Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT110359.1 TSA: Strongylocentrotus purpuratus WHL22.340404.1 mRNA sequence CATGAATCGTTTCCAAGCAAACAAATTACCGTTTCATGATTAACCTCGGTCATGTCTGTTGGTATGTGTG ATGTCCTTGAATCTGTACCTCCTTCAGCTTCCATGTCTTGATAGTTCAATTAATAACAACGTTTCAATAT ATAGATTTCAAACAGTTTCAAGTGAGAGTTACCATTTGTTTACAGATCAGTCATCATCGGCCATTTCAAT CGAAATAGCTCTGTATATACTATCGTAGGTGGCGCTCCATATACCCATAATTTTTCCTTTTTTGTGCGAC ATCGTGGCTTACCTAAGCACCAAGATGCAATTGTTTGTCCGAGCTGACGAGACCCACACCCTTGAGGTGA CTGGTGAAGAATCTATTGCTGATCTGAAGGCTAAGATCCAGGAGCTGTCTGGCTTCTCTGCCTCTGAGCA GGTCCTGTCCTGCTGTGGCGCACCCCTGGATGAGGACATCACCCTCTCCCAGAATGGACTCGTTGACCTG ATGACCCTTGAGCTCTCCGGACGTCTGCTCGGAGGAAAAGTTCACGGCTCCCTCGCTCGTGCTGGTAAAG TGCGAGGTCAGACCCCCAAGGTTGACCCCCAGGAGAAGAAGAAGAAGAAGGTCGGACGTGCCAAGCGCCG CATGCAGTACAACCGCCGATTCGTCAACGTTGTTCAGACCTTCGGCAAGAGGCGTGGACCCAACTCCAAC TCCTAAGCTGTCATTCCCTGTCAGAGAATGTTGCATGAAACAAATTGTAAAATAGTCGATGTGTTGATCA GATAATAAAACCTAGTCTGCTCTTGTGCAACAGCAATTTACTCTTGTGTGTGAGTTTTTATTAGAGGTGT CATTGGTGTTTGTGAAAGTTTGAATTTGAATATTTTATGTGGAAATCATGTTATAAACAATGATGTATAC CATAGAATGTTTGAATTTGAATATTTTATGTGGAAATCATGTTATAAACAATGATGTATACCATAGAATG TTTACCGGTATATGGGAGATTTACTGTTGCATATTGTGTATATTCCATTATTTATGATATGTACATATGT GTGAGAAATGTTTTTCATATCGTCTCTTTGACTTGTGTTACCCTGAACTACTTGAAAATCAGTATTAAAT GTCACCTAGTGCTCATAGTTTTAAGCATGTACTGTGAATGATAATAATGTGATAGTATTTTTGGCTTGGT ATCAGTTCATGGATGTAGGATTGTAGGTGGTATGATTGGTTGATTTGACAAAAAAGGAAAGCGTGATTAG TGAACGAATGTGTGTTATGACTGAATGGATACATGTTGAGAGAAAGCAAGATTTGCATTAAATGTTTACA TCAGGAAAACTTGTAGATTTTGGTACAGGTGATCTAGAAGAAGACTAGATATTTAAACTTCTTTCAATGT TAATCTGAGCGTAAATAATAATATTGCAAAGAATAATGAAGGGTCGAGTATTGGGTAGTTGATATTGGCA GACAAATGGGAATTGAAATTCAGTTTAGCAACATGTTTGAGTTGAGTCGGACTTCTCTCCCTTATGGTCC TGCAAATAAAATACCTGAAATAACATGTATATTTCTACTTCATTTCTGATTAAAAACCGTGAAAACAATT TTGATATCTGTTGTACTCTACCACTGACTCGAGGCCCTTGTTAAAAACATGAAATGAACACTAGTATACT AGTTGGGGCTGCACCCCCTCCCCAAGGAAATGTTAACTGACAATACACCAGAGATGAACATATTTCTTGA TCTCAACTCCTAGATATTCATCACTGTTTTATCACTCCAGTTTCTTTCAAGCTTTCACTCGACTGCTCTT GCTCTTGCACACTCCAACGTGTTTCAAAAGTGGAGCATTCTTTAAGTAAATTGAAATTAAATATGAAATA AATATTATAGAATAATATACCCAGTTAATTTTGAAAAATTAAAAGCACAAAATGAAATGCAAGACACAAA TATTTAAAGTGTTTTTAAATATATCTTTAATATACCATTCATTTCTGATAGGAAGACAATTTATTTGGCA TTTTTGGAAAAATCACTTTCCATATTGATTTGGTACTTTACAACTCACAAATAGAGATTAAATTCTTATT ACTAAATTTTTACTTCATTAGATCATTTGTGTATTCAATCAAATTATTCACACAACTTCCCTCACAGACA ATATGATATGTGTTTAATGATGATGCAAAATGTCTAACCACAACATCAATGTTTATACACAATGGAGAAA AAAATGCTAATAATGAGTCACAAGTGCAAATAAGATTTTATATATTAGTTAAAAGTTGTGCAAATTTAAG TACCGGTACTGAGCACACAGGATTTTGTGCTACATTCAAAAGTATTTAAGAGTAATACCCACCCCCTCCC CAAAAAAAAAAATGATCACATATTATTTGATTGTCTTGTTCTGTATATTTTTGTATAAGATTGTTGTATG ATCTCCCATTGTATAAATGATGTTCTTCAATGTTGGCCTGTGACAGATCACCTAGAGCCCTAGAGGTATT TTTGCATGCCAAAAATAGATGATTATGGAAACATATTCTTCCTTTTTTCTTTCAATATACAAATATATTC ATTGTAAAAATTCCTTTAACATCATTGCACAATACCCAGCATCTAAATGTGTGATGCACAATTCATGAAC AAACCAAACTCTGGTACTCTGGTAGATAATAAATTTGTCAGATTTGCTCAATATGCAGAACTGACAATAA GCTGTACGGTGTCCCCAATTTTACACAAATAATCTCTACATTACAAATTTATCTAAACCAAAGTTCAGAT GGATGCTACAATCTATGAAGCACTTGCCAAACACTGCAAGATACATATAAGTTTTAAAGTGCTCCTTCTC TCCAACAAATCTATCTTGATTTGAAGTTAAATTTCCTTTCCTGTTCACAGAGTTAATACTCTTTTGTTGG TAGATCACACACAAACCTGCCATTTAGAACTGAATAATCCCTTTAAATATGGATATATTTCTATTTCTCA AACTACATATGCAGTTAACTAATATGACTAGAAATAAAATGGCAATTTTAACAAATAAAATCTTTAGAAA TGATAGGACAAAGTTAAATATATTTCTCGTCCTTGTCAAAGAAGACACCTACCCATATCCTAACATTTTG TTATTCAAGGTGAAAGACAGCAGCATAATTATATCTAAAATACAGACCCTTGCGGGAAAAAGATGGAAAA GCCATAAATGGAATGACAAAGGGGGAATACAAAAAGTATTAGTAATTATTTTCACTAAAGCTAATATTTT AAGTTTTAAATACATTACAAGTAACCAGATTGACTAACAGAACAGAATATTATATCTACATTTTTTGGTT AAAGTAGATATTTCTGCCAAATTGTAAAAATACACTTCGTCGATATTACATTGATATAGACATAATAGTG CTGCTATTCATTCTATTGTATTAAATGTCATTGTTACACATAAACATACCCACTGGTGTTGGAATGCATA TGAATTTCAAATGAAAAGGCAAATATAATTAATCTTACAATATAAATGTTAATGTCATAAAATAACCCCC AAAATGGTAAATTTAGGAAAATTAGAGAAAGGAATGAATTACTATTCTACTGGTAAATAACACTGGGGTC CACTCGCCCTTCATAGGGACCCGCTATTCATAATTTGAGAAAAGGTCATTATTCATAAGCTGTCCTTATG ACTAGCGAGGTCAACCGAAAAAACTTTCCAACTGGTTATAAAGTCATACTTTTACATACAGATAGTATTT AGTTTTACAGGATTCATAGAGGTGCAAAATTGCCAAAAGAACATACTGGAAAACGTGTTTTATTATGACG ACTGATATTAAAACCTATTCCTCTTTTTTTAATTTTTATGAAAAATGCAGGAATGGAATCGAGTCCTACC TTCTTAATTGTATTAACATTTCTTTTTTACAGCTGGCACTGAAAAAAAATTAATTGCTCATGAAAAAATA GAGGTTTGGGTCAAAATAGTGCAAATAGTGTCAGATTGTTGTATTCTTTTTGTGACTATGTGCTAACCGT GCACAGAGTGTTCAATACCAAAGTGTGAAACATAATTAAAAAGGTGAATGTGCAATTGTACATTTTTTAA AAGGCACATCATTTTTAGCAATGTGTAATTTATGTAAACCTAACAGCATATCCTATATCCTTCACCTCAG CCTCCATTTAAGGAAAAAACATACACTTATGTCCAAAGAATAAATCTATCCTGGCAAAACGTGAAGATAA AAATACTTTACAATAGTATGATATGTAACTCGTATATAGTGAGGTAATGTCAAGGCTCCTATAGTTCTGA TCAATTACCATACTCTTTTGTGTTATGTACAGTATCCATGGATATCAAATTCTTGCCATTATCAAAATTA TTATTATCATTTTTTTTAACACCGGTAGGCTTTTTTAAGGCCATTCAAAACGACTAGTTTTAAGCATACA GTTGAAAATTAAACTGGAAAGAAAGCATCTAAAAAAAAAAAGAGGCTAATTTGGTGCATTTCTTATTCAC AGTATCACCTGCACATTATTATGTAGGGCCGTCTGATACCTAATACAAAAATGAAAGAAGATATAGTGTT GTAACATATAAGAATGTCATTAAATTTACATTGATTTCTCAAATACCACACAACCCAAAAATGATCTTTG GAATCTTTCATGTACAGACAATAAAAGCTGCTGAATAAAATTTCACTTAAAATTATGGTTCTCTTGAACT TTATATCCATAACACAGTGGAACATGACAAAAGAAATACAAAGGAATTAACTTCTAATAAGATGAAACAA TACTCTTATTCACTATCATACATGTATCTCTTTCATAAGTTCAAAATTACACAATACAGCCTCGTTCAGG CAAAACATGTTAAACAGCCTTTTAGAAAAAAGCGCTAGCGCAAAATAAGTCTTTTCCCATGTATCAGTAA AATGGTATCGTAAATGAATACCGGTAGCAAATGGTGTTGAAAATGGTAGAGCATAAGGCACCACAAGGCC TCTTTCCGCATCTGTGTGTTGTAAGAAACAGAAATCCGGAGCACACTTGCTTATGTTATTTTATTTTGCT ACAGCATTTTATTTTCTTTAAGACGTTTTATTTTATTTACAGGCCCATTAAGATTGTCTTAGATCCTTTA AAAAAAATCCTTGATTTAGCCATGCTGCAATGATAATTATAAACCTTTAGGTCAGTCAGGAACCCCATGG CTTAACGCAAATTACAAGCCGATCGCCTGTCTGATTATCAAGATATTTATGATTGAAAATCGAAATCAAA TTTTGCGTTTGCAAAACGGTTTTCATGACACTACAGTCTAAAAACCGGTCACTCAAAGGTTTTTACTTTT TTGAGGCTCTTCTTGATCATTTTGAAGTGCATTTTTTTGTAGGGCTTCAATATAACACCATATCACAGAC ACTGATAACACGTAGGGCCGTGCATATCTCAGATTTAACATTGTTAAACGATCCCTTTAAAGATACTATG TCCCTTTTGCAGCCAACATCAAATTCTGTAGAACTTTGCAGGAATTATGAATATGTCATAATGTCTGTGA AATTTAAACGTTAGCAGTGTTCTAATATTCAAATTATGCAAGGAAACCTGTTTACTTTCTAGACTTCACT GTCAGACACTATTGAGTGACTGACTGGCTTTTTATCATCTTTAGTAATAACATGCATAAAATGAGCTGTA AAGGGTACATGAGCATTTGTCTACATCAATAACCCACTTCTTGTAATGGCCAAAATTAAACTGATTGAAT CTTTGCGCAGCATAAAACGTATGACCATTCGGTACAATGGTCTGAAAAATCAGACTATTACTTACTAGCT CTATAGCTCCTAAGTCGATTCGACAACTAATAGTCATTATTTTCCCACTTAAAGACATTTTCAAGCCCCT CTTTTTTTAGGGAAGTTCTAATTTAGTATTGTCTTTCAAATGCCGTTGGAATTTAACCTTTTCATTTTTT TGGCCTGCAAATGGGACATAGTACCTTTAAGGCAGTTTACGACGTTGTGAGTGAACGAGGCGTGGATAGA CACTATACAGACATCAACTGCAGCAGCCACCTGGTTTGACCTCAGCATCTATAGTACTGTTCTCTCTGGA ACCATATAGCTTGATGCTCTGTAGTTGCTCATCTATGTCCTTCTTGTTCCTGTCCATGACAATCTTGACG AGACCTTCAAATGCCTGGAAGATACAAAAAATAATAATAATACGTACATACATTTATTCACTTTTTTTAT TCACTATAAAGAAGGGGTTATTTCACCAATAAAAGTATTCTTCAGTGAGGTCCTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds