Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030999669.1 PREDICTED: Strongylocentrotus purpuratus fibrillin-1 (LOC579490), transcript variant X1, mRNA GGGAACTATAATGGTAATGCTCTTTGAGTGTCTGGTTAGAAACGCGTCGCCTTTTCTGATTGTAATGTGG TTTCTACTCGACTATGATACCAGTCCGTTGACGCCATTGCTTGGTCACGTGATGGTCAAAGTGAGCCAAT CATGCCTCATGTTAAGGGCCACTTGGTGAACATCATGAGAGGAACGGATAACACATTCGAGATATTGGCC TAACGTATGTAAATCAACATGCTGCTCTGGCTGGCAACTAAATGCTTACACAGGAAGATGTACAATACCA ATATGTCAGCCACCATGTCAAAATGGAGGTCGATGTCTTCGGCCAGGCAGTTGCGTGTGCCCAACCGGCT ACGCGGGGACCTACTGCCAGTACCAGGCCTACGTTAGAACAGGTTCAGGTTCTGCAAGCTCCATCCATAC CAGTTCCTCGGGGTCCGTTAGACCTGGAACTGGTGGGTACAGTAGAATAACCTCCAGTACATCGACTAGA CCACTCACTGGAACCAGTACTGCCACCTTCAGTATCAGACCTGGGTCGTCCACAAGTTCAAGAACTTACA TTTCAAGGGTTAGGCCAGGAACCGCCACTACTGGATCCAGGACTTATGCTGTAACGTACACAACAGGGGG TCGAGGTAACGTAGTATCCACCAACGGTCAGCGCCCCTACCAATCAACGCACTTGTCTCCTTCATCGTCA TCGTCGGGATCATCGTCGCATTCGACGAGCGCTGTTGGTCTACCATCTTCCCAAACCCTAGCGCGTTTCA CCATGAGGGGTCCGTGTTTCCGACGAGTGAGCTCCTCTCATTGCATGGCCCCTCTCAGCGATATGACTAC CCTCCATGATGATTGCTGCTCTACTGTCGGACAGGGATGGGGTAATGGATGTTACGCATGCCCACAGGTG TTAGGGCAAGAACTACATTGTCCCAGCGGATTCAAGAAATCACCGGATACAGGAAATTGCATTGATGTGG ATGAATGCAATGCATTTGACAACATCTGTATGCACGGCTCATGTCTGAACTCACAAGGTAGCTACAGGTG TCGATGTGATCAGGGATACATGTCAGATACGTCTGGAACGCAGTGTGTAGTTTCAGTGAAGCAGATGTGT TACACCCGGGTGATCAATGGACAATGTTACGGAGGCGGTGGATCTCGGATGCCTACTACACAGATGCAGT GTTGCTGTAGCTTGGGATCTGCATGGGGTGCTGCCTGTGAACGATGTCCACAACAAGGCTCGGCTGAGTT CCGTGCCATGTGCCCACAAGGTACAGGGTACCATTATAAGCCCTCCAACGGATATAATCACGTCAGTGCT ATCGTCAGTTCCGGGAATCCTCGCCCCACGCAGAATGTGGACCCATGTGCCACAAACTCTCGGCTGTGCC TCAATGGTCAGTGCATTAATTCTGGGAACGGGGCGTACAGGTGTGAATGTAGCAGAGGGTTCCGTCTCAG CTCCAGAGGAAACCAGTGTATTGATGTGAATGAATGCAGCGAGTCCAGAGACATCTGCAATGGAGGACGA TGTCTGAACACCTATGGCAGCTTCCATTGTATCTGTTCTAGGGGGCTGGTCCTGAGAGGAGGAGTATGTG AAGACATTGATGAATGTACAGTCAGGAATGTGAATCCATGTGCAGAGTATGTATGTCAAAACACATTAGG GAGCTATCACTGCTTGAGAACTGAATGTACCAATGGTTACAGATATGATATAACACACCAAAGATGTGTT GATGTCAATGAATGTTCAGATGCTAACGTATGTGAGCATGGGCGTTGCATCAACATAGAAGGCTCTTACC GCTGCTTGTGCCCTCAGGGATTCACTTCCAATCCTACAGAAACAGACTGCATTGATGTTGATGAGTGTGG ACAGACCAGAGACACACCTTTGTGTGGTGAAGAGGCCATCTGTGTAAATGAAGTGGGTGTTTACAGGTGT GTTTGCACTGGGGATACTGTCTATGACAGTGAATCAAGAACCTGCCAGACCCCCGTAGAAGTACAGGGCG CACCAGAAATTGTTGAAGTGGATAGAAAGGATTGCTATGGCAGCATCAGTGATATGAACTTTTGTTCCAA TCTGCTTGGTTCTAATGTCACCCAACAAGAATGTTGCTGCACCGTTGGGGCTGGGTGGGGTGATGACTGT GACCTCATTGTCTGCCCCTCACAAGGCACACTTGCATACAATGAGACATGTCCAGTTGGGCAGGGTAAGC ATGTAATTACACTGAGGAGACCAGTAGAAACCGTCAACGTACCCACCACTTACCCTGAAGCTGCTGCACA TCCATCTGCAGGCCAAGAAGCTAGCATCTTAGGCATAAATGAATGTGAAATCTTCCCAGAGCTTTGTGGT CCTGCAGCTTGTGTGGATAAAGAAATCCTGTATGACTGTAATTGTCCTGAGGGATACAAGTTTGATGATG CAAGCAAGACTTGTATAGTTCATGACTCGTGCTTTGTGTACCAAGGAGTGTGTGGCAATGCATCTTGTGA AAACACAGAAAACAGCTACAACTGCAAGTGTCCTGGAAGTTATGAATTTGATGCAAGCCTAAGAAGATGC ATGTCGATAGACCATTGTGAATCACCGGGTATATGTGGAAACGGTACATGTACGAGCACAGAGAGAGGTC CAGTGTGTAGCTGTCCTGAAGGTCATCGCTTTGTTCCATCTCAAAGGTCATGTGAAGTCCAGGATTATTG TATTGTATACAATGGCGTCTGTGGGAATGGTACATGTGTGAACAGAGCTGATGGGTATGACTGTCGTTGC CCTGAAGGACAGCGCTTCAATGAAAGGAGCAGTGCTTGTGAAGTGACCAATTTCTGTGTAGTGCTAAGTG GTATCTGTGGCAATGGAACGTGCATCCCAACTGAAAATGGATACACCTGTAGATGCCCCAGTGGCTTCCA GTTCGACAGTGATGGTGGCTTTTGTAAAGACATTGACCTGTGTGTAGATCATTCTGCTCTATGTGGTAAT GGTACTTGCGTGGATCAGGGACAAAATTTCATCTGCATCTGTCCTGAAGGATTTCAATTCTCCAATACTA AAGTCTGCATTGATATCAATGAATGTTCTACACCTACATCTCATTCGTGTGGCTTAGAAGCATCATGTAT CAACACACATGGCAGTCATCACTGTGCTTGCCCAGGTGGCTTTGAGTTCAATCCAGCATCAAGGACATGT GATGATATCAACGAGTGTAGACTATTACCTGATTTATGTGGTAATGCAACCTGTACCAATACTGATGGTA GTTACCAATGCTCCTGTGCTTTTGGATTCATGTACAACCAAACACTCGGCATGTGCATAGATACCAATGA ATGTGCTGTATACAGAAGTATCTGCAGTAATGGTACCTGTATGAACACACAAGGTAGTTATAGATGTGTG TGTCCCAGAGGGTATGAGTACATCAGTGGAAATGGCAATGGATGTTTAGACATCAATGAATGTAGCTCTG TACCTGGGCTTTGCGGAGATGCGACCTGTTTGAACAGAGAAGGTAGCTTCTTGTGCGGATGTGACCCTGG TTACTACTTTGAAGAGCAAGATAGGATATGTGTTGATATCAATGAATGTTTCCTATCAGAAGAGATATGT GGTAATGGTCAATGTGAGAACAGTGTAGGGTCTTTCAGGTGTATATGTCCTGATGGAGCAAACTTTGATG AAGCCGGGAGACAGTGCACCGCATTAGAGAGTCACACCACATCTCGTGATCCTGAGGCCATAGAAGCAGA TAGATGCACATCTCTGTGTGGTAATGCTACATGTGCTACTGATGCTAGTGGTCTGGTCTGTACTTGTCAG CCAGGATACCAGTATGATACAGCCAGTAAATCATGTGTTGATCTTGATGAATGTGAAAGGAGCCCTGAGA TATGTGGGACTGCTACATGCCAGAATAGGATAGGTGGTTATACATGTATGTGTTCTGAGGGCTATGTCTA CAAGAGGAAGAAGAAGATATGTGGAGATTTGAATGAATGCAAGAAGTATCGTACGCTGTGTGCTAATGGT AGATGTGTGAACAAGAAAGGCACATTTGTATGCTTATGCTCTCCTGGTCAGCAGTTCAGCTATAATAGTC GCAGATGTGTGGCTGCAGCAAGTATGACTGTGTGCAATAGGAACCCAGGTATCTGTGGGAATGCAACGTG TTCATCTGAAGGACATAGTATTCGCTGTTTGTGCCCAGCAGGATACGACTATGACGTGACCATCAAAGCA TGCAACACAATCGGTGAGTGTGACCAGCCCAATAGATGTGGAGAAGGAGCTCTGTGTGAGGATACTGTGG CAGGCTATAGATGTGTGTGTACAGCCGGATATATTTATAACTACCAAGATGGTGGCTGTAGAGAGATTCC ACAGCCCCCTCCAGAGGCATCAGGTGGTGTGGGGTATAGACCAGCCGTCACCCAGACAACCCCTCCTAAG AGGGGTCTAAACGAGTGCAATTCTAGCCCCTGTATTAATGGGGTATGCATCGATAGACCTGATGGGTTTA TCTGCCAGTGTGTGGAAGGTTATCATCTCGTTGATTCAGTTACATGTGAAGATACAAATGAGTGTGAAAG TCCAGATGCTCAAGACATATGCATGTATGGAAATTGTGTGAATGAACCACCAGGATCTTTCACATGTGAA TGCACCGATGGATTGACTCTTGACAGTACAGGCCGTAGATGTATTGAACTAATTGGGCCTGTGTCAGGAG GAGGGATAGATGGGGGAATCCCCCCGGAAGAGCCATTAGGCCCATGTTGGGGACAATCAGATCCAAACCA AGACATCTGTAGTAATGTAGTTTCACAAGAGAGCACCTATCAGCAATGTTGCTGCAACACTGGCTTAAGC TGGGGCAAGGAGTGTTACTCATGTCCGCTTAGACATAGTGAGGAATACAGAATGCTGTGTGTAGCTCTTT CATTATTCAATAATCAAGATGGAATTATTAACCAACAAGCAGACCAACCAGTACCAGGCGTTCCTCGCTC ATAGTGCCTAGCCTTTGATCAAACCCATCAAATGATCTTCATCATTCAAAACCAGCGGACAAGTTTGCTG ATGTGCATCTCACTGCTGACAGTCACAAATGGATTGGTCTTAGAGGATTCCGGAATTCAAAGTCGAGATA ACCTGTTACACATTCAAATTTTAGCCAACATTACACTTCTTCTGTATTTATGAACTTTGCCTATTCTTGT GTCACAGCAGTTATGTGATGTCTCGCACTACATATGGGCTGTAAACACAAATCATTGTTGCTATAACTCA ACTTATTACAATTACACAGTGGCTTTTAATTGACACTATTTGTGAGCATGTACACTGCCTTTATTTCACC GTCCATCCTACCATAAGTGTGCAAAATCACTTGATGTTCTGCAGATATTAATATCACTTGCTAAAAAAAA AGTTTTTCACTGCTTCAAAAATGATTAAATGTGTGCCACAGCATTCTCTCCAGCACCATGTTGTGTGATC TTTGTCAGGTTCAGGTAACTGCTTTTCACCCATTTTCCTATTGAACTTGGGGGGGGGGGGGGTTCGTGTA TTAGTGTTCTTCAAGAGCATCTATAACGTCAGATGTTTTGGATGATAGGGTAGGGTGACCGTATGTACTT AATTAGTGTATTGTACAATGTAACTGATCTTTCATCTGTGTACTGTTGAAGGTGTGAATTGAATGGAACT GATGCAAGAACACTACTGATTGTGCTGTGTACTGAACTACATCAGTTTTAATTTATAGAGTAGAGGTAAA TTATAAACCCATGTTACATCATTTATCAACTATTTGGGAACCTGTTCTTACTAAACTTATGGTGTCTTGA TTTTTTAGAATAAAAGTTTTTTTTTCCCCTCTGAACTTTAAGTTTGTATTGTCATAAAAATGTTGATGTT GTCCAAGGCTTTCCTTGGTAATTTCATGATAAGAGTAAATTATGAAAAATGAAATCACCTCCATCTTTAA TTCAAGTACAATGTGAATGTTTTATGGTATGCATAAAGAGGATATGATCTAGTGACTGTGATTGGATATA GAACTGTGTATATATGAAGTTAAAATCTCAACCAATATTCTTCTTTATTCTTACCAAGTGGTTTCACAGT CCATTGTATTAGAGATTTAATACATGTTAAAACATGCCAATAAAATTAACAACTGTGAGTCTGGTTATCA TGGTACAAACAGAAATATGTAGATTTTTGGTTGTTGAATTCAACCATGTAATATTAATTTATAGGATGAG GAATTTTAGCATATTTATTTGTTCTTGTAAAATATTGTTAAATAGTCATTTAATGTCAAGTGTAATGTAT TTGTTATTTCTAAGAAATTGAATGTTATAATATTCTTTGTACATGATTCATTTTATTTTGTAACTACTAT CTATTTCATGTTATGTTGGTAGAGAATAATTGAAGAGGGATATATTTATTGCACCACATGAGACTAACAA AAATACTAGAAATGTTTAATAGCAGTGTGAAATTCCCCTCAACTACCCTTTTATCTTTATGAAAATTATA AATGAACTAGACCATTTAACACAAGCTGACAGATCTAGATATGAAGATTGCTCAAGTATATAATCTATTT TCAGAATCTCTGTAAATGTATTTCAAATCATATACTCTTATTATTCGAAAAATTTCTGTCAAATGTGCTT TAGATTTTTTAGCACCTCCTTTTTTTTTTTTTACTAAAGAGCTGGAAGTAATTTTGGTGTACAGTACAAC CTTGTATTTTATCCAAATGAGTATGTGATTTTAAATTATTTTTGACATGTTGTACAAAACATATTTTATA CCAATTCTTTTCCAATGCAAATGTTTTCCTTTTCATATTATTTAAGGAATTGTCCAGACAAAGTATAGTT TAAATAAAAAGGGAAATCTTTTAAAAACTGTTTAAGGATTGTAATTTAAATAGAATAACTAACAAATTGA ACTTTTAACTACTTTCTAGCACTGATCGAATCAAAGATTTTCTTTCAGACAGAAATAACAGATTAATCTT AAAGCGATATGAATAACAGGGCATGTATTGAAAGTAATAATATTAATTTTTATCTCCATGCTTTGGAACA TCCCTGTTTACAAGTCTGCTAAAGAAAAAACAAGCATCATTTAGAAGGTAATGTTTTACTTTCATTTAAT TTGAAATGAAAAATGTATTATTATCCTCAAAAGGTCCAAGTAATACACATGTCATCATGTAACCTCGTGT ACAGAGTGTCGGTAGCCTTCAAGATGTTGACCTTGTATTAGATAGATTAAAGCAAAGCCCATATTAACCT TCTTTGCAATCTAATGTATTCTTCTTGACCTGTATTTTTTGCTAAACCTATTTCTTTCTTGCCAAAGCAT TAAAAAGTTATGAAGTAGAGTCTTTGAATATTGTGAATACTCTGTAAATGTACTTGTTTTGTGAGGTATA AATAAATGGCTGTGCAAGAGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds