGTGGCATATTAAAACTT GCATCTAAAAGTATTCAACAAAGGCCATTTAACAAGTCCATCTTTCACTATTGAGTTACAAAAAATACAA AATCATCAAATTGACAAGGGGTATGAATAATTCAGTTGCTAACTGTACTATATGGTGCTGTGGTTAAGAG ATATGTTTATACAAATAAACGTTAAACTTTAATTAGACTTTGTACAACTGTATCTGTAGTATTTTCGGTA ATAATGATAGTTCGGTAATGATAAATGCCAGTACAAGGTTTTACTTGTTCCTTTTCAGCTGACTCAGACA AGGGAAATTCCCTTGCAAATCCAAGTCCCATTGACAAATAAATAGCAACAGGGAAGTAATGTATGTAAAT GCTTACAAAGGAGCAGTGTTTGTATGTGCATATATATTCAGTAAAAGATTTAAGGAGATCTATTTATATT CAACACAGATCATATGCGTATTAAGTATGGGTTAGAGCTCTATGAAACAGGATGAACATAAATCTGACAT AATACAATAGCCGAGTGCAAATGATCTCTAAGCTGCATATAAGATGGGACAGTGTGTTGAGTACGTCATG GTTATACAACTTCACAGTACAAGGGATCCATCACTAAGAATTGATAATTACTAAGATTACAGTTCATTGA ACTATTATTAGTATTATTACTGTGCTTGACGATGATATGTTAATTAGTATTTTCTACATTACACCAGTAG AACAAAGCAGTAATTTATCAATGTGATGATTAGCTCAATGTGTGTACATGCACTGGAAGCAATACACATG ACAAGTGCAAGCATGCCTGGCAAGCACTGCTTTGTAAAGTATCGTAATAATCATGATGGTAATCTGTTCA GAGCTAAAAGGATGTAAGTCCTTGTAAACGAGTCAACACCCTTCATGCTCTCAGCAGATGAAAGATAAGC CGTGGTATTGTTATTATTTATAGATGGATGTTCAAGACCACATGCATTGAAAGTTCCCCTGAAACTATCC GGTTGTAAAGATGGTCTCATAAATTTGTTTGAAATATGATACAGTTTTCATACGGTTCTGTAGCCCCTCA GATAATTTCCATTGATATTAATTTGCTCTCACTAATAAGGGTTATTTATCTTAAAATTTGAGTTAATTAT TACAGTGTTTAAATAGTGGAAAAGTAGAACAAACTGAGTATGTCTGAAAGCTCCATTGGGAGGTATATCA ACATGTATTGAATATAGCCTTAACATGGCTTTATTAATGTTAAACAAAATTATTACAGATAACCATGTAC ATGTACATTTATAAATGTGTAGTCTATTTTACAGTAGTTAGAATTTCAATAAAAAAGTGGTGACACCTTT TTATGTAAAATAGCTTTGATTTTTTTTTCTTCATTTGTTCAGTTTGTAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds