Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT094763.1 TSA: Strongylocentrotus purpuratus WHL22.436334.0 mRNA sequence CTGGAAGCTGTTATTCGATCAAACATTGCATTCACCATGGATGAGCAAGACGGGAAAGATCCCCGCTACC AAAAAGAATTGATTTACAACAAATTGCTACCGTACTCCTCAGAATTTGAGGAGGAATCGGAGAGACATCT GACTGAAATCAAAACCAATTTATCGCTTGCTGTGCAGCTTCGTGAACTTCGCCCTGGTGTGCTGTTTTGG ACCGGGAAGTTTTCGGCGTATATACGTTATTATGGCCGAAAGTTCAGCAAGGAAGAGCATGTTGCCTTCA TCAAGCTCTATCTGGAACTTATCAACATTCCAGATTTGGAATTCAAGATCATGTCAGAGTTTGCCAGAAT TCTGAACATACTTCTCAAGAAGCGAAGTTTGCTGTCACGAGACGACCTGCTTATACCCTGGCGACCCCTC TACAAGATTGTTGAAAGGATCATGTACTCACCATATGAACCATTGGGCTTAGAATGGTATCCACACACCC TGGAAAATCGTCTAAAGTCCCTCATGCGGATGTCCAGACCATATTTCTCAGTTGACAGTACTAGAGAAAT GCTAGAGGAATGGCGCCCTCTCTTGTGTCCGTTTGATGAGACCATGGCCAAGGGTATCCATTACATGGAG TGCTTTCTCCCAACCCTGCTTCCACCAGAACATCACCAACATGGCTTCAAGTTATGGCTGGATGAAATGA TCAGTATATGGAACAATTCGCAGAACTCTCCGCACATAGAATCAGCACTAGTAGACCTATTTTCTAGATT AGCTACAGAGAATATAGGATACATCGACTGGAATCCACATATACCAAAGATATTCACATGTTTCTTGAGA GGCCTTAGTCTACCTGTTGGTTCCAAGAAGCTTCAGGTAGCTCGGAATGGGAAGGGTTTTGATGTTGGTC CTCTTGCAACCTGGATTGTTTCAATGCTGGGTCACACAACAACTTGTCAGGACCACTTACATAAGTTCTT TGTAGCAACAGATTCATACTTCCATCCATCCAATACTGGAAAATACTCTTTCAGCCTTCAAAGGATGCTT GGTCAGCTATCCAGTGAATTTGTCAAGAGATTACACAGAGAGAGGTATAAGAAGCCCTCGTGGCAGCACC AGATCCCTGATGATTACAAGCTGAAAGAGGATGACATCACAGCGTTTGTTGAGAGCATCAAGGCTCCGGT GTTCCTAGCCATGTACAGTAAGATGGGTCACAGGGATGCTGCCTCGACCCTGCATAACCTGGCCTTGCTG AGACCTGAGCTGGTCATACCAACACTGCTGGAAAAGACCTACAAGGCTTTAGATACCCTGACAGAGCCCC ACCAGCTGATAGCCACAGTGAGCTGCGTGGTGTCGGTCTCCTGCACCATGCTCAAGGGGGGCAAGTGGCT CCCCGATGGCCCCACTCACCTACTACCTCTCCTCCATGCGATGCTACCTGGTATCGATCCCAACGACTTT GCCAAATGCATGGTCACACTGCAAGCCATCTCTACCTTCACCGTCATGGTACCCATAGTAGACTGCTCTG AGGCTTCCCTGGTTAGAGACGACATCACGGAACAGGAGAGGGAGCTCTGTTCAGCAACAGCCACCTTTGA AGATTTTGTGCTTCTCTTCATGGACAGATGTTTCAATCTGATTGAGGCATGTTCCATCGAGCATATACGA AGCCAGGACAACGATCAAGAAAAGGTGAACCACCAAGAAGCCATGGTGGACGTAGGATTGTCTTCAACAT TCAGTACCATCTGCTCCCAGAGCTCACCTCAGATATACAAGGCAGCAGTCAATCGTTTGTTCCGCTATGT TTCGTCGTCTATCCTTGAGACTAAGGTGTCTGGTAAAACCATTGCCAACATGTGCAGGGCAGCCGCTAAG GTGGATCCCAAGTACACTCTGTCCAAGTTTGTGCCTCACTGTAGCAAGAAGATCCTTGATGCCTTCACAT CAGAAGAGGTCCAGTTGGAAGAAGAGTTGGACAAGGAGATTCTCTTCAACCTCCAAGTTCTCTCAGAGGT TATACGAGTTCCTAGCGAGGTTGTCCTCACCTATAAGGACACCCTGAAAAAGGTCCTGAAGGCTACCCTT CATCTGACCTCTAAGAAAGGTTACGAGCTGTCCTGCCAGCTACTCAAGCACTGGCTACGAGCTATGTGCC TCATGTATCCTAGGGAGTACTGCAGTATAGCAGAGGGCTTTGACAGGCCACTCACAGAGTACTTGCCTAT CAGGGACTGGGCAACGTGTGGTGACATTCACAACCTGGGTGTGAAGTGGCATATACCCTCTGATGACGGA GTAGCATGTGTGAAGGAGCTCTTAGATATCTATTACAAGCCAGAGATAGAGAAACTACAGAACTACATCA AGGGGGAGTCTATAAGCAGAGAGAAGCTACTACAGAGCCTGACCATCTTGTTCAATGTACTGACAGGGGC AGGGGTTCTTATGCCTAAATGGAAGAGGCCCTCGATACCAGAGCTGAGTGAGAGTCAGGTTCACATGCAC ACTCTAGATAGGACACTAGGATCAACGGACAAACAGAAGAGGTTTGAAGGCATCAGAGAAGAACTAGCTC AGGTGATGCATGATCTCCTTAATCATCTACTAGCAACAGGGGAGGATGACACCAAGTCTATTATACTCAT CATCAATATCAACAATGCGCTGATGTGGTACATGGGAGCAGAGAAGAAGGACTTTGACAGTCGATGGAAA GGATTCCTCATCATCAAGAAAGCCATGGAAGACAGGTTACATGGTAAGAAGAGGCACCTACGAGCCCTGT TGATAGATCGGGTGTACCTCCAGCATGAGATGAGGATGCTGGTCCAGGCCAAGCATGTTTACACTGATCT TGATAAACAGATCCACAGTGATCTGTTCACACTCTCAACAAGCAGGTACAGTGAGGTGCGTAAGAAGGCC CAGATCATGCTGTTCAAGATGATGGATCACTTTGTATCATCAGTGAGGCTAATCATTCCTAAGGTCTTGG TCAACCTCAAGCCAGATACAGACATCCCACATCACCAGTTCAAGGGAGCCCTCTATGTACTAAGTGGGTA CAGCATGAACAGCACATGGGCATGCCTGCCTTACTGGTCAATCCTGAAAGACGTATGGTTAGGACTGGTC AATGCCGGCCACTCTGAGAAGCTGTCCATCATGAAGGTCTTAGCTCAGGTCATGATGAAGGTCAACAAGG TCTTTGACACGTCGGCCATCACGGTCAAGGTTTCAGATGGCGCCAGGAGCAAGGCCAATGATTTGGTACA GGGTTTGAACGTCAGCATAACGCCTGAGCAAGAATCAGCATCAGTACAGAGGTTACAGGAACACAATCAA AGCAACATGAGAGTGTATAATGAGCTGGTAGCAGAGCTGGTGGATGTAATAGAGCAAGGTAAACTGCGAT GGAAGTTTTCTCAAATGGCGGCAAGCCTCCTCCGTCTTCAGCTGAGGGTAGACACCCCTCCACCAATCCC TGTCGTACGGCTCTTCACATCCCTCCTTGTACATGACACTCTTAACCTAAGAAAGCTTGCCATTTCAGCC ATGGGTGCAATAATGAAGCAACTGAAGCATCCCCACAAGAAGGTGCCCCTGGACCCCTACGCCACAGCTG GGTGCCCCGCCCCTCCTGACGACGCCCTACCCAACCCCGGGGAGCGGCCGGACAACAAGTGGACCCAGTA CCAGTGTGACAGGTTGCCCACCACCCAGGAGAAATGGGACCAGTGTGTCTTTGTGGACAAGACTCACTGG GGGTACTATAAATGGCCCAAGAACATGCAGATCTACGCCCCATTCAATGAACAGCCCAAGCTAGACCGTA GCAGAGAGGAGCTGTCAGAGACGGAACAGATCATCTATGATCACTTCAGCAATGCAGAGTTTGTAGAGAA ACTAGTAGGCTACCTGTCCTTAGAAGATAAGAAAGGAAGAGACAAGTTTGACAACAAGAAATACACAGTC TTCAAGGGACTGTTCCGTAACTTTGGGGACACTTTCCTGCCAGTCTTCCAGCCCCACATAGAGAGGTTGT CCAAGGAGGCACTGGAGAGTAGCCAGCGGAGTATGATGGAGATGATGGCTGGTGTTATACGAGGCAGCAA GCACTGGGGCTTTCAAAAGACCAAGAATCTGTGGGAGACTGTGCTGCTACCTTCTATGAAGACATCATTG TCCTTGGTAACAGCAGAGACCATCATAGATTGGGGGATGTGCATGGCTACGTCATGTGAGAGTAGAGACC CTCGAAAGCTTCATTGGCTGTTTGAATGGCTCACCCAACAACCAATCAGTGAAGATGAGGAGAGGGGGTC TTTCCTGGATTCAAGTCGTCTGTTCATCCTACAAGGTGGATTGTTTCAGCAGGAGTGGAGAGTACCAGGT CTTCATCACAGACTGTTAGGCTACATACGACAGCATCTTACCCACAGCTACAAGAATGTCAGGGACAAGA TCGGCAGCTTCCTGGTCATGATCTTCATGTACGACAATGCCTGGTCCCGGGAGAACCAGACATCCTCCCC TCACCGCCAAGAGTTCTTAGAATCCATCCTACCCCAGATGGCCCCCCTGGCTAACATAGACGTCTGGGGA GCTATCCAGGTCTCTGATGAAGAGAAGGCAGAGGATGATGAGAGGAAGAAGGTCATTAGGTTATGTAAAA CAGTCATGAAGTGGATTGTAGGTAGCCTAGGGAACCTTGTATCTCCTGCACCTCAAGAATACTTCCAGTA CCTTCCTCTGTTTGCACCTCTTGAGAGCTGTGAGTCTGATGAAGAGCTACGGTATGAAGCAGAGATGACC CTAGCCTGTCTAGCCCAGACTTTACTTCAACCAGGGATGATACCCCTTGTACTCTCCTCTCTACAGCAGA TTGGTCAGGGCCAATCCTGGAGAGCCAAGTGTAGTATGTTAGAGTACCTTCAGGTGATGGTGTTCTACAA CCTCTTCACCATCAACAGTCTACCCAAGCATATAGAAACCATTGGTCAACTCGTACTGGACAGGCTCAAG GACGATCGCCTTGAGGTGAGAGAGGTAGCAGGTGCAACACTGAGCGGTCTGATTCACTGTGGCTTCTTAC CAATGGAGAATGGGATGCAGAGCCACTTTGAGAACCTGTGTAAGACAAGACTATCGACCAAGAAAGTAGT CAGTATGGCTGCACCCGTTGAAGCCATAGTCCAGAGGCATGCTGGTATCCTGGGTCTGAGTGCATGTGTC CAAGCCTACCCCTATGATGTCCCTGAATGGATGCCAAGGATACTGATGGACCTCACAGATCATCTACACG ATCCTCAACCTATCGAGAAAACAGTGCGAAAAACCCTGTCTGACTTCCGCAGAACGCATCACGACAACTG GCACGAGCACAAGCAGAGCTTCACAGACGACCAGCTTGTAGTACTTACTGACCTTCTAGTCTCGCCCAAC TACTACGCATGATGCAGCCTTTGTCTCGTTTGAAGTTGTCTTCTCAGCTGGTCAAAATTCTTCAGAATGT GAAACACCAGAGCAACAAGTTTGGTGAAGTCGGCGCATCTCTCGGTGCTAACCTGCTGTAAGATTTGTTA TGCCCAGTAGGCCAGTATGGATAGTTTTTAAGTATTTGCTATTATGGGATATCTATGCTACATTATGATG TGGTCTATAATATTGAACAGTTCACATCACAGCCATGTATTGTCAGTCGTAACTATCCCCTTCTTACACT GATAGTGTATGACTCAGAGACTGGAATTCCTTAAGAATTAACATATTATAAAGTCATACATAGCTATTGG CCAGTAATAAGAAAAAGACTGAATTTGTAGACAATGCAACCTTATCCATGACAACATGAACTCTATGACT GTATGTGTGTCTTCAGATATCTAGTTACCATAGATACACTCACAATATTTTATACTATTTTATTTGAGGG TTAAAGGAAAGGTATACAATTATTTCATTATTTTTAGTGAAATTATTAATTGTAGTGATCTCAATAATTT GTTACTATGGCAGATGAGGCATTTTAAAAGATATGAAACTGTTGCCAATTTAAAGAGAAAAAGTTGTTCA TTTATACCTCAGAAATCTCTGAACTGCTTTGGGTTAATGGATTTGTTTGGATTTAGATCCTGAAAGCATT ATTTGCAAAGATCATACACTTTCACAAAATGTGTATTCAATGTTTTTTAAATATGATCATGAAACAGGGG TGCACCAATGAACAAAAATAGTACATTTCTGTCAAAGAAAGTGCAATCTATGTTTTAGTTTATATTTTCT TTTTATTACAGTTAGTCACTATGTATATTACTTTTATTATTTTCATGTTAGAACTTTGCAGAATTTCATT TTCTTTTGAATTGTTTTAAATTGATGTGAAAGAATTGGTTTCTCTAGCATGAAGTTATTTTAGTTGACAT ACTGAATCTTTTCAAATATGTCATTTTATTCATTACAATTCAATGTGAAGAAGAGTGACTACTAGTACCC ATACCCATGTAATCACATTTTTAGGATGTTTATGCAGGGCCTTCTGTTTATATATTTACAATGGGTAATT TTTCTGGAGTTCCTTTCTTTTTGCATAAATTAATTACATGATTGGCTGGCCCTGTGCAGCTAAGTTGCAT AGGAAGTTAGGAACATTGCATAATTCGTTCATTCACCTGTTACAATTGAATTTTAGTTGTTGCTAGGTCA AACATTGTGATTTGCCAGACCTAACAACATGCAACTTCCATTTAAAGACGTAAGCACTTAATTTGATTAT ATTACAAAAAGAGCCTTTAATGAGAAAACTTCATGAGTTTTGCTGACTTTGTCATATTGGATTTGGACTT TTAATTCACACTTCAGATGAGTACCAGCCCCATGTTCACTAAGGCTTTGTATTCAATATTTTAAAACTGT TATGATGATGGAAATACCTCTTTACCTATGGACAAAAAAAGATGTGTTGGGCTGTATGATCTAAATTTAT ACCGGTGTTTGGGTATTAACTCTGTCCATTGATTATTGAAAATTCATGTATGTGTTTATGATGTACAGTT GTTGTTTTTAGGATTTTGCTAAATTTGGAGTCATGCATGTTTATGAATAACAGTTATTATTTGGTTTGAG ATCTCACTAATTCCTGGTCTTAATCTAGTATATGGTTAATAGTGGAATTGTCCATACAATAATCTGTGTT TTTTTAATCAACCAATATCTGATTCCTGGGTTGTGCTCATCCAGTTCCAAGAATTATGAAAAGGTAAATT ATGTTATATATTTTTGTTTAGATTAAGCAGACATAAGCTCTCTTATATATTACATTTTTATTTCTTATAT GTTTGAATTAGGGGCAACACTTCCATTTAATTTGAAGTTCATCTATAGAATTGCAATATTTTAATGGATT AGGTACATGACTGTTTTTAATGTCAATTGGTAGTAAAGTTAATGACTCATTTTTTACGTTCTCGAAAGGT GGAAAACTTAGGTGCTAAAATAGATGTAGAACTTTGAAATACTGATTGATGCAGGGATAAGTATTCAGGA ATTTGGTTCATTCAATATTTATCAGCTTTTGTTTATCCACTGTGATCTGTAATAGATGGACTTTATTTTG AATATATACATATATAAAAAACAGCTAGTTACCCTGTAGTTAAACAATGCTCATGTGAGATCCCCTAGGC TTTACACGTTTCACAATCTAAAAATAGAAAAAAGGCCTATATTGAGATTCTAGTTTCGTGCAGCACATTG CCAGGAAACTCTGTTGTGGTATCCAGGTCAATATTTTGTGTTGTTTTCTCAAGCATTGTACAGGACAATT AAGATATGCTGTACCGTATCTGGACACATCCACCCCCGGATAGTTGTCAGGGGTGGTTGTCCAGGGGGTA GGTGTCCTCACTATGAACATGACGGACAAAGAAAGCGGACAAAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds