Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT109916.1 TSA: Strongylocentrotus purpuratus WHL22.224810.1 mRNA sequence CACAGTTCGGCCCAAAGGTTCGGCCACAACCCCAACCTAAACACGTTATACATCGTGGTTGCTACTCATA CGTTGCGTCCTTATCGGAAGCTAAGTAAGCCCTCTCGTACATGGTAATCCCTTGGTAGTCATAATCATTC ATTTTTGTACAGCGTATACGTACATGTGTGCAGTACTAGTGCTTGCATGCATCGTGTAGACCCTGTTTGT AGATTTTGAGAGCACGCGTGACCCGAATCCTACTGTAGCTTCCGACAGAAGACAATGGCACGAGGAAAAC GCGGAACAAGAGGCAGAGGTCGTGGGACTGGGAAAGCCAAAGAAGCTGCTGAGAATGAGATTGCCGAAGA AAACATGGCTGAAGCTGGCGATGGAGAACTCGATGAATTTGACGTCGAAGACAACGGTGAAGAAGACGGT GAAAAAACCGAAATGGACGACTCTGTAGCTGATGAAGAGCAAGGAGAAGTGGAAGCAGAAAATGGGGAAG CAGACAAAACTGAAGCGGACAGAACTGAAGCAGAGAAACCCATAGAAGATGTCCAGCAGTCGGAAGAAAC ACCAATGGAAACCCAGGAAACCACCAAGGATTCTGAAGAAGAGGAGAAGAAACCAGCAGAAAAGCCTGTT GAAGAAGAGAAAGAAGCCAGTACAGATAAAACAGAGGAGGCTGCTGAAGACACTGAAGAGAAGACACCTA CAAGCGAAGAACCGAAGAAGGAAGGAGGATCAAAAAGGAAGAGGAAGAAGGAGCGTACGAGGCCGTATGA GCTAGAGAAGTACTGGAAGGCAGTGAAGACAAACCCCGCAGACTTCACTGGCTGGACATACCTGCTGCAG TATGTGGAGCAAGAGGATCACATGCCATTCTACCGTGAAGCTTTTGATGCTTTCTTCAAGTGTTATCCAT ATTGTTACGGTTACTGGAAGAAATATGCAGACTCCGAGAGAAAGAAGGGTACCATCGAGAGATGCTGGGA GGTGTTTGAACGTGGGTTGAAGGGCATTCCTCTAAGCGCCGATCTCTGGCTGCATTACATCAGTGTGACG GGTCAACAAATTCCTCGGTCCGATGACACCAGAACAGAAAAGCTTAGGGCTCTGTATGAAAGGGCGCTTG ACGTTGCTGGAAAGGACTTCAGATCAGACAAACTGTGGGACCAGTACATTAACTTTGAGAAGAAAGAACA GAAAGATTGGAAGCGAGTCATGCAGCTGTACGATAGAATCCTCAAGATCCCTACCCAACTCTACAGACAC CATTTTGACAAACTGAAGGAGTTTGTCCAAGCCCATCTACCCAAGGAATACCTAGACTTTGATGAGTTCC TCAACTTCCGAGAACAGGTGGTAGCAGAGGCGGGTCCAGAGGAAGTGGATGATGATGCCATGATACCGGG TGAAGATGCCCCACCCGGAGAGGAAGCGCCCCCCGGTGAAGAAGCACCTCCCGGTGTTGGGCCACCATCC ACAAGGGTCATAGAGGGAGAGAACAAGCTTATCCAGGAGAAAGTGATAGAGTCTCGTCGAGTTGTTTTCA GGAAGACTGAACAAGAAGTCAGCAAGAGATGGGCCTATGAAGAAGCGATCCGTCGTCCCTACTTCCATGC CAAGCCACTAGAGAAAGGACAGCTGAAGACATGGAGGGAATACCTGGAGTTTGAGGAGACCACTGGTAGC CATGACAGGACTGTCCTGCTCTATGAAAGATGCCTGATTGCATGTGCACTCTACGAAGAGTTCTGGATCA AATATGCTCGATTTATGGAGAAGACGAGTCAGGAAGCAGCATCAGAAGTGTTCAAGAGAGCTTGTGGTAC CCATCTTCCTTCTAAACCAGCCATTAACATCCAGTGGGCAGCTTTTGAGGAGAGATATGGAAACATTGAG CGAGCCAGGGAGATCCTAGAGCAGCTCCAGGTCAAGCAGCAAGACTCTGTCATGATCCGTCTAGAACGTA TCAACTTTGAACGTAGAGCATGCAATCACGAGGAGGTCATCAGGCTCTATGAGGGGTGTATTGATGACGC TAAGACAGCCACAGGACAGTCTTTCTTTGCAGGAAAACTTGGAAGGTTTTATCAAAAGGTCCTTGGAGAT ACTGACAAAGCTATTGAGGTGCTGGAGAAGGTCTTGATTCAGAAACAGGTGAGTCCAGTGCTGAAGGAGC AGATCTATACCCTCATCATGGATGTGGAGTATCAGAGGTCGCCCCTCAACGAAGAGAAGATGACGGCACT CTTCGATACGGTCATCTCAAGCAATCTACCCCAAGACGTCAAGATTCAGTTTGCTCAGCGCAGGATCCAA TTTCTCCAGGACTTTGGTAGCAACCCTGCAGCAACCCATGATGCTGTAGATGAGCATCAGAAATTGGTCA AGAACATCTCTTCTAGCAAGAAACGCTCGGCCGATTCCAGTGGGGATGCCCCACCAACATCAAACACTGC TGCAAGCGACACCAAAGCACCAGAGAAGAAGAAAGCCAAGACAGTAGGAGGAGGAGCCAACAACCAGACT GATAAAAATTCCAGTGGTTCAGGGTATAACAACTATAACTACAATCAGCAGGCGACTGGGGCACAGGCGG CAGCAGCAGCAGCAGCAGCACCACCAGCACCAGCAGCTAACACAGGACTGAGTGGAGCTGACTACCCGCC AGTAAGCTGGGAAAGCTGGGGTGCATGGGGTGCTGCTCAGCAATGATCCACATCATCTGCCTGCCTGCCA TCATCCTGTAGAGCATTGGTCAAAGGCGTCTGATGGCACACACTCCCACCACTTCAATGAAAAGGACATC ATGTAAATCCAAATCGTTTGGGAAGGACTGCATTCATGAAAGATCATGGAAGATCAAAACTATTTTAATC AAGGTTAAAAGTGTTTTTGATTAGTTAATTGTCCTTGTTGTCACTGTTTTATAACCATTCATTGATGTAC TGCTGTAAAAAATTATTGTTGCCTGTTAACCACTTCAAATACATTTTTTGTCAGTCTTTACAATCTCTTT ATTACAGTTTTGACATCTAAACCAATTATGAGGTACTATTTGTATTTGTTCAATTTTAAATCAGTTACTA TATTTCCTAATCAGGTTTGAGTTGAATTAATCCTATGTATGTCAGGGGAAATTTAGAATTGATGCTGCAG GATTATCATTTGATTTGCATATTACCATTTATGGTTTGCCATGTCCATCTGGTGCATATGGAAGAAAGAC AACCTTCGAGATGGATCCCACATGTAGTACTGTTCAAACTTACCTGAGTCTCTGTTGGGCTTGGAGACTG GATAGCCAAATACATGTTTTGCAACAAAGAGCTGACGTGTGAAAAAAGGATGTGCTGATGTCAATTTTCA ACTAGAATTTTACAGCGGCAGTTATTCATAACTGAAGGAAATTCAAGGAATAATGTATTTCATTAATCCT TTCATTATCTAGCTGCTTTTGTTCTGTACATGAATCATTGCTTGACAATTAGAAAAGATATTGATTTGTG TAGTCAGTACTTACGTGTGACAATGAAACCTGTCTTATTATCTATGATGCTGAATTGTGAAGAAGAAACA AATTACATTCCTTTTTTTTTTTTTTTTTTTTGTTGTTAGAAAGATGTTGTTTTAAAGAGTTGGTATGTGT ATTCGGTATGCAGAATTCAAATTGGTAATCTTCTATTGTTTCTAAATCATGGTGTAAGGGTTGTTAGAAG TACCCTTTAAATGTAAGAAGGCATATTCGAGCTACATCAGCTCCTGCCATTTTGCCATACACTTTACAGT ACAAAATGGCCACTTTGCAGAATGTATTCTGATGATTGGTTTGACTTTGTATTCCACAATACACGGCCGA ATATATTGAGCAGCCCTCTGTCACGTGTAAATGCATTTTTTTCCTAAGCCATGTCCATTTTTCTTTTAAA ATGTTGGAAATGGTGTACATGGAATGGATTCTTCAAATACAGATTTTCCACCAAACATATTTTGAAGAAA TGTATTCATGTACATTTTCATATTTTAATGTTTTGTTGAAAATAAGTATGAAAGTGTGTATCTTGTCATT TTCATGACAATTCATTTTTACTCGCCTAGAAATGGATTTTAGTTACTAAGACATCTTGTAAATATTCTAG TCAATAAGTCAGATGTAAAGCATTTTTTGCATGTTCAGCTTCACAACATCTTGTTTTCTTGTGAGATTTC AAGTCATGGTAATTAGCACTGATTATGTTGTTGTTATTGGTTGCTCATTTTGTGATGAGGAAAATAAATT TTTGTAAAGAACCTCAATGAAATTCTCTCTTTTTATTTCATGCATTCTTGTAACAAAGTCCCATAAAACA AAAAATGCCATGGTCTAGTGTAAAGCATAGCACAATGTGCAAATATTGAAATGGTATTTTATTTGATAAA TCCAAGAATAATTTATTCATTTATCTCTAACCTCCCACTTCCAAACAATTAGAAAGCAAAGTATAATCGA GTTGATGTCTTGAAAGTGTTTTGATAACTGGAATGTCGTTGTATTGGACGTGAGGATGAGAGGAAATGTA TTCTGCTACATGTATGGATACTTTATATTCAATGTTTCATGTACTTTTAATTTTTTATAAGAAGCATACA TTTTTTGTCCGTCTTAACAATTGGATCAGCAATATTAAGGAATAGTAGTATTTCCTCGAATTTGAGTTAA ATTTTAAGATGCTCTCTGATATGAGAGAAATACTCGAGGCATCCAATCCAAAAGCTGTCTAGATTTATAT CGGGGACAACTACTCGCGACATTCCGGAGGATGAGGCAAGAGTCCAGAATTATTATCTTAGATTCGTCCA AATCACTATAACGGAGCCTACTCCAAGTAGAAGGATATAACTGTAAGGAGTAAGGTAAATTAATGGAGTA AGGTAAATTAATGGGGTAAAGTAAATAACAATTACATATCCTGGCGAAAATGGCAATTGTTATCGGGTTT CTAGAGATGTGCATCAAGCAGATATGATTATTTACGCCCGGGGACCGGCCTTTAACGTCACCATCCGAAA TGCATGACTCGGTTTCGAACCAGGGTCGCCTGAGCCAGTTTGTAGGTAGACACAGAGCTGACCACGGGAA CGTACCGCTAGAGCAACTCGCATCTCCTTGAGAAAAAATCCTAAGAAAACCTAATTGCAGCAGCATGTTG CTTATCATTTGTCGAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds